• 제목/요약/키워드: High-throughput optimization

검색결과 59건 처리시간 0.028초

CDMA2000 1xEV-DO 이동통신 망에서 일대일 주문형 비디오 서비스를 위한 비디오 트레이스 기반 무선 MAC 스케줄러 (A Wireless MAC Scheduler based on Video Traces for One-to-one Video-on-demand Services in CDMA2000 1xEV-DO)

  • 편기현
    • 한국정보과학회논문지:정보통신
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    • 제36권4호
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    • pp.351-359
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    • 2009
  • CDMA2000 1xEV-DO 이동통신 시스템에서 주문형 비디오 서비스를 고품질로 제공하면서도 합리적 수준의 시스템 성능을 제공하는 무선 MAC 스케줄러를 재안한다. 제안하는 스케줄러는 응용 계층에 존재하는 비디오 데이터 정보를 MAC 계층에 존재하는 스케줄러가 활용하여 주문형 비디오 서비스의 품질이 개선되도록 한다. 우리는 시뮬레이션 실험을 통해서 제안하는 방식이 이전에 제안된 비디오 트레이스 방식과 비교 했을 때 VBR(Variable-Bit-Rate) 비디오의 비디오 프레임 변화가 클수록 더 뛰어난 품질과 성능을 제공함을 보인다.

대량 발굴 프로테옴 분석을 위한 어쿠스틱 기술 기반 고속 단백질 절편화 (Acoustic technology-assisted rapid proteolysis for high-throughput proteome analysis)

  • 김보라;천후엔창;한나영;박종문;유웅식;이후근
    • 분석과학
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    • 제24권6호
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    • pp.510-518
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    • 2011
  • 최근 질량분석기와 다차원 크로마토그래피 분석법과 대용량 데이터를 처리하는 생물정보학 프로그램 등과 같은 복합적인 기술요소들의 발전은 대량 프로테옴을 분석하는 것을 가능하게 했다. 하지만, 이런 대량의 프로테옴을 분석하는 것은 단백질 절편화 과정의 긴 소요 시간과 낮은 재현성으로 인하여 한계를 가진다. 이 연구에서는 어쿠스틱 기술을 이용해 빠르게 단백질을 분해하는 새로운 방법을 제시했다. 이 어쿠스틱 기술의 시간과 강도를 최적화하기 위해서 여러 가지 조건에서 BSA 단백질을 트립신으로 절편화한 후 액체 크로마토그래피와 질량분석기로 분석하였다. 16시간동안 인큐베이션하는 기존의 방법과 슈퍼 어쿠스틱 기술을 사용한 방법을 비교하였을 때 슈퍼 어쿠스틱 기술이 기존의 방법보다 더 높은 아미노산 동정율을 보였으며, 유방암 세포와 같은 단백질 복합체에 적용하였을 때 30분의 절편화 시간에서도 효율적인 결과를 확인할 수 있었다. 이 새로운 방법은 샘플 전처리 과정에서 많은 양의 단백질일지라도 더 좋은 효율성을 가지게 되고 또한, 소비되는 시간도 줄여주며 일정 시간내의 샘플 처리량도 증가하게 된다.

초고속 관측 데이터 수신 및 저장을 위한 기록 시스템 설계 및 성능 최적화 연구 (The Study on the Design and Optimization of Storage for the Recording of High Speed Astronomical Data)

  • 송민규;강용우;김효령
    • 한국전자통신학회논문지
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    • 제12권1호
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    • pp.75-84
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    • 2017
  • 초고속 환경에서 대용량 데이터에 대한 안정적 기록 및 효율적인 데이터 접근의 필요성은 갈수록 높아지고 있다. 이와 관련된 기초과학의 한 분야로 방대한 천체 관측 데이터를 생산하는 VLBI(: Very Long Baseline Interferometer)가 있는데 고분해능, 고감도 관측 연구를 수행하기 위해서는 고성능의 데이터 저장 시스템이 요구된다. 하지만 시장에 출시된 대다수 클라우드 기반 스토리지는 일반 IT, 금융, 행정 서비스 지원을 위한 저용량, 복수 스트림의 비정형 데이터에 최적화되어 있기 때문에 빅 스트림 데이터 기록을 위한 최적의 대안이 될 수 없다. 본 논문에서는 이를 극복하기 위한 방안으로 데이터 입출력 처리에 있어 고성능, 동시성에 최적화된 데이터 저장 시스템을 설계하고자 한다. 이를 위해 멀티 코어 CPU 환경에서 libpcap, pf_ring 등의 API 호출을 통해 패킷 입출력 모듈을 구현하였고 외부로부터 유입되는 데이터를 효율적으로 처리할 수 있도록 소프트웨어 RAID(: Redundant Array of Inexpensive Disks) 기반의 확장성 있는 스토리지를 구축하였다.

