• Title/Summary/Keyword: Genotype-environment Interaction

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Interpretation of Genotype × Environment Interaction of Sesame Yield Using GGE Biplot Analysis

  • Shim, Kang-Bo;Shin, Seong-Hyu;Shon, Ji-Young;Kang, Shin-Gu;Yang, Woon-Ho;Heu, Sung-Gi
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.60 no.3
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    • pp.349-354
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    • 2015
  • The AMMI (additive main effects and multiplicative interaction) and GGE (genotype main effect and genotype by environment interaction) biplot which were accounted for a substantial part of total sum of square in the analysis of variance suggested to be more appropriate models for explaining G $\times$ E interaction. The grain yield of total ten sesame genotypes was significantly affected by environment which explained 61% of total variation, whereas genotype and genotype x environment interaction (G $\times$ E) were explained 16%, 24% respectively. From the results of experiment, three genotypes Miryang49, Koppoom and Ansan were unstable, whereas other three genotypes Kyeongbuk18, Miryang50 and Kanghuk which were shorter projections to AEA ordinate were relatively stable over the environments. Yangbak which was closeness to the mean yield and short projection of the genotype marker lines was regarded as genotype indicating good performance with stability. Ansan, Miryang48 and Yangbaek showed the best performance in the environments of Naju, Suwon, Iksan and Andong. Similarly, genotype Miyrang47 exhibited the best performance in the environments of Chuncheon and Miryang. Andong is the closest to the ideal environment, and therefore, is the most desirable among eight environments.

Evaluation of genotype by environment interactions on milk production traits of Holstein cows in southern Brazil

  • Moreira, Raphael Patrick;Pinto, Luis Fernando Batista;Valloto, Altair Antonio;Pedrosa, Victor Breno
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.4
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    • pp.459-466
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    • 2019
  • Objective: This study assessed the possible existence of genotype by environment interactions for milk, fat and protein yields in Holstein cattle raised in one of the most important milk production basins in Brazil. Methods: Changes in the genetic parameters and breeding values were evaluated for 57,967 animals from three distinct regions of southern Brazil, divided according to differences in climate. The genotype by environment interaction was determined by genetic correlations between regions, estimated by the restricted maximum likelihood, considering the animal model. Bull rankings were investigated to verify the ratio of coincident selected animals between regions for each trait. Results: The estimates of heritability coefficients were similar between two regions, but were lower in the third evaluated area, for all traits. Genetic correlations between regions were high, ranging from 0.91 to 0.99 for milk, fat and protein yields, representing the absence of a genotype by environment interaction for productive traits. The percentage of selection error between regions for the top 10% of animals ranged from 0.88% to 2.07% for milk yield, 0.99% to 2.46% for fat yield and 0.59% to 3.15% for protein yield. Conclusion: A slight change in genotype between areas was expected since no significant genotype by environment interactions were identified, facilitating the process of selecting Holstein cattle in southern Brazil.

Heterogeneity of Variance by Sex in Postweaning Gain of Angus Calves under Different Environment Levels

  • Oikawa, T.;Hammond, K.;Tier, B.
    • Asian-Australasian Journal of Animal Sciences
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    • v.12 no.6
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    • pp.846-849
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    • 1999
  • Angus postweaning daily gain (PWDG) were analyzed to investigate heterogeneous variance by sex. A set of data (16,239 records) was divided into six sub-data sets according to level of environment. REML estimation was conducted by a multitrait model, where PWDG in each sex was treated as a separate trait. Estimates showed diversity among environmental levels, where the heritability for heifers was high in good environment but low in poor environment. The bull's estimates varied among environmental levels. The largest heterogeneity of phenotypic variance between sexes was estimated in a data set of the poor environment level. The genetic correlations between the heifer's PWDG and the bull's PWDG were high in the good environment and low in the poor environment (-0.17). The results suggest existence of genotype by sex interaction in the poor environment.

Genotype-Environment Interaction and Stability Analysis for Yield and Yield Contributing Characters in Soybean(Glycine max L.)

  • Islam, Mohammad Saiful;Newaz, Muhammad Ali;Islam, Md. Jahidul;Heo, Seong-Il;Wang, Myeong-Hyeon
    • Korean Journal of Plant Resources
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    • v.20 no.6
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    • pp.504-510
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    • 2007
  • GE interaction is the expression of differential genotypic adaptation across environments. GE interactions through different stability parameters and performance of the traits of genotypes were studied. The traits were days to maturity, pod length, number of pods/ plant, 100-seed weight and seed yield/plant in ten soybean genotypes across five environments. Significant differences were observed for genotypes, environments and GE interactions. Stability analysis after Eberhart and Russell's model suggested that the genotypes used in this study were all more or less responsive to environmental changes. Most of the genotypes perform better in Env.3. Based on phenotypic indices(Pi), regression ($S^2di$) genotype Garurab was found fairly stable for days to maturity. BS-23 and G-2120 may be considered as stable genotype for pod length. All the genotypes except G-2120 showed that the genotypes were relatively unstable under environmental fluctuation for the number of pod/plant. Genotype BS-23 was found most stable among all the genotypes for 100-seed weight. BS-3 and Gaurab was the most stable and desirable genotypes for seed yield in soybean.

