• KSBB Journal
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• v.26 no.2
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• pp.131-138
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• 2011

Some computational approaches are needed for clarifying RNAi sequences, because it takes much time and endeavor that almost of RNAi sequences are verified by experimental data. Incorrectness of RNAi mechanism and other unaware factors in organism system are frequently faced with questions regarding potential use of RNAi as therapeutic applications. Our massive parallelized pair alignment scoring between dsRNA in Genebank and expressed sequence tags (ESTs) in Caenorhabditis elegans Genome Sequencing Projects revealed that this provides a useful tool for the prediction of RNAi induced cosuppression details for practical use. This pair alignment scoring method using high performance computing exhibited some possibility that numerous unwanted gene silencing and cosuppression exist even at high matching scores each other. The classifying the relative higher matching score of them based on GO (Gene Ontology) system could present mapping dsRNA of C. elegans and functional roles in an applied system. Our prediction also exhibited that more than 78% of the predicted co-suppressible genes are located in the ribosomal spot of C. elegans.

• The Journal of the Korea Contents Association
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• v.15 no.7
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• pp.1-11
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• 2015

In recent high performance computing system, GPGPU has been widely used to process general-purpose applications as well as graphics applications, since GPU can provide optimized computational resources for massive parallel processing. Unfortunately, GPGPU doesn't exploit computational resources on GPU in executing general-purpose applications fully, because the applications cannot be optimized to GPU architecture. Therefore, we provide GPU research guideline to improve the performance of computing systems using GPGPU. To accomplish this, we analyze the negative factors on GPU performance. In this paper, in order to clearly classify the cause of the negative factors on GPU performance, GPU core status are defined into 5 status: fully active status, partial active status, idle status, memory stall status and GPU core stall status. All status except fully active status cause performance degradation. We evaluate the ratio of each GPU core status depending on the characteristics of benchmarks to find specific reasons which degrade the performance of GPU. According to our simulation results, partial active status, idle status, memory stall status and GPU core stall status are induced by computational resource underutilization problem, low parallelism, high memory requests, and structural hazard, respectively.

• KIPS Transactions on Computer and Communication Systems
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• v.9 no.9
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• pp.197-206
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• 2020

Collaborative research in science applications based on HPC service needs rapid transfers of massive data between research colleagues over wide area network. With regard to this requirement, researches on enhancing data transfer performance between major superfacilities in the U.S. have been conducted recently. In this paper, we deploy multiple data transfer nodes(DTNs) over high-speed science networks in order to move rapidly large amounts of data in the parallel filesystem of KISTI's Nurion supercomputer, and perform transfer experiments between endpoints with approximately 130ms round trip time. We have shown the results of transfer throughput in different size file sets and compared them. In addition, it has been confirmed that the DTN cluster with three nodes can provide about 1.8 and 2.7 times higher transfer throughput than a single node in two types of concurrency and parallelism settings.

• KSII Transactions on Internet and Information Systems (TIIS)
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• v.10 no.9
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• pp.4467-4486
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• 2016

Discrete cosine transform (DCT) based JPEG standard significantly improves the coding efficiency of image compression, but it is unacceptable event in serious blocking artifacts at low bit rate and low efficiency of high-definition image. In the light of all phase digital filtering theory, this paper proposes a novel transform based on discrete sine transform (DST), which is called all phase discrete sine biorthogonal transform (APDSBT). Applying APDSBT to JPEG scheme, the blocking artifacts are reduced significantly. The reconstructed image of APDSBT-JPEG is better than that of DCT-JPEG in terms of objective quality and subjective effect. For improving the efficiency of JPEG coding, the structure of JPEG is analyzed. We analyze key factors in design and evaluation of JPEG compression on the massive parallel graphics processing units (GPUs) using the compute unified device architecture (CUDA) programming model. Experimental results show that the maximum speedup ratio of parallel algorithm of APDSBT-JPEG can reach more than 100 times with a very low version GPU. Some new parallel strategies are illustrated in this paper for improving the performance of parallel algorithm. With the optimal strategy, the efficiency can be improved over 10%.

• Journal of the Korea Society of Computer and Information
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• v.29 no.4
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• pp.9-21
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• 2024

Deep learning has been developing rapidly in recent years, with many researchers working to utilize large language models in various domains. However, there are practical difficulties that developing and utilizing language models require massive data and high-performance computing resources. Therefore, in-context learning, which utilizes prompts to learn efficiently, has been introduced, but there needs to be clear criteria for effective prompts for learning. In this study, we propose a methodology for enhancing prompt-based learning performance by improving the PET technique, which is one of the contextual learning methods, to select PVPs that are similar to the context of existing data. To evaluate the performance of the proposed methodology, we conducted experiments with 30,100 restaurant review datasets collected from Yelp, an online business review platform. We found that the proposed methodology outperforms traditional PET in all aspects of accuracy, stability, and learning efficiency.

