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Mitochondrial DNA variation and phylogeography of native Mongolian goats

  • Ganbold, Onolragchaa;Lee, Seung-Hwan;Paek, Woon Kee;Munkhbayar, Munkhbaatar;Seo, Dongwon;Manjula, Prabuddha;Khujuu, Tamir;Purevee, Erdenetushig;Lee, Jun Heon
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.6
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    • pp.902-912
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    • 2020
  • Objective: Mongolia is one of a few countries that supports over 25 million goats, but genetic diversity, demographic history, and the origin of goat populations in Mongolia have not been well studied. This study was conducted to assess the genetic diversity, phylogenetic status and population structure of Mongolian native goats, as well as to discuss their origin together with other foreign breeds from different countries using hypervariable region 1 (HV1) in mtDNA. Methods: In this study, we examined the genetic diversity and phylogenetic status of Mongolian native goat populations using a 452 base-pair long fragment of HVI of mitochondrial DNA from 174 individuals representing 12 populations. In addition, 329 previously published reference sequences from different regions were included in our phylogenetic analyses. Results: Investigated native Mongolian goats displayed relatively high genetic diversities. After sequencing, we found a total of 109 polymorphic sites that defined 137 haplotypes among investigated populations. Of these, haplotype and nucleotide diversities of Mongolian goats were calculated as 0.997±0.001 and 0.0283±0.002, respectively. These haplotypes clearly clustered into four haplogroups (A, B, C, and D), with the predominance of haplogroup A (90.8%). Estimates of pairwise differences (Fst) and the analysis of molecular variance values among goat populations in Mongolia showed low genetic differentiation and weak geographical structure. In addition, Kazakh, Chinese (from Huanghuai and Leizhou), and Arabian (Turkish and Baladi breeds) goats had smaller genetic differentiation compared to Mongolian goats. Conclusion: In summary, we report novel information regarding genetic diversity, population structure, and origin of Mongolian goats. The findings obtained from this study reveal that abundant haplogroups (A to D) occur in goat populations in Mongolia, with high levels of haplotype and nucleotide diversity.

Estimation of Climatological Standard Deviation Distribution (기후학적 평년 표준편차 분포도의 상세화)

  • Kim, Jin-Hee;Kim, Soo-ock;Kim, Dae-jun
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.19 no.3
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    • pp.93-101
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    • 2017
  • The distribution of inter-annual variation in temperature would help evaluate the likelihood of a climatic risk and assess suitable zones of crops under climate change. In this study, we evaluated two methods to estimate the standard deviation of temperature in the areas where weather information is limited. We calculated the monthly standard deviation of temperature by collecting temperature at 0600 and 1500 local standard time from 10 automated weather stations (AWS). These weather stations were installed in the range of 8 to 1,073m above sea level within a mountainous catchment for 2011-2015. The observed values were compared with estimates, which were calculated using a geospatial correction scheme to derive the site-specific temperature. Those estimates explained 88 and 86% of the temperature variations at 0600 and 1500 LST, respectively. However, it often underestimated the temperatures. In the spring and fall, it tended to had different variance (e.g., increasing or decreasing pattern) from lower to higher elevation with the observed values. A regression analysis was also conducted to quantify the relationship between the standard deviation in temperature and the topography. The regression equation explained a relatively large variation of the monthly standard deviation when lapse-rate corrected temperature, basic topographical variables (e.g., slope, and aspect) and topographical variables related to temperature (e.g., thermal belt, cold air drainage, and brightness index) were used. The coefficient of determination for the regression analysis ranged between 0.46 and 0.98. It was expected that the regression model could account for 70% of the spatial variation of the standard deviation when the monthly standard deviation was predicted by using the minimum-maximum effective range of topographical variables for the area.

