• Title/Summary/Keyword: HP1

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In silico annotation of a hypothetical protein from Listeria monocytogenes EGD-e unfolds a toxin protein of the type II secretion system

  • Maisha Tasneem;Shipan Das Gupta;Monira Binte Momin;Kazi Modasser Hossain;Tasnim Binta Osman;Fazley Rabbi
    • Genomics & Informatics
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    • v.21 no.1
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    • pp.7.1-7.11
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    • 2023
  • The gram-positive bacterium Listeria monocytogenes is an important foodborne intracellular pathogen that is widespread in the environment. The functions of hypothetical proteins (HP) from various pathogenic bacteria have been successfully annotated using a variety of bioinformatics strategies. In this study, a HP Imo0888 (NP_464414.1) from the Listeria monocytogenes EGD-e strain was annotated using several bioinformatics tools. Various techniques, including CELLO, PSORTb, and SOSUIGramN, identified the candidate protein as cytoplasmic. Domain and motif analysis revealed that the target protein is a PemK/MazF-like toxin protein of the type II toxin-antitoxin system (TAS) which was consistent with BLASTp analysis. Through secondary structure analysis, we found the random coil to be the most frequent. The Alpha Fold 2 Protein Structure Prediction Database was used to determine the three-dimensional (3D) structure of the HP using the template structure of a type II TAS PemK/MazF family toxin protein (DB ID_AFDB: A0A4B9HQB9) with 99.1% sequence identity. Various quality evaluation tools, such as PROCHECK, ERRAT, Verify 3D, and QMEAN were used to validate the 3D structure. Following the YASARA energy minimization method, the target protein's 3D structure became more stable. The active site of the developed 3D structure was determined by the CASTp server. Most pathogens that harbor TAS create a crucial risk to human health. Our aim to annotate the HP Imo088 found in Listeria could offer a chance to understand bacterial pathogenicity and identify a number of potential targets for drug development.

Effect of High Pressure after the Addition of Vegetable Oil on the Safety and Quality of Beef Loin (식물성 유지 첨가 후 초고압 처리가 우육의 안전성 및 육질에 미치는 영향)

  • Jung, Yeon-Kook;Jung, Samooel;Lee, Hyun-Jung;Kang, Min-Gu;Lee, Soo-Kee;Kim, Yun-Ji;Jo, Cheorun
    • Food Science of Animal Resources
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    • v.32 no.1
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    • pp.68-76
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    • 2012
  • Olive oil and grape seed oil (10% of meat weight) were added to a package of beef loin. The package was then vacuum-sealed, and high pressure was applied (HP, 600 MPa) to investigate the effect of the penetration of vegetable oil into meat and safety and quality of the meat. Non-HP (0.1 MPa) without any oil treatment was considered as a control. The color $L^*$ and $b^*$-values of beef loin were higher and the $a^*$-value was lower than those of the control after HP at 600 MPa. The total aerobic bacterial number was 3 Log CFU/g in the control but no viable cell was detected in the beef with 600 MPa. All inoculated E. coli and L. monocytogenes were inactivated by HP. The beef loin with vegetable oil added without HP did not show any difference in fatty acid composition, but that treated by HP showed a higher oleic and linoleic acid content when olive oil and grape seed oil were added, respectively. The addition of olive oil inhibited lipid oxidation, and sensory evaluation revealed that there was no difference among treatments. The results indicate that the addition of vegetable oil followed by the application of HP enhances the safety of beef loin, changing the fatty acid composition in a health beneficial way. In addition, the use of olive oil can inhibit lipid oxidation induced by HP.

Reduction of hexavalent chromium by pseudomonas aeruginosa HP014

  • Oh, Young-Sook;Choi, Sung-Chan
    • Journal of Microbiology
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    • v.35 no.1
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    • pp.25-29
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    • 1997
  • Microbial reduction of hexavalent (VI) to trivalent (III) chromium decreases its toxicity by two orders of magnitude. In order to investigate the nature of Cr-reduction, Cr-resistant Pseudomonas aeruginosa HP014 was isolated and tested for its reduction capability. At the concentration of 0.5 mM Cr(VI), cell growth was not inhibited by the presence of Cr(VI) in a liquid medium, and Cr(VI) reduction was accompanied by ell growth. When cell-free extract was tested, the reduction of Cr(VI) showed a saturation kinetics with the maximum specific activity of 0.33 .mu.mol min$\^$-1/ mg$\^$-1/ cell protein, and an apparent K. of 1.73 mM Cr(VI). The activity required either NADH or NADPH as an electron donor. However, NADPH gave 50% as mush activity as sequently the supernatant and pelleted membrane fractions were tested for Cr(VI) reduction activity. The supernatant of the centrifugation showed almost the same Cr(VI) reduction activity as compared with that of the cell-free extract, indicating that the Cr(VI)-reducing activity of P. aeruginosa HP-14 is due to soluble enzyme. Moreover, the activity appeared to be the highest among the known activities, suggesting that the strain might be useful for remediation of Cr(VI)-contaminated sites.

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Immobilization of Hansenula polymorpha Alcohol Oxidase for Alcohol Biosensor Applications

  • Chung, Hyun-Jung;Cho, Hyun-Young;Kong, Kwang-Hoon
    • Bulletin of the Korean Chemical Society
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    • v.30 no.1
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    • pp.57-60
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    • 2009
  • Alcohol oxidase catalyzes the oxidation of short lines alcohol to aldehyde. In this study, alcohol oxidase from Hansenula polymorpha (HpAOD) was induced by addition of 0.5% methanol as the carbon source and purified to electrophoretic homogeneity by column chromatographies. The purified HpAOD was immobilized with DEAE-cellulose particles and its biochemical properties were compared with those of free enzyme. The substrate specificity and the optimum pH of immobilized enzyme were similar to those of free enzyme. On the other hand, the Km values of free and immobilized enzymes for ethanol were 6.66 and 14.65 mM, respectively. The optimum temperature for free enzyme was ${50^{\circ}C}$, whereas that for immobilized enzyme was ${65^{\circ}C}$. Immobilized enzyme showed high stability against long storage. Immobilized enzyme was also tested for the enzymatic determination of ethanol by the colorimetric method. We detected 1 mg/liter ethanol ($1{\times}10^{-4}$% ethanol) by 2,6- dichloroindophenol system. Therefore, the present study demonstrated that immobilized HpAOD has high substrate specificity toward ethanol and storage stability, which may be of considerable interest for alcohol biosensor and industrial application.

Optimal Design of VCO Using Spiral Inductor (나선형 인덕터를 이용한 VCO 최적설계)

  • Kim, Yeong-Seok;Park, Jong-Uk;Kim, Chi-Won;Bae, Gi-Seong;Kim, Nam-Su
    • Journal of the Institute of Electronics Engineers of Korea SD
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    • v.39 no.5
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    • pp.8-15
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    • 2002
  • We optimally designed the VCO(voltage-controlled oscillator) with spiral inductor using the MOSIS HP 0.5${\mu}{\textrm}{m}$ CMOS process. With the developed SPICE model of spiral inductor, the quality factor of spiral inductor was maximized at the operating frequency by varying the layout parameters, e.g., metal width, number of turns, radius, space of the metal lines. For the operation frequency of 2㎓, the inductance of about 3nH, and the MOSIS HP 0.5 CMOS process with the metal thickness of 0.8${\mu}{\textrm}{m}$, oxide thickness of 3${\mu}{\textrm}{m}$, the optimal width of metal lines is about 20${\mu}{\textrm}{m}$ for the maximum Quality factor. With the optimized spiral inductor, the VCO with LC tuning tank was designed, fabricated and measured. The measurements were peformed on-wafer using the HP8593E spectrum analyzer. The oscillation frequency was about 1.610Hz, the frequency variation of 250MHz(15%) with control voltage of 0V - 2V, and the phase noise of -108.4㏈c(@600KHz) from output spectrum.

Effects of Electron Beam Irradiation and High-Pressure Treatment with Citrus Peel Extract on the Microbiological, Chemical and Sensory Qualities of Marinated Chicken Breast Meat

  • Kim, Hyun-Joo;Alahakoon, Amali U.;Jayasena, Dinesh D.;Khan, Muhammad I.;Nam, Ki Chang;Jo, Cheorun;Jung, Samooel
    • Korean Journal of Poultry Science
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    • v.42 no.3
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    • pp.215-221
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    • 2015
  • Chicken breast meat samples were injected with marinade solution (salt, sugar, phosphate, monosodium glutamate, and nucleic acid) with or without 2% citrus peel extract (CPE), and then a subset were irradiated with a 1 or 2 kGy electron beam (EB) and/or subjected to high-pressure (HP) at 300 or 400 MPa. The initial total aerobic bacterial (TAB) count of the control sample was 4.57 log CFU/g and reached 7.17 log CFU/g after 3 days of storage at $4^{\circ}C$. The 2 kGy EB reduced the TAB count to 4.61 log CFU/g after 7 days. The 400 MPa HP treatment was also effective in reducing the TAB count, but the effect was slightly less than that noted with the 2 kGy EB. The CPE, in combination with the EB and HP, decreased the TAB count by 1.71 and 1.32 log CFU/g at the initial stage and further decreased the count during storage. The 2 kGy EB and the HP (300 and 400 MPa) increased the thiobarbituric acid-reactive substances value, whereas the CPE did not show an antioxidative effect. The EB and HP caused no difference in the sensory qualities. In contrast, the CPE decreased all sensory qualities tested. Sensory panelists commented that the samples with CPE were not in the "rejection" category but were "unfamiliar" for chicken breast meat. In conclusion, the EB was more effective than HP in improving the microbial quality of marinated chicken breast meat. The use of CPE in the marinade solution may synergistically increase the shelf life; however, it is necessary to develop an appropriate formulation to ensure that the sensory qualities are maintained.

Development of Automatic Calibration System of Digital Multimeter(HP 3458A) (Digital Multimeter(HP 3458A)의 자동교정시스템 개발)

  • Jung, J.K.;Kang, J.H.;Kim, K.T.;Ryu, J.C.;Yu, K.M.;Kim, H.J.;Park, Y.T.
    • Proceedings of the KIEE Conference
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    • 2002.07b
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    • pp.915-916
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    • 2002
  • 최근 산업체 및 국가교정검사기관에서 교정용 표준기급으로 많이 사용하고 있는 Digital Multimeter(HP 3458A)의 수동교정과 불확도 평가후 성적서 발급까지 5시간 정도가 소요된다. 이러한 교정시간을 단축시키고 객관적인 양질의 교정data를 얻을수 있는 교정자동화 프로그램을 개발하였다. 이 프로그램은 Labview를 이용하여 작성하였고 교정부터 불확도평가후 성적서 발급까지 자동적으로 1시간내에 수행이 된다. 또한 기존의 수동교정에 의한 결과와 비교했을 때 불화도 범위 내에서 동일한 결과를 얻었다.

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Integrity Assessment of Stationary Blade Ring for Nuclear Power Plant (원자력 발전소용 블레이드링 건전성 평가)

  • Park, Jung-Yong;Chung, Yong-Keun;Park, Jong-Jin;Kang, Yong-Ho
    • Proceedings of the KSME Conference
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    • 2004.11a
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    • pp.85-89
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    • 2004
  • The inner side between HP stationary blades in #1 turbine of Nuclear Power Plant A is damaged by the FAC(flow assisted corrosion) which is exposed to moisture. For many years the inner side is repaired by welding the damaged part, however, FAC continues to deteriorate the original material of the welded blade ring. In this study, we have two stages to verify the integrity of stationary blade ring in nuclear power plant A. In the stage I, replication of blade ring is performed to survey the microstructure of blade ring. In the stage II, the stress analysis of blade ring is performed to verify the structural safety of blade ring. Throughout the two stages analysis of blade ring, the stationary blade ring had remained undamaged.

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Study on Characteristics of the $Nb_{3}$Sn Strand for KSTAR Superconducting Magnets (KSTAR 초전도자석용 Nb3Sn 선재 특성 연구)

  • 최현정;김기만;김용진;방성근;윤천석;이재용;김명규;이상일;백설희
    • Proceedings of the Korea Institute of Applied Superconductivity and Cryogenics Conference
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    • 1999.02a
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    • pp.39-42
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    • 1999
  • The characteristics of Nb3Sn strands shich will be used for the been investigated. The physics requirements for the KSTAR operation demands the two conditions, high non-Cu critical current density and low contradictory to each other. It is recent that superconductor manufacturers. IGC and Mitsubishi, have succeded in the production of the strand which satisfies the ITER HP-1 and HP-2 conditions at the same time. It has been determined that this type of strand, so-called HP-3, will be used for the KSTAR magnets and its properties, critical current density and hysteresis loss investigated by the several institutes are presented here. On the basis of the round robin tests for many strand samples under various optimized and the vendor will be seleted.

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Therapeutic effects of Hominis placenta herb-acupuncture in adjuvant-induced arthritis rat (흰쥐의 Adjuvant 관절염에 대한 자하거(紫河車) 약침의 효과)

  • Yeom, Mi-Jung;Kang, Ji-Eun;Hahm, Dae-Hyun;Park, Hi-Joon;H.Lee, Eun-Joo;Shim, In-Sop;Lee, Hye-Jung
    • Journal of Pharmacopuncture
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    • v.5 no.1 s.8
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    • pp.91-103
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    • 2002
  • Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disease. characterized by leukocyte infiltration, a chronic inflammation of the joint, a pannus formation and the extensive destruction of the 3Iticular caJ1ilage and bone. Several proinflammatory cytokines such as tumor necrosis factor-${\alpa}$(TNF-${\alpa}$), interleukin-1${\beta}$ (IL-1${\beta}$) and interleukin 6 (IL-6) have been implicated in the pathological mechanisms of synovial tissue proliferation, joint destruction and programmed cell death in rheumatoid joint. In the Korean traditional medicine, Hominis placenta (HP) as an herbal solution of herb-acupuncture has been widely used to treat the inflammatory diseases including RA. In order to study the medicinal effect of HP herb-acupuncture on rheumatoid joint, an adjuvant-induced arthritis (AlA) was generated by the injection of 1.5 mg uf Mycobactelium tuberculusis. emulsified in squalene, 10 the base of the tail of Sprague-Dawley(SD) rats. After onset stage of polyarthritis, HP was daily injected to the Zusanti (ST36) acupuncture points in both of rat lags and the expression pattems of cytokines such as TNF-{\alpa}$, IL-1${\beta}$, and 1L-6 at the knee joint were analyzed using immunostaining and RT-PCR. The HP herb-acupuncture was found to be effective to alleviate the arthritic symptums in adjuvant-induced arthritic rats as regards the joint appearance and the expression profiles of inflammatory cytokines. In conclusion, therapeutic effects of HP herb-acupuncture on the rat with AlA might be related to anti inflammatory activities of the hurb-acupuncture.