Identifying Responsive Functional Modules from Protein-Protein Interaction Network

  • Wu, Zikai;Zhao, Xingming;Chen, Luonan
    • Molecules and Cells
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    • 제27권3호
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    • pp.271-277
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    • 2009
  • Proteins interact with each other within a cell, and those interactions give rise to the biological function and dynamical behavior of cellular systems. Generally, the protein interactions are temporal, spatial, or condition dependent in a specific cell, where only a small part of interactions usually take place under certain conditions. Recently, although a large amount of protein interaction data have been collected by high-throughput technologies, the interactions are recorded or summarized under various or different conditions and therefore cannot be directly used to identify signaling pathways or active networks, which are believed to work in specific cells under specific conditions. However, protein interactions activated under specific conditions may give hints to the biological process underlying corresponding phenotypes. In particular, responsive functional modules consist of protein interactions activated under specific conditions can provide insight into the mechanism underlying biological systems, e.g. protein interaction subnetworks found for certain diseases rather than normal conditions may help to discover potential biomarkers. From computational viewpoint, identifying responsive functional modules can be formulated as an optimization problem. Therefore, efficient computational methods for extracting responsive functional modules are strongly demanded due to the NP-hard nature of such a combinatorial problem. In this review, we first report recent advances in development of computational methods for extracting responsive functional modules or active pathways from protein interaction network and microarray data. Then from computational aspect, we discuss remaining obstacles and perspectives for this attractive and challenging topic in the area of systems biology.

Geolocation Spectrum Database Assisted Optimal Power Allocation: Device-to-Device Communications in TV White Space

  • Xue, Zhen;Shen, Liang;Ding, Guoru;Wu, Qihui
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제9권12호
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    • pp.4835-4855
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    • 2015
  • TV white space (TVWS) is showing promise to become the first widespread practical application of cognitive technology. In fact, regulators worldwide are beginning to allow access to the TV band for secondary users, on the provision that they access the geolocation database. Device-to-device (D2D) can improve the spectrum efficiency, but large-scale D2D communications that underlie TVWS may generate undesirable interference to TV receivers and cause severe mutual interference. In this paper, we use an established geolocation database to investigate the power allocation problem, in order to maximize the total sum throughput of D2D links in TVWS while guaranteeing the quality-of-service (QoS) requirement for both D2D links and TV receivers. Firstly, we formulate an optimization problem based on the system model, which is nonconvex and intractable. Secondly, we use an effective approach to convert the original problem into a series of convex problems and we solve these problems using interior point methods that have polynomial computational complexity. Additionally, we propose an iterative algorithm based on the barrier method to locate the optimal solution. Simulation results show that the proposed algorithm has strong performance with high approximation accuracy for both small and large dimensional problems, and it is superior to both the active set algorithm and genetic algorithm.

최적 배양 조건을 이용한 CO2 제거 목적의 담수 미세조류 Parachlorella kessleri의 바이오매스 생산성 향상 (Enhanced Biomass Productivity of Freshwater microalga, Parachlorella kessleri for Fixation of Atmospheric CO2 Using Optimal Culture Conditions)

  • 김지훈;홍선우;김진우;손병락;김미경;김용환;설진현;전수환
    • 한국해양바이오학회지
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    • 제16권1호
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    • pp.36-44
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    • 2024
  • This study attempted to improve the growth of the freshwater microalgae, Parachlorella kessleri, through the sequential optimization of culture conditions. This attempt aimed to enhance the microalgae's ability to fixate atmospheric CO2. Culture temperature and light intensity appropriate for microalgal growth were scanned using a high-throughput photobioreactor system. The supplied air flow rate varied from 0.05 to 0.3 vvm, and its effect on the growth rate of P. kessleri was determined. Next, sodium phosphate buffer was added to the culture medium (BG11) to enhance CO2 fixation by increasing the availability of CO2(HCO3-) in the culture medium. The results indicated that optimal culture temperature and light intensity were 20℃-25℃ and 300 μE/m2/s, respectively. Growth rates of P. kessleri under various air flow rates highly depended on the increase of the culture's flow rate and pH which determines CO2 availability. Adding sodium phosphate buffer to BG11 to maintain a constant neutral pH (7.0) improved microalgal growth compared to control conditions (BG11 without sodium phosphate). These results indicate that the CO2 fixation rate in the air could be enhanced via the sequential optimization of microalgal culture conditions.