Multi-environment Trial Analysis for Yield-related Traits of Early Maturing Korean Rice Cultivars

  • Seung Young Lee;Hyun-Sook Lee;Chang-Min Lee;Su-Kyung Ha;Youngjun Mo;Ji-Ung Jeung
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.252-252
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    • 2022
  • Genotype-by-environment interaction (GEI) refers to the comparative response of genotypes to different environments conditions. Thus, understanding GEI is a fundamental component for selecting superior genotypes for breeding programs. The significance of utilizing early maturing cultivars not only provides flexibility in planting dates, but also serves as an effective strategy to reduce methane emission from the paddy fields. In this study, we conducted multi-environment trials (METs) to evaluate yield-related traits such as culm length, panicle length, panicle number, spikelet per plant, and thousand grain weight. A total of eighty-one Korean commercial rice cultivars categorized as early maturing cultivars, were cultivated in three regions, two planting seasons for two years. The genotype main effect plus genotype-by-environment interaction (GGE) biplot analysis of yield-related traits and grain yield explained 70.02-91.24% of genotype plus GEI variation, and exhibited various patterns of mega-environment delineation, discriminating ability, representativeness, and genotype rankings across the planting seasons and environments. Moreover, simultaneous selection using weighted average of absolute scores from the singular value decomposition (WAASB) and multi-trait stability index (MTSI) revealed six highly recommended genotypes with high stability and crop productivity. The winning genotypes under specific environment can be utilized as useful genetic materials to develop regional specialty cultivars, and recommended genotypes can be used as elite climate-resilient parents to improve yield-potential and reduce methane emission as part to accomplish carbon-neutrality.

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Genotype $\times$ Environment Interaction for Yield in Sesame (Sesamum indicum L.)

  • Shim, Kang-Bo;Kang, Churl-Whan;Hwang, Chung-Dong;Pae, Suk-Bok;Choi, Kyung-Jin;Byun, Jae-Cheon;Park, Keum-Yong
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.53 no.3
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    • pp.297-302
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    • 2008
  • Application of genotype by environment ($G\;{\times}\;E$) interaction would be used for identifying optimum test condition of the varietal adaptation in the establishment of breeding purpose. Yield and yield components were used to perform additive main effect and multiplicative interaction (AMMI) analysis. Significant difference for $G\;{\times}\;E$ interaction were observed for all variable examined. For yield, 0.18 of total sum of squares corresponded to $G\;{\times}\;E$ interaction. Correlation analysis was carried out between genotypic scores of the first interaction principal component axis (IPCA 1) for agronomic characters. Significant correlations were observed between IPCA 1 for yield and capsule bearing stem length (CBSL), number of capsule per plant (NOC). The biplot of grain yield means for IPCA1 which accounted for 34% of the variation in total treatment sums of squares showed different reaction according to $G\;{\times}\;E$ interaction, genotypes and environments. Taegu showed relatively lower positive IPCA1 scores, and it also showed smaller coefficient variation of yield mean where it is recommendable as a optimal site for the sesame cultivar adaptation and evaluation trial. In case of variables, Yangbaek and M1 showed relatively lower IPCA1 scores, but the score direction showed opposite each other on the graph. Ansan, Miryang1, Miryang4, and Miryang6 seemed to be similar group in view of yield response against IPCA1 scores. These results will be helpful to select experimental site for sesame in Korea to minimize $G\;{\times}\;E$ interaction for the selection of promising genotype with higher stability.

Genotype and Environment Effects on Gliadin Content and Polyphenol Oxidase Activity in Wheat

  • Seo, Yong-Weon;Park, Yong-Hack;Hong, Byung-Hee;Park, Moon-Woong;Nam, Jung-Hyun
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.45 no.1
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    • pp.38-43
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    • 2000
  • The environment in which a given genotype is grown may influence its grain quality characteristics. When varieties are $\times$ evaluated over numerous environments, a variety environment interaction usually is observed, but the relative magnitude of environmental(E), genetic(G), and G $\times$ E effects on quality is unclear. In order to determine relative contribution of genotype, environment, and G $\times$ E interaction to the variations observed in grain quality characteristics, 18 Korean wheat cultivars and experimental lines were evaluated in two environments in 1998 and 1999. Correlation coefficients between grain quality and agronomic characteristics were also estimated. The analysis of variance for the optical density obtained by reaction bet- ween gliadin and anti-gliadin polyclonal antibody (AGPab) indicated that gliadin content measured by Enzyme-Linked Immunosorbent Assay(ELISA) was significantly in- fluenced by environment and cultivar differences. The significant differences of year and year $\times$ location were also found. The ratio of the variances associated with environmental effects to the variances associated with genetic effect gave relatively greater influence of environmental factor on gliadin content. The different protein content from same genotype grown in different environment might be associated with degree of storage protein accumulations. Significant relationships between ELISA and protein content, yield, ten spike weight, and ten spike number were detected. Polyphenol oxidase (PPO) activity was significantly influenced by year, location, cultivar and year $\times$ location. The variance in grain PPO activities among growing years appeared larger than the variation produced by the cultivar examined. This suggested that the growing environment contributed more to variability in grain PPO concentration.

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The Genetic Development of Sire, Dam and Progenies and Genotype ${\times}$ Environment Interaction in a Beef Breeding System

  • Bhuiyan, A.K.F.H.;Dietl, G.;Klautschek, G.
    • Asian-Australasian Journal of Animal Sciences
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    • v.17 no.1
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    • pp.13-17
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    • 2004
  • The aim of this study was to investigate genetic development and genotype${\times}$environment interactions (GEI) in postweaning body weight of fattening bulls at the end of test period (WT-T) under various beef fattening environments. Data on a total of 24,247 fattening bulls obtained from the industrial farm, breeding farms and testing stations were used. Heritability estimates for WT-T in all environments were nearly similar. Significant genetic developments of sire, dam and progenies for WT-T were observed in all environments. However, many differences in annual genetic developments between the environments were significant. The genetic correlations for WT-T between industrial farm and breeding farms, industrial farm and testing stations and breeding farms and testing stations were respectively 0.004, 0.004 and 0.013. These low estimates of genetic correlations and significant differences in genetic developments among environments clearly show the existence of GEI for WT-T among various fattening environments. Results of this study indicate the need for environment-specific genetic evaluation and selection of beef bulls for commercial beef production.

Evaluation of Iron and Zinc Content in Rice Germplasms

  • Lee, Jeom-Ho;Lee, Kyu-Seong;Hwang, Hung-Goo;Yang, Chang-Ihn;Lee, Sang-Bok;Choi, Young-Hwan;Jeong, O-Young;Virk, Parminder
    • Korean Journal of Breeding Science
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    • v.40 no.2
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    • pp.101-105
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    • 2008
  • The germplasm of 246 rice cultivars was analysed for iron and zinc contents using a Inductively Coupled Argon Plasma (ICP) at International Rice Research Institute (IRRI) Philippines. Iron contents ranged from 2.0 to 12.0, and zinc ranged from 10.0 to 33.0 (mg/kg), showing with the mean values of 4.3 and 22.8 (mg/kg), respectively. In genotypes tested, there was approximately a two-fold difference in iron and zinc concentrations, suggesting a genetic potential to increase these micronutrients in rice grain. A highly significant positive correlation ($r^2=0.503$) was found between iron and zinc contents. Iron contents decreased drastically as polishing time increased, whereas zinc decreased only slightly. In the interaction between genotype and environment on iron contents, genotype (G), environment (E), and the G ${\times}$ E interactions accounted for 69%, 5% and 26% of the sums of squares, respectively. Indicating that genotype is would be the most significant factor for the to improve iron contents of rice in rice breeding, suggesting that therefore identifying genotypes with relatively stable performance across various environments is important as staple food crops.

Multi-locations and stability evaluation on growth character of the permata hybrid carp

  • Didik Ariyanto;Suharyanto Suharyanto;Flandrianto S. Palimirmo;Yogi Himawan;Listio Darmawantho;Fajar Anggraeni
    • Fisheries and Aquatic Sciences
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    • v.27 no.5
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    • pp.265-275
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    • 2024
  • The success of establishing the Indonesian growing fast hybrid carp, namely "Permata", on a controlled environmental test must be followed up with a large-scale test. This study aims to evaluate the phenotypic performance of the Permata hybrid carp in multi-locations with different cultivation systems. The test sites consisted of floating net cages, running-water ponds, semi-concrete ponds, earthen ponds, fully concrete ponds, and static net cages. For 90 days, fish were fed commercial pellets with a 28%-30% protein content. At the end of the test, all fish were harvested and counted. Data on length, weight, survival rate, and harvested biomass were used to analyze the effect of genotype, environment, and their interaction on the phenotypic performance. The growth based on final weight is used to analyze the stability performance in each test location. The results showed that the length and weight of common carp were significantly affected by genotype and the environment, but not by the interaction of both. The genotype, environment, and the interaction of both factors affected common carp's survival and harvested biomass. Common carp reared in floating net cages generally had the best performance, while carp reared in fully concrete tanks and static net cages had the lowest. The growth stability analysis showed that the common carp in this study were unstable genotypes but have a broad adaptability in term of different environments.