• Asian Pacific Journal of Cancer Prevention
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• 제15권1호
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• pp.85-91
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• 2014

Background: Genome-wide association studies (GWAS) have identified various genetic susceptibility loci for breast cancer based mainly on European-ancestry populations. Differing linkage disequilibrium patterns exist between European and Asian populations. Methods: Ten SNPs (rs2075555 in COL1A1, rs12652447 in FBXL17, rs10941679 in 5p12/MRPS30, rs11878583 in ZNF577, rs7166081 in SMAD3, rs16917302 in ZNF365, rs311499 in 20q13.3, rs1045485 in CASP8, rs12964873 in CDH1 and rs8170 in 19p13.1) were here genotyped in 1009 Chinese females (487 patients with breast cancer and 522 control subjects) using the Sequenom MassARRAY iPLEX platform. Association analysis based on unconditional logistic regression was carried out to determine the odds ratio (OR) and 95% confidence interval (95% CI) for each SNP. Stratification analyses were carried out based on the estrogen receptor (ER) and progesterone receptor (PR) status. Results: Among the 10 SNPs, rs10941679 showed significant association with breast cancer when differences between the case and control groups in this Han Chinese population were compared (30.09% GG, 45.4% GA and 23.7% AA; P = 0.012). Four SNPs (rs311499, rs1045485, rs12964873 and rs8170) showed no polymorphisms in our study. The remaining five SNPs showed no association with breast cancer in the present population. Immunohistochemical tests showed that rs2075555 was associated with ER status; the AA genotype showed greater association with ER negative than ER positive (OR = 0.54, 95% CI, 0.29-0.99; P = 0.046). AA of rs7166081 was also associated with ER status, but showed a greater association with ER positive than negative (OR = 1.59, 95% CI = 1.04-2.44; P = 0.031). However, no significant associations were found among the SNPs and PR status. Conclusion: In this study using a Han Chinese population, rs10941679 was the only SNP associated with breast cancer risk, indicating a difference between European and Chinese populations in susceptibility loci. Therefore, confirmation studies are necessary before utilization of these loci in Chinese.

• Asian Pacific Journal of Cancer Prevention
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• 제15권6호
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• pp.2747-2751
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• 2014

Background: DNA repair pathways play a crucial role in maintaining the human genome. Previous studies associated DNA repair gene polymorphisms (XPD Lys751Gln, XRCC1 Arg280His and XRCC1 Arg399Gln) with nasopharyngeal carcinoma. These non-synonymous polymorphisms may alter DNA repair capacity and thus increase or decrease susceptibility. The present study aimed to determine the genotype distribution of XPD codon 751, XRCC1 codon 280 and codon 399 polymorphisms and haplotype associations among NPC cases and controls in the Malaysian population. Materials and Methods: We selected 157 NPC cases and 136 controls from two hospitals in Kuala Lumpur, Malaysia for this study. The polymorphisms studied were genotyped by PCR-RFLP assay and allele and genotype frequenci es, haplotype and linkage disequilibrium were determined using SNPstat software. Results: For the XPD Lys751Gln polymorphism, the frequency of the Lys allele was higher in cases than in controls (94.5% versus 85.0%). For the XRCC1 Arg280His polymorphism, the frequency of Arg allele was 90.0% and 89.0% in cases and controls, respectively and for XRCC1 Arg399Gln the frequency of the Arg allele was 72.0% and 72.8% in cases and controls respectively. All three polymorphisms were in linkage disequilibrium. The odds ratio from haplotype analysis for these three polymorphisms and their association with NPC was 1.93 (95%CI: 0.90-4.16) for haplotype CGC vs AGC allele combinations. The global haplotypte association with NPC gave a p-value of 0.054. Conclusions: Our study provides an estimate of allele and genotype frequencies of XRCC1Arg280His, XRCC1 Arg399Gln and XPD Lys751Gln polymorphisms in the Malaysian population and showed no association with nasopharyngeal cancer.