Geology and Ore Deposits in the Haman-Kunbuk Copper District (함안군북지구(咸安郡北地區)의 지질(地質)과 동광상(銅鑛床))

  • Moon, Chung Uk;Kim, Myung Whan;Lee, Ji Hern;Choi, Chung Jung
    • Economic and Environmental Geology
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    • v.3 no.2
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    • pp.55-73
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    • 1970
  • The district investigated covers the central and southern portions of the Uiryong Quadrangle amounting to $40km^2$ in area and is bounded approximately by geographical coordinates of $128^{\circ}$ 28' $40^{{\prime}{\prime}}{\sim}128^{\circ}$ 24' 25"E in longitude and $35^{\circ}10{\prime}{\sim}35^{\circ}14^{\prime}06^{{\prime}{\prime}}N$ in latitude. The purpose of this investigation was to provide basic information in drawing up a comprehensive development plan of the copper ore deposits known to exist in the HamanKumbuk district with special emphasis given to the ascertainment of geological and paragenetic characteristics. The area consists chiefly of shale, sandy shale and chert, all belong to Kyongsang System of Cretaceous age. Intruded into these rocks are andesite, granodiorite, basic dikes, and acidic dikes. The mineralization which took place in the area, consists of mostly fissure-filling vein deposits, numbering several tens, with varying magnitudes. The fissures and shear zones created in rocks, such as chert and granodiorite, hosted the deposition of mineralizing vapors and/or hydrothermal solutions along their openings. The strike lengths of these veins vary from 50 to 600 meters in extension and 0.1 to 3 meters in width. Although the degree of fluctuation in width is great, it averages 0.3m. The stuctural patterns, which apparently affected the deposition of veins, are fissure patterns, trend NS to $N30^{\circ}W$, and steep-pitching tension fractures as well as normal fault pattern. Ore minerals associated with vein matters are primarily chalcopyrite and small amounts of scheelite, cobaltiferous arsenopyrite, and gold and silver intimately associated with sulphide minerals. Associated with these ore mineral are pyrite, pyrrhotite, magnetite, specularite and arsenopyrite. Gangue minerals noted are quartz, calcite, chlorite, tourmaline and hornblende. In terms of the compositions of associated minerals, the vein deposits in the district could be grouped under the following four categories: 1. Pyrrhoitite, Arsenopyrite, Gold and Silver Bearing Copper Vein (Type I) 2. Calcite-Scheelite-Copper Vein (Type II) 3. Magnetite-Pyrite-Copper Vein (Type III) 4. Tourmaline Copper Vein (Type IV) Of the four types, the first and the fourth are presently yielding relatively higher grades: of copper ores and concentrates. The estimated ore reserves total some 222,000 metric tons with the following breakdown in terms of metal contents: Name of Mines Au(g/t) Ag(g/t) Cu(%) Reserves(M/T) Kunbuk 15.92 78.69 6,074 60.498 Cheil Kunbuk - - 1.040 60,847 Haman - - 2.688 101,204 222,549 As rehabilitation of old workings and/or exploration of veins at depth proceed, additional estimation of ore reserves may become apparent and necessary. With regard to the problem of beneficiation and upgrading of low-grade ores in the district, it would be advisable to make decisions on location, treating capacity and mill flowsheet after sufficient amount of exploration is completed as suggested in the report.

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Prediction of present and future distribution of the Schlegel's Japanese gecko (Gekko japonicus) using MaxEnt modeling

  • Kim, Dae-In;Park, Il-Kook;Bae, So-Yeon;Fong, Jonathan J.;Zhang, Yong-Pu;Li, Shu-Ran;Ota, Hidetoshi;Kim, Jong-Sun;Park, Daesik
    • Journal of Ecology and Environment
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    • v.44 no.1
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    • pp.33-40
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    • 2020
  • Background: Understanding the geographical distribution of a species is a key component of studying its ecology, evolution, and conservation. Although Schlegel's Japanese gecko (Gekko japonicus) is widely distributed in Northeast Asia, its distribution has not been studied in detail. We predicted the present and future distribution of G. japonicus across China, Japan, and Korea based on 19 climatic and 5 environmental variables using the maximum entropy (MaxEnt) species distribution model. Results: Present time major suitable habitats for G. japonicus, having greater than 0.55 probability of presence (threshold based on the average predicted probability of the presence records), are located at coastal and inland cities of China; western, southern, and northern coasts of Kyushu and Honshu in Japan; and southern coastal cities of Korea. Japan contained 69.3% of the suitable habitats, followed by China (27.1%) and Korea (4.2%). Temperature seasonality (66.5% of permutation importance) was the most important predictor of the distribution. Future distributions according to two climate change scenarios predicted that by 2070, and overall suitable habitats would decrease compared to the present habitats by 18.4% (scenario RCP 4.5) and 10.4% (scenario RCP 8.5). In contrast to these overall trends, range expansions are expected in inland areas of China and southern parts of Korea. Conclusions: Suitable habitats predicted for G. japonicus are currently located in coastal cities of Japan, China, and Korea, as well as in isolated patches of inland China. Due to climate change, suitable habitats are expected to shrink along coastlines, particularly at the coastal-edge of climate change zones. Overall, our results provide essential distribution range information for future ecological studies of G. japonicus across its distribution range.

Fresh Kills Park Design, Staten Island, New York (프레쉬 킬스 공원 조경설계)

  • Jeong Wook-Ju;James Corner
    • Journal of the Korean Institute of Landscape Architecture
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    • v.33 no.1 s.108
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    • pp.93-108
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    • 2005
  • Fresh Kills is the largest landfill in the world located in the west side of Staten Island, New York. The landfill served as a storage area for New York City's trash for more than 50 years. After years of civilian and political pressure, state and local legislation decided its closure of landfill operation in Fresh Kills in March 2001. Soon after, Department of City Planning announced a Fresh Kills international design com-petition: 'Landfill to Landscape'. The winning entry was promised to be outline for the redevelopment of the 2,200 acre site which the size of three times Central Park. Forty-eight teams representing more than 200 offices from around world submitted proposals, from which six finalists that mostly led by landscape architects were selected. In December 2001, a jury of architects, landscape architects and city officials unanimously selected Field Operations as the winner. The plan, named Lifescape, visualizes the gradual 20-year transformation of the whole Staten Island into a 'natural lifestyle island' recognizing that Staten Island is home to coastal wetlands that shelter one of the most diverse ecosystems in the New York metropolitan area. It suggested that an ecologically reconstituted Fresh Kills could become the center of integrated parks and greenways system on the island otherwise fragmented. The project will be one of the largest and most ambitious undertakings in the metropolis in years developing a complex web of habitats and parklands on top of mountain of trash. This study tries to achieve two goals: One is to provide general explanations on the project, Lifescape, breaking down to its background, geographical context, design concepts and phased development plan. Another is to introduce the unique and innovative design approaches by Field Operations that are different from a conventional landscape architectural attitude. Since this project was well published through many magazines and newspapers, main focus will be upon aspects that differentiate this project from usual landscape projects. Conceptually Lifescape brought provocative notions on nature/culture relationship and the role of urban park as an active agency rather than just a green rest area. Also this project introduced pioneering graphics like plan collage, diagrammatic plan, phasing diagram and photo montage as vehicles conveying information, imagination and provocation. Witnessing the influence of the project gradually in the field of academic and practice in the States, this study is intended to become a constructive reference to similar landscape projects dealing with large and complex urban context in conjunction with restructure of contemporary city.

Application of KOMSAT-2 Imageries for Change Detection of Land use and Land Cover in the West Coasts of the Korean Peninsula (서해연안 토지이용 및 토지피복 변화탐지를 위한 KOMPSAT-2 영상의 활용)

  • Sunwoo, Wooyeon;Kim, Daeun;Kang, Seokkoo;Choi, Minha
    • Korean Journal of Remote Sensing
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    • v.32 no.2
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    • pp.141-153
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    • 2016
  • Reliable assessment of Land Use and Land Cover (LULC) changes greatly improves many practical issues in hydrography, socio-geographical research such as the observation of erosion and accretion, coastal monitoring, ecological effects evaluation. Remote sensing imageries can offer the outstanding capability to monitor nature and extent of land and associated changes over time. Nowadays accurate analysis using remote sensing imageries with high spatio-temporal resolution is required for environmental monitoring. This study develops a methodology of mapping and change detection in LULC by using classified Korea Multi-Purpose Satellite-2 (KOMPSAT-2) multispectral imageries at Jeonbuk and Jeonnam provinces including protected tidal flats located in the west coasts of Korean peninsula from 2008 to 2015. The LULC maps generated from unsupervised classification were analyzed and evaluated by post-classification change detection methods. The LULC assessment in Jeonbuk and Jeonnam areas had not showed significant changes over time although developed area was gradually increased only by 1.97% and 4.34% at both areas respectively. Overall, the results of this study quantify the land cover change patterns through pixel based analysis which demonstrate the potential of multispectral KOMPSAT-2 images to provide effective and economical LULC maps in the coastal zone over time. This LULC information would be of great interest to the environmental and policy mangers for the better coastal management and political decisions.

Matching and Geometric Correction of Multi-Resolution Satellite SAR Images Using SURF Technique (SURF 기법을 활용한 위성 SAR 다중해상도 영상의 정합 및 기하보정)

  • Kim, Ah-Leum;Song, Jung-Hwan;Kang, Seo-Li;Lee, Woo-Kyung
    • Korean Journal of Remote Sensing
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    • v.30 no.4
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    • pp.431-444
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    • 2014
  • As applications of spaceborne SAR imagery are extended, there are increased demands for accurate registrations for better understanding and fusion of radar images. It becomes common to adopt multi-resolution SAR images to apply for wide area reconnaissance. Geometric correction of the SAR images can be performed by using satellite orbit and attitude information. However, the inherent errors of the SAR sensor's attitude and ground geographical data tend to cause geometric errors in the produced SAR image. These errors should be corrected when the SAR images are applied for multi-temporal analysis, change detection applications and image fusion with other sensor images. The undesirable ground registration errors can be corrected with respect to the true ground control points in order to produce complete SAR products. Speeded Up Robust Feature (SURF) technique is an efficient algorithm to extract ground control points from images but is considered to be inappropriate to apply to SAR images due to high speckle noises. In this paper, an attempt is made to apply SURF algorithm to SAR images for image registration and fusion. Matched points are extracted with respect to the varying parameters of Hessian and SURF matching thresholds, and the performance is analyzed by measuring the imaging matching accuracies. A number of performance measures concerning image registration are suggested to validate the use of SURF for spaceborne SAR images. Various simulations methodologies are suggested the validate the use of SURF for the geometric correction and image registrations and it is shown that a good choice of input parameters to the SURF algorithm should be made to apply for the spaceborne SAR images of moderate resolutions.

Evaluating Vulnerability to Snowfall Disasters Using Entropy Method for Overlapping Distributions of Vulnerable Factors in Busan, Korea (취약인자의 엔트로피 기반 중첩 분석을 이용한 부산광역시의 적설재해 취약지역 등급 평가)

  • An, ChanJung;Park, Yongmi;Choi, Wonsik
    • Korean Journal of Remote Sensing
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    • v.36 no.2_1
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    • pp.217-229
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    • 2020
  • Recently, weather changes in Korea have intensified due to global warming, and the five major natural disasters that occur mostly include heavy rains, typhoons, storms, heavy snow, and earthquakes. Busan is vulnerable to snow disaster, given that the amount of natural disaster damage in Busan accounts for more than 50% of the total amount in the entire metropolitan cities in Korea, and that the Busan area includes many hilly mountains. In this study, we attempted to identify vulnerable areas for snowfall disasters in Busan areas using the geographic information system (GIS) with the data for both geographical and anthropogenic characteristics. We produced the maps of vulnerable areas for evaluating factors that include altitude, slope, land cover, road networks, and demographics, and overlapped those maps to rank the vulnerability to snowfall disasters as the 5th levels finally. To weight each evaluating factor, we used an entropy method. The riskiest areas are characterized by being located in mountainous areas with roads, including Sansung-ro in Geumjeong-gu, Mandeok tunnel in Buk-gu, Hwangnyeongsan-ro in Suyeong-gu, and others, where road restrictions were actually enforced due to snowfall events in the past. This method is simple and easy to be updated, and thus we think this methodology can be adapted to identify vulnerable areas for other environmental disasters.

Diversity of vir Genes in Plasmodium vivax from Endemic Regions in the Republic of Korea: an Initial Evaluation

  • Son, Ui-han;Dinzouna-Boutamba, Sylvatrie-Danne;Lee, Sanghyun;Yun, Hae Soo;Kim, Jung-Yeon;Joo, So-Young;Jeong, Sookwan;Rhee, Man Hee;Hong, Yeonchul;Chung, Dong-Il;Kwak, Dongmi;Goo, Youn-Kyoung
    • Parasites, Hosts and Diseases
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    • v.55 no.2
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    • pp.149-158
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    • 2017
  • Variant surface antigens (VSAs) encoded by pir families are considered to be the key proteins used by many Plasmodium spp. to escape the host immune system by antigenic variation. This attribute of VSAs is a critical issue in the development of a novel vaccine. In this regard, a population genetic study of vir genes from Plasmodium vivax was performed in the Republic of Korea (ROK). Eighty-five venous blood samples and 4 of the vir genes, namely vir 27, vir 21, vir 12, and vir 4, were selected for study. The number of segregating sites (S), number of haplotypes (H), haplotype diversity (Hd), DNA diversity (${\pi}$ and ${\Theta}_w$), and Tajima's D test value were conducted. Phylogenetic trees of each gene were constructed. The vir 21 (S=143, H=22, Hd=0.827) was the most genetically diverse gene, and the vir 4 (S=6, H=4, Hd=0.556) was the opposite one. Tajima's D values for vir 27 (1.08530, P>0.1), vir 12 (2.89007, P<0.01), and vir 21 (0.40782, P>0.1) were positive, and that of vir 4 (-1.32162, P>0.1) was negative. All phylogenetic trees showed 2 clades with no particular branching according to the geographical differences and cluster. This study is the first survey on the vir genes in ROK, providing information on the genetic level. The sample sequences from vir 4 showed a clear difference to the Sal-1 reference gene sequence, whereas they were very similar to those from Indian isolates.

The Development of Korean Life Cycle Impact Assessment Index Based on a Damage Oriented Modeling (한국형 피해산정형 전과정 영향평가 지표 개발)

  • Park, Pil-Ju;Kim, Mann-Young
    • Journal of Korean Society of Environmental Engineers
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    • v.32 no.5
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    • pp.499-508
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    • 2010
  • This study proposed a life cycle impact assessment index that can indicate the environment-related information of the product in monetary value such that the national geographical, environmental, and social features are fully reflected based on a damage-oriented model. First, the estimation process was classified into characterization, damage assessment, and integration stages considering the six biggest impact categories: resource depletion, global warming, ozone depletion, acidification, eutrophication, and photochemical oxidant creation. Moreover, this study came up with the 16 category endpoints related to the 6 impact categories, and the damage function, to the 4 largest safeguard subjects. The integration indices of finally identified impact categories were KRW 21.8/kg Sb, KRW 6.19/kg$CO_2$, KRW 53,000/kg CFC-11, KRW 13,100/kg $SO_2$, KRW 2,310/kg ${PO_4}^{3-}$, and KRW 3,030/kg $C_2H_4$. Using the results of this research, environmental impacts based on the environmental load generated throughout the entire life cycle of a product can serve as a single index in monetary value; thus enhancing understanding and utilization of the results of life cycle impact assessments.