Engineered microdevices for single cell immunological assay

  • Choi, Jong-Hoon
    • Interdisciplinary Bio Central
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    • 제2권2호
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    • pp.1.1-1.8
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    • 2010
  • Microdevices have been used as effective experimental tools for the rapid and multiplexed analysis of individual cells in single-cell assays. Technological advances for miniaturizing such systems and the optimization of delicate controls in micron-sized space homing cells have motivated many researchers from diverse fields (e.g., cancer research, stem cell research, therapeutic agent development, etc.) to employ microtools in their scientific research. Microtools allow high-throughput, multiplexed analysis of single cells, and they are not limited by the lack of large samples. These characteristics may significantly benefit the study of immune cells, where the number of cells available for testing is usually limited. In this review, I present an overview of several microtools that are currently available for single-cell analyses in two popular formats: microarrays and microfluidic microdevices. Then, I discuss the potential to study human immunology on the single-cell level, and I highlight several recent examples of immunoassays performed with single-cell microdevice assays. Finally, I discuss the outlook for the development of optimized assay platforms to study human immune cells. The development and application of microdevices for studies on single immune cells presents novel opportunities for the qualitative and quantitative characterization of immune cells and may lead to a comprehensive understanding of fundamental aspects of human immunology.

A Study of Fronthaul Networks in CRANs - Requirements and Recent Advancements

  • Waqar, Muhammad;Kim, Ajung;Cho, Peter K.
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제12권10호
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    • pp.4618-4639
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    • 2018
  • One of the most innovative paradigms for the next-generation of wireless cellular networks is the cloud-radio access networks (C-RANs). In C-RANs, base station functions are distributed between the remote radio heads (RHHs) and base band unit (BBU) pool, and a communication link is defined between them which is referred as the fronthaul. This leveraging link is expected to reduce the CAPEX (capital expenditure) and OPEX (operating expense) of envisioned cellular architectures as well as improves the spectral and energy efficiencies, provides the high scalability, and efficient mobility management capabilities. The fronthaul link carries the baseband signals between the RRHs and BBU pool using the digital radio over fiber (RoF) based common public radio interface (CPRI). CPRI based optical links imposed stringent synchronization, latency and throughput requirements on the fronthaul. As a result, fronthaul becomes a hinder in commercial deployments of C-RANs and is seen as one of a major bottleneck for backbone networks. The optimization of fronthaul is still a challenging issue and requires further exploration at industrial and academic levels. This paper comprehensively summarized the current challenges and requirements of fronthaul networks, and discusses the recently proposed system architectures, virtualization techniques, key transport technologies and compression schemes to carry the time-sensitive traffic in fronthaul networks.

미세채널 전사성 향상을 위한 사출성형 공정최적화 기초연구 (A study on the process optimization of injection molding for replicability enhancement of micro channel)

  • 고영배;김종선;유재원;민인기;김종덕;윤경환;황철진
    • Design & Manufacturing
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    • 제2권1호
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    • pp.45-50
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    • 2008
  • Micro channel is to fabricate desired pattern on the polymer substrate by pressing the patterned mold against the substrate which is heated above the glass transition temperature, and it is a high throughput fabrication method for bio chip, optical microstructure, etc. due to the simultaneous large area patterning. However, the bad pattern fidelity in large area patterning is one of the obstacles to applying the hot embossing technology for mass production. In the present study, stamper of cross channel with width $100{\mu}m$ and height $50{\mu}m$ was manufactured using UV-LiGA process. Micro channel was manufactured using stamper manufactured in this study. Also replicability appliance was evaluated for micro channel and factors affected replicability were investigated using Taguchi method.

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Optimization of In-vivo Monitoring Program for Radiation Emergency Response

  • Ha, Wi-Ho;Kim, Jong Kyung
    • Journal of Radiation Protection and Research
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    • 제41권4호
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    • pp.333-338
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    • 2016
  • Background: In case of radiation emergencies, internal exposure monitoring for the members of public will be required to confirm internal contamination of each individual. In-vivo monitoring technique using portable gamma spectrometer can be easily applied for internal exposure monitoring in the vicinity of the on-site area. Materials and Methods: In this study, minimum detectable doses (MDDs) for $^{134}Cs$, $^{137}Cs$, and $^{131}I$ were calculated adjusting minimum detectable activities (MDAs) from 50 to 1,000 Bq to find out the optimal in-vivo counting condition. DCAL software was used to derive retention fraction of Cs and I isotopes in the whole body and thyroid, respectively. A minimum detect-able level was determined to set committed effective dose of 0.1 mSv for emergency response. Results and Discussion: We found that MDDs at each MDA increased along with the elapsed time. 1,000 Bq for $^{134}Cs$ and $^{137}Cs$, and 100 Bq for $^{131}I$ were suggested as optimal MDAs to provide in-vivo monitoring service in case of radiation emergencies. Conclusion: In-vivo monitoring program for emergency response should be designed to achieve the optimal MDA suggested from the present work. We expect that a reduction of counting time compared with routine monitoring program can achieve the high throughput system in case of radiation emergencies.