• 대한환경공학회지
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• 제34권12호
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• pp.855-862
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• 2012

Free-living 선충으로 알려진 Caenorhabditis elegans는 주로 토양 공극수에서 서식하며, 토양 영양단계, 에너지 흐름, 그리고 분해자로서 중요한 역할을 하는 것으로 알려져 있다. 최근 들어, C. elegans는 나노독성연구에 널리 사용되고 있는 추세이다. 본 연구에서는 C. elegans를 이용한 나노독성과 그에 대한 기작에 관련된 선행연구를 조사하였으며, 총 20건의 연구를 확인하였다. 대부분의 연구는 K-medium, S-medium, 그리고 NGM (Nematode Growth Medium) plate를 노출매체로 이용하고 있으며, 나노물질에 노출된 C. elegans로부터 관찰된 영향으로는 노화억제, 광독성영향, 유전독성, 그리고 표피자극 등이 포함되었다. C. elegans를 이용한 독성기작 연구는 개체 생활사 영향 평가, 산화스트레스 영향 평가, 유전독성영향 평가, 나노물질의 생체 내 분포, 그리고 나노물질 특성에 의한 독성영향 평가로 분류할 수 있다. 본 연구에서는 다양한 세포활성, 잘 알려진 유전정보, 그리고 투명한 구조로 인한 나노물질 관찰의 용이성을 바탕으로, C. elegans를 이용한 나노독성연구의 장점을 확인하였다. C. elegans는 나노독성을 평가하기에 적합한 시험종으로 고려되고 있다.

• 한국균학회지
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• 제17권3호
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• pp.119-123
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• 1989

주름버섯목(目) 느타리버섯과 민주름버섯목(目) 잔나비걸상버섯과의 이목간(異目間) 원형질체(原形質體)를 polyethylene glycol로 유도하여 융합주(融合株) heterokaryon을 선발하였다. 버섯최소배지에서 극히 균사생장이 느렸으며 버섯완전배지에서 3번 계대배양되면서 다소 생장이 빨라졌다. 융합주 36균주의 75%는 양친의 균사가 혼합된 균총형태였으며 16.7%는 새로운 형태, 8.3%는 느타리버섯 형태이었다. 이들 중 양친의 균총(菌叢)이 혼합된 형태는 3번 계대배양 후 모두 느타리버섯 형태로 변하였다. 균사(菌絲)에는 클램프연결체가 없었고 원기(原基)도 형성하지 않았다. 융합주(融合株)를 전기영동법으로 esterase, malate dehydrogenase, peroxidase의 동위효소(同位酵素) 분석(分析)으로 비교하였는데 잔나비걸상버섯 효소는 뚜렷하지 않았으나 새로운 밴드의 형성으로 보아 두 양친 genome간의 상호작용이 존재하였다.

• 한국자원식물학회:학술대회논문집
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• 한국자원식물학회 2018년도 추계학술대회
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• pp.73-73
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• 2018

Bacterial leaf blight(BLB), caused by X. oryzae pv. oryzae(Xoo), is one of the most destructive diseases of rice due to its high epidemic potential. Understanding BLB resistance at a genetic level is important to further improve the rice breeding that provides one of the best approaches to control BLB disease. In the present investigation, a collection of 192 accessions was used in the genome-wide association study (GWAS) for BLB resistance loci against four Korean races of Xoo that were represented by the prevailing BLB isolates under Xoo differential system. A total of 192 accessions of rice germplasm were selected on the basis of the bioassay using four isolated races of Xoo such as K1, K2, K3 and K3a. The selected accessions was used to prepare 384-plex genotyping by sequencing (GBS) libraries and Illumina HiSeq 2000 paired- end read was used for GBS sequencing. GWAS was conducted using T ASSEL 5.0. The T ASSEL program uses a mixed linear model (MLM). T he results of the bioassay using a selected set of 192 accessions showed that a large number of accessions (93.75%) were resistant to K1 race, while the least number of accessions (34.37%) resisted K3a race. For races K2 and K3, the resistant germplasm proportion remained between 66.67 to 70.83%. T he genotypic data produced SNP matrix for a total of 293,379 SNPs. After imputation the missing data was removed, which exhibited 34,724 SNPs for association analysis. GWAS results showed strong signals of association at a threshold of [-log10(P-value)] more than5 (K1 and K2) and more than4 (K3 and K3a) for nine of the 39 SNPs, which are plausible candidate loci of resistance genes. T hese SNP loci were positioned on rice chromosome 2, 9, and 11 for K1 and K2 races, whereas on chromosome 4, 6, 11, and 12 for K3 and K3a races. The significant loci detected have also been illustrated, NBS-LRR type disease resistance protein, SNARE domain containing protein, Histone deacetylase 19, NADP-dependent oxidoreductase, and other expressed and unknown proteins. Our results provide a better understanding of the distribution of genetic variation of BLB resistance to Korean pathogen races and breeding of resistant rice.

• Journal of the Korean Association of Oral and Maxillofacial Surgeons
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• 제26권6호
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• pp.581-590
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• 2000

Alterations in the cellular genome affecting the expression or function of genes controlling cell growth and differentiation are considered to be the main cause of cancer. Over 30 oncogenes can be activated by insertional mutagenesis, single point mutations, chromosomal translocations and gene amplification. The ras oncogenes have been detected in $15{\sim}20%$ of human tumors that include some of the most common forms of human neoplasia and are known to acquire their transforming properties by single point mutations in two domains of their coding sequences, most commonly in codons 12 and 61. The ras gene family consists of three functional genes, N-ras, K-ras and H-ras which encode highly similar proteins of 188 or 189 amino acid residues generically known as P21. ras proteins have been shown to bind GTP and GTP, and possess intrinsic GTPase activity. Experimental study was performed to observe the mutational change of the ras gene family and apply the results to the clinical activity. 36 Golden Syrian Hamster each weighing $60{\sim}80g$ were used and painted with 0.5% DMBA by 3 times weekly on the right buccal cheek(experimental side) for 6, 8, 10, 12, 14 and 16 weeks. Left buccal cheek (control side) was treated with mineral oil as the same manner of the right side. The hamsters were sacrificed on the 6, 8, 10, 12, 14 & 16 weeks. Normal and tumor tissues from paraffin block were completely dissected by microdissection and DNA from both tissue were isolated by proteinase K/phenol/chloroform extraction. Segments of the K-ras and H-ras gene were amplified by PCR using the oligonucleotide primers corresponding to the homologous region (codon 12 and 61) of the hamster gene, and then confirmational change of ras genes was observed by SSCP and autosequencing analysis. The results were as follows : 1. Malignant lesion could be found in the experimental side from the experimental six weeks. 2. One hamster among six showed point mutation of the H-ras codon 12($G{\rightarrow}A$ transition) at the experimental 10 and 14 weeks. 3. One of six at 6 weeks, two of six at 8 weeks and one of six at 12 weeks revealed the confirmational change of the H-ras codon 61($A{\rightarrow}T$ transversion). 4. The incidence of point mutation of H-ras codon 12 and 61 were 5.5%(2 of 36) and 11%(4 of 36) respectively. 5. Point mutation of the K-ras could not be seen during the whole experimental period. Form the above results, these findings strongly support the concept that H-ras oncogenes may have the influence of the DMBA induced carcinoma of hamster buccal pouch.

• 한국환경생태학회지
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• 제24권3호
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• pp.318-324
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• 2010

이 연구의 목적은 고라니(Hydropotes inermis argyropus)의 위내용물을 대상으로 PCR-DGGE 방법을 이용하여 그 식이습성을 조사하는데 있다. 이 연구를 위해, 강원도 철원과 전라남도 동부지역 등에서 자연사 혹은 로드킬에 의해 죽은 고라니 사체의 위에서 식이물 샘플을 채취하였다. 총 44개체의 위내용물에서 각각 DNA를 추출하였고, 두 가지의 프라이머(rbcLZ1과 rbcL19bR)를 이용하여 ribulose-1,5-bisphosphate carboxylase large subunit(rbcL) gene을 PCR 증폭하였다. 44개의 샘플 중 29 샘플에서 성공적으로 PCR을 수행하였다. 이 29개 partial rbcL gene의 PCR product는 PCR-DGGE에 이용되었다. 식이물에 대한 분석결과 총 6과의 식물이 확인되었다. 강원도 철원의 경우, 5과가 나타난 반면, 전라남도 동부의 경우, 3과만이 확인되었다. 이 연구에서는 종수준의 먹이식물의 구별에는 실패하였 지만, 차후 이 PCR-DGGE 기법은 고라니를 포함한 초식동물의 식이습성을 분석하는데 하나의 가능성 있는 방법이 될 것으로 생각된다.

• 한국응용곤충학회지
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• 제45권1호
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• pp.15-24
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• 2006

프루텔고치벌(Cotesia plutellae)은 내부기생봉이고 kB억제자 (IkB)와 유사한 유전자가 이 기생봉의 절대 공생바이러스(C. plutellae bracovirus: CpBV) 게놈에서 발견되었다. 이 유전자의 발현 부위는 417 br의 크기이며 138개 아미노산 서열 정보를 포함하였다. 이 단백질은 4개의 ankyrin 반복영역을 지니고 있었으며, 알려진 다른 폴리드나바이러스 유래 IkB 유전자와 높은 상동성을 보였다. 초파리 Cactus 단백질을 통해 대상 기주 IkB와 비교하여 보면, IkB 신호수신영역이 부재하는 구조를 보여, CpBV-IkB는 NFkB 신호전달체계의 비가역적 억제 인자로 작용할 것으로 추정되었다. CpBV-IkB는 프루텔고치 벌에 기생된 배추좀나방에서만 발현되었다. 정량적 RT-PCR 방법으로 CpBV-IkB의 발현량을 조사하여 보면, 기생 첫날부터 발현을 보이기 시작하여 뚜렷한 발현량을 기생 전체 기간동안 유지하는 양상을 보였다. 이 CpBV-IkB의 기능 분석이 간접적으로 이뤄졌으며, 이 유전자 발현물이 대상 기주 항바이러스 억제 인자로 작용할 것이라는 가설을 제시하였다.

• 한국산림과학회지
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• 제102권3호
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• pp.331-337
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• 2013

Formate dehydrogenase(FDH)는 포름산이온을 이산화탄소로 산화하는 반응을 촉매하는 효소로서, 건조와 저온 그리고 병원균 감염 등에 반응하는 스트레스 단백질로 알려져 있다. 본 연구에서는 현사시나무에서 FDH의 cDNA를 분리하여 구조와 발현 특성 등을 조사하였다. 현사시나무의 FDH cDNA(PagFDH1)는 1,499개의 염기쌍으로 이루어져 있으며, 388개의 아미노산으로 구성되는 예상 분자량 42.5 kDa의 단백질을 암호화한다. PagFDH1 단백질은 미토콘드리아 신호펩티드와 $NAD^+$ 결합부위를 가지고 있다. PagFDH1은 현사시나무의 염색체에 1 copy가 존재하며, 배양세포에서 가장 높게 발현되고 뿌리와 꽃 그리고 잎에서도 발현되었다. 현탁배양세포의 생장주기에서 유도기와 초기 지수생장기에 높게 발현하였다. PagFDH1은 건조와 염 스트레스에 반응하여 ABA를 경유한 신호전달경로에 의해 발현이 유도되는 것으로 나타났다. 본 연구결과는 FDH 유전자의 도입과 발현조절을 통한 환경 스트레스 저항성나무의 개발에 도움을 줄 것으로 생각된다.

• Genomics & Informatics
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• 제15권3호
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• pp.87-97
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• 2017

Multiple myeloma (MM) is a malignant disease caused by an abnormal proliferation of plasma cells, of which the prognostic factors include chromosomal abnormