• Microbiology and Biotechnology Letters
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• v.40 no.3
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• pp.268-273
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• 2012

Microbial diversity analyses were performed in several geothermal areas in Indonesia using a culture-independent approach with 16S rRNA gene sequencing. All areas and the majority of samples were noted as being affiliated with Proteobacteria. In addition, unclassified bacteria with no phylum affiliation were detected at an incidence rate of 20.0-26.5% in every location. The majority groupings in the geothermal hot stream in Cisolok belonged to ${\beta}$-Proteobacteria (27.1%) and Cyanobacteria (11.0%), whereas the majority from the volcanic area in Kamojang was ${\gamma}$-Proteobacteria (51.5%) followed by Aquificales (12.9%). The predominant groups around an underwater thermal vent in the sea at Likupang were ${\gamma}$-Proteobacteria (33.3%) and then Bacteroidetes (27.6%). This detailed microbial community analyses of each area strongly support a possible association with plausible community groups and environmental habitats, such as extremely geothermal or marine habitats. This study has significantly contributed to the expansion of scientific knowledge of the microbial community in Indonesia.

• Journal of Ecology and Environment
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• v.36 no.3
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• pp.205-210
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• 2013

Cicuta virosa L. (Apiaceae) is a perennial emergent plant designated as an endangered species in South Korea. According to the former records, only four natural habitats remain in South Korea. A former study suggested that three of four populations (Pyeongchang: PC, Hoengseong: HS, Gunsan: GS) would be classified as different ecotypes based on their different morphological characteristics and life cycle under different environmental conditions. To evaluate this suggestion, we estimated genetic diversity in each population and distance among three populations by random amplification of polymorphic DNA. Seven random primers generated a total of 61 different banding positions, 36 (59%) of them were polymorphic. Nei's gene diversity and the Shannon diversity index increased in the order of PC < HS < GS, which is the same order of population size. In the two-dimensional (2D) plot of first two principal components in principal component analysis with the presence of 61 loci, individuals could be grouped as three populations easily (proportion of variance = 0.6125). Nei's genetic distance for the three populations showed the same tendency with the geographical distance within three populations. And it is also similar to the result of discriminant analysis with the morphological or life-cycle factors from the previous study. From the results, we concluded that three different populations of C. virosa should be classified as ecotypes based on not only morphology and phenology but genetic differences in terms of diversity and distance as well.

• Journal of the Korean Institute of Landscape Architecture International Edition
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• no.2
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• pp.109-113
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• 2004

It is important to consider urban parks and greenery not only from the viewpoint of amenity or aesthetics but also from the viewpoint of biodiversity. In this study, we focused on bryophytes (mosses), and analyzed how existence of artificial structures in urban greeney, such as concrete curbs and stone walls, affect species diversity of bryophytes. Kyoto Gyoen in Kyoto City, western Japan, was selected as the study site. In consideration of kinds of substrates on which bryophytes grow, microhabitats of Kyoto Gyoen were divided into ten types including concrete curbs and stone walls. In each type of microhabitats, we selected the area where bryophyte diversity was highest, and established a quadrat for bryophyte flora survey. Our results showed that the number of bryophyte species and growth forms and the value of diversity indices on concrete curbs or stone walls were higher than the averages of those. The bryophyte species were divided into the four groups by TWINSPAN as follows: Group A (epiphyte species), Group B (rocky species), Group C (roadsides, grassland or forest species), and Group D (waterside species). Bryophytes classified into Group B (rocky species) were mainly recorded on concrete curbs or stone walls. It was considered that the existence of artificial structures (concrete curbs and stone walls) provided favorite habitats for the bryophytes classified into Group B (rocky species), which mainly grows on concrete or rocks, and enhanced species diversity of bryophytes in Kyoto Gyoen.

• ALGAE
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• v.36 no.1
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• pp.13-24
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• 2021

The present-day genetic structure of macroalgal species reflects both geographical history and oceanic circulation patterns as well as anthropogenic introduction across native ranges. To precisely understand the genetic diversity and how the factors shape the current population structure of Gloiopeltis furcata sensu lato, we determined the mitochondrial 5' end of cytochrome c oxidase subunit I (COI-5P) sequences for 677 individuals sampled from 67 sites spanning almost the entire distribution range in Korea and Japan. Results from the phylogenetic analysis and haplotype distribution revealed eleven distinct lineages within G. furcata s.l. along the Korea-Japan coastal areas and displayed divergent phylogeographic patterns among lineages. Despite the closely related lineages distributed in same habitats as high rocky intertidal zone, they display different phylogeographic patterns among lineages. The populations from the south of Korea-Japan harbored the highest genetic diversity and unique endemism in comparison with other populations in the distribution range. This could be the evidence of southern refugia for G. furcata s.l. in the Northwest (NW) Pacific and the recent migration from native to introduced region. The reason is that an exceptional distribution pattern was found high genetic diversity in Hakodate of Japan where is the northern location in the NW Pacific. Our results imply the contemporary influence on the distribution due to current circulation pattern and anthropogenic effects. These phylogeographic findings provide the important insight into cryptic species diversity and the detailed distribution pattern of Gloiopeltis in the NW Pacific.

• Korean Journal of Plant Taxonomy
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• v.40 no.3
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• pp.135-144
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• 2010

This study intended to investigate environmental factors including soil and vegetation in order to understand the environmental and ecological characteristics of four different habitats of Abelia tyaihyoni. These habitats, according to investigations, are mostly located at elevations of 203 m to 297 m with angles of inclination ranging from 9 degrees to 17 degrees. The litter depth of habitats is 2 cm to 5 cm. A total of 113 vascular plant taxa are identified in seven quadrates of the four habitats. The life form of 113 species is H-$D_4$-$R_5$-e type. The importance value of Abelia tyaihyoni is 39.61%, and 4 highly ranked species such as Quercus dentata (6.27%), Spiraea blumei, Spiraea prunifolia for. simpliciflora (4.04%) and Ulmus davidiana var. japonica (3.84%) are considered to be an affinity with Abelia tyaihyoni in their habitats. The dominant species of woody plants in the four habitats are represented as Pinus densiflora (21.22%) and Quercus dentata (16.82%) in the subtree layer (T2), and Carex humilis var. nana (18.95%) and Carex lanceolata (17.63%) in the herbaceous layer (H). The degree of their average species diversity is 1.42, and that of dominance and evenness are 0.07 and 0.86, respectively. The type of soil is sandy loam, clay loam and loam, and the average field capacity of soil is 22.49%. Their average organic matter is 9.39%, soil pH 6.75, and available phosphorus is $1.23 {\mu}g/g$.

• Journal of agriculture & life science
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• v.52 no.6
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• pp.163-173
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• 2018

This study was carried out to propose the baseline data for in situ conservation by analyzing environmental and growth characteristics in Pedicularis hallaisanenesis habitats. P. hallaisanensis habitats, according to investigations, were located on the slope of southwest at an elevation of 1,400 m in Mt. Gayasan and on the slope of southeast at an elevation of 1,500 m in Mt. Hallasan. Pedicularishallaisanensis habitats. Also, habitats were found at the grassland with no upper vegetation. In the study sites, soil pH and soil organic matter were 4.9-6.5 and 4.4-8.1%, respectively. A total of 55 vascular plants taxa were identified in ten quadrats in two habitats, of which 25 were inhabited in Mt. Gayasan and 37 in Mt. Hallasan. Current status of P. hallaisanensis habitats were very vulnerable with the pressure of the vegetation constantly threatening the species' survival. Thus, concrete conservation plans including diverse factors as light intensity, temperature and genetic analysis to protect natural habitats should be set up as soon as possible.

• Journal of Species Research
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• v.8 no.2
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• pp.233-237
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• 2019

Mites in the family Veigaiidae, order Mesostigmata, subclass Acari are widely distributed in subsoil habitats. They are mostly free-living and predaceous on small arthropod eggs and larvae, and prefer habitats with rich organic matters including litter and humus layers of forest soil. The genus Veigaia Oudemans, 1905 of the family Veigaiidae (Acari: Mesostigmata) is one of the ubiquitous genera from the Holarctic Region. Until now, only two genera and five species of the family were recorded from Korea. Here we provide a report of the species Veigaia tibbetsi Farrier, 1957 with detailed redescription. Even though V. tibbetsi had appeared in some ecological literature, this is the first record of this species in Republic of Korea. This species was mostly found from pine forest(Pinus densiflora) of northeastern mountainous parts of the Korean Peninsula, in Gangwon and Gyeongbuk Provinces. We provided some ecological characteristics of the family Veigaiidae, which will help to further exploration of acarine biodiversity.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.19 no.2
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• pp.147-154
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• 2014

Bacteria play an important role in biogeochemical cycles in marine environments and their functional attributes in ecosystems depend primarily on species composition. In this study, seasonal variation of bacterial diversity was investigated by pyrosequencing of 16S rDNA in surface sediment and overlying seawater collected in the south East Sea, planned for the site of $CO_2$ sequestration by the carbon capture and storage (CCS) project. Gammaproteobacteria was dominant in the sediment in most seasons, whereas Alphaproteobacteria was a most dominant group in the overlying water. Thus, the bacterial diversity greatly differ between sediment and seawater samples. On the genus level, bacterial diversity between two habitats was also different. However, the number of genera found over 5% were less than 10 in both habitats and the bacterial community was composed of a number of diverse minor or rare genera. Elevation of $CO_2$ concentration during a $CO_2$ storage process, could result in change of bacterial diversity. Thus, this study will be very useful to access the effect of $CO_2$ on bacterial diversity and to predict functional change of the ecosystem during the process of CCS project.

• Korean Journal of Plant Resources
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• v.31 no.4
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• pp.384-395
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• 2018

This study was carried out to investigate the environment factors including community structure and soil characteristics in the wild habitats of Cephalotaxus koreana, and offers the basic information for habitats conservation and restoration. Most of the wild habitats were located at altitudes between 148~835 m with inclinations ranged as $12{\sim}32^{\circ}$. The average soil pH was 4.7~5.9, soil organic matter was 5.72~15.99%, cation exchange capacity was $14.1{\sim}19.9cmolc/kg^{-1}$ and exchangeable $K^+$, $Ca^{2+}$, $Mg^{2+}$ was 0.25~0.48 cmolc/kg, 0.79~6.68 cmolc/kg, 0.31~1.73 cmolc/kg, respectively. The dominant species of tree layer were found to be dominated by Quercus dentata in Jekbo-san (C1), Acer pictum in Bogae-san (C2), Acer pseudosieboldianum in Geumwon-san (C3), Q. serrata in Jiri-san (C4), Zelkova serrata in Baegun-san (C5), and Q. acutissima in Duryun-san (C6). The Species diversity (H') was 0.854~1.234, evenness (J') was 0.654~0.993, and dominance (D) was found to be 0.067~0.346. Correlation coefficients analysis based on environmental factors, community structure and value of species diversity shows that growth of Cephalotaxus koreana is correlated with species diversity and evenness. This result show that Cephalotaxus koreana habitats located in mature stands.

• Korean Journal of Environmental Biology
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• v.27 no.3
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• pp.314-322
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• 2009

Vegetation, environmental characteristics and soil analysis of Megaleranthis saniculifolia Ohwi habitats were investigated to propose the basal data for conservation and restoration. M. saniculifolia was distributed around an altitude of 770~1,440 m with an inclination of $0{\sim}20^{\circ}$, and mostly formed discontinuous populations in northern part of valley. The vascular plants from 78 quadrates of 11 habitats were identified 111 taxa. Importance value of M. saniculifolia was 27.05%, and highly ranked 5 species such as Veratrum oxysepalum (5.67%), Corydalis turtschaninovii (5.32%), Aruncus dioicus var. kamtschaticus (4.35%), Meehania urticifolia (4.06%) and Anemone koraiensis (3.91%) were considered to be an affinity with M. saniculifolia. Dominant species of woody plants in 78 quadrates were represented as Cornus controversa, Juglans mandshurica, Quercus mongolica, Acer pseudo-sieboldianum and A. mono in tree (B1) layer, A. pseudo-sieboldianum and Carpinus cordata in subtree (B2) layer, Deutzia glabrata and Prunus padus in shrub (S) layer. Average species diversity was 1.16, and dominance and evenness were found to be 0.12 and 0.81, respectively. Average field capacity was 26.41%, and the organic matter and soil pH were 7.83% and 5.83. Correlation coefficients based on environmental factors, vegetation and soil analysis were showed that the positive correlations between slope degrees and pH, slope degrees and organic matter, dominance and importance value, species diversity and richness, whereas between species diversity and dominance, and importance value and dominance were showed negative correlations.