• Journal of KIISE:Computing Practices and Letters
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• v.7 no.5
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• pp.510-521
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• 2001

Image retrieval system should be construct for searching fast, efficient image be extract the accurate feature information of image with more massive and more complex characteristics. Image retrieval system are essential differences between image databases and traditional databases. These differences lead to interesting new issues in searching of image, data modeling. So, cause us to consider new generation method of database, efficient retrieval method of image. In this paper, To extract feature information of edge using in searching from input image, we was performed to extract the edge by convolution Laplacian mask and input image, and we implemented the annotation-based and content-based image retrieval system for searching fast, efficient image by generation image database from extracting feature information of edge and metadata. We can improve the performance of the image contents retrieval, because the annotation-based and content-based image retrieval system is using image index which is made up of the content-based edge feature extract information represented in the low level of image and annotation-based edge feature information represented in the high level of image. As a conclusion, image retrieval system proposed in this paper is possible the accurate management of the accumulated information for the image contents and the information sharing and reuse of image because the proposed method do construct the image database by metadata.

• Journal of KIISE:Computing Practices and Letters
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• v.7 no.6
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• pp.661-683
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• 2001

There is a rapid increase in the use of digital video information in recent years, it becomes more important to manage video databases efficiently. The development of high speed data network and digital techniques has emerged new multimedia applications such as internet broadcasting, Video On Demand(VOD) combined with video data processing and computer. Video database should be construct for searching fast, efficient video be extract the accurate feature information of video with more massive and more complex characteristics. Video database are essential differences between video databases and traditional databases. These differences lead to interesting new issues in searching of video, data modeling. So, cause us to consider new generation method of database, efficient retrieval method of video. In this paper, We propose the construction and generation method of the video database based on contents which is able to accumulate the meaningful structure of video and the prior production information. And by the proposed the construction and generation method of the video database implemented the video database which can produce the new contents for the internet broadcasting centralized on the video database. For this production, We proposed the video indexing method which integrates the annotation-based retrieval and the content-based retrieval in order to extract and retrieval the feature information of the video data using the relationship between the meaningful structure and the prior production information on the process of the video parsing and extracting the representative key frame. We can improve the performance of the video contents retrieval, because the integrated video indexing method is using the content-based metadata type represented in the low level of video and the annotation-based metadata type impressed in the high level which is difficult to extract the feature information of the video at he same time.

• Journal of Intelligence and Information Systems
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• v.20 no.2
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• pp.109-122
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• 2014

People are nowadays creating a tremendous amount of data on Social Network Service (SNS). In particular, the incorporation of SNS into mobile devices has resulted in massive amounts of data generation, thereby greatly influencing society. This is an unmatched phenomenon in history, and now we live in the Age of Big Data. SNS Data is defined as a condition of Big Data where the amount of data (volume), data input and output speeds (velocity), and the variety of data types (variety) are satisfied. If someone intends to discover the trend of an issue in SNS Big Data, this information can be used as a new important source for the creation of new values because this information covers the whole of society. In this study, a Twitter Issue Tracking System (TITS) is designed and established to meet the needs of analyzing SNS Big Data. TITS extracts issues from Twitter texts and visualizes them on the web. The proposed system provides the following four functions: (1) Provide the topic keyword set that corresponds to daily ranking; (2) Visualize the daily time series graph of a topic for the duration of a month; (3) Provide the importance of a topic through a treemap based on the score system and frequency; (4) Visualize the daily time-series graph of keywords by searching the keyword; The present study analyzes the Big Data generated by SNS in real time. SNS Big Data analysis requires various natural language processing techniques, including the removal of stop words, and noun extraction for processing various unrefined forms of unstructured data. In addition, such analysis requires the latest big data technology to process rapidly a large amount of real-time data, such as the Hadoop distributed system or NoSQL, which is an alternative to relational database. We built TITS based on Hadoop to optimize the processing of big data because Hadoop is designed to scale up from single node computing to thousands of machines. Furthermore, we use MongoDB, which is classified as a NoSQL database. In addition, MongoDB is an open source platform, document-oriented database that provides high performance, high availability, and automatic scaling. Unlike existing relational database, there are no schema or tables with MongoDB, and its most important goal is that of data accessibility and data processing performance. In the Age of Big Data, the visualization of Big Data is more attractive to the Big Data community because it helps analysts to examine such data easily and clearly. Therefore, TITS uses the d3.js library as a visualization tool. This library is designed for the purpose of creating Data Driven Documents that bind document object model (DOM) and any data; the interaction between data is easy and useful for managing real-time data stream with smooth animation. In addition, TITS uses a bootstrap made of pre-configured plug-in style sheets and JavaScript libraries to build a web system. The TITS Graphical User Interface (GUI) is designed using these libraries, and it is capable of detecting issues on Twitter in an easy and intuitive manner. The proposed work demonstrates the superiority of our issue detection techniques by matching detected issues with corresponding online news articles. The contributions of the present study are threefold. First, we suggest an alternative approach to real-time big data analysis, which has become an extremely important issue. Second, we apply a topic modeling technique that is used in various research areas, including Library and Information Science (LIS). Based on this, we can confirm the utility of storytelling and time series analysis. Third, we develop a web-based system, and make the system available for the real-time discovery of topics. The present study conducted experiments with nearly 150 million tweets in Korea during March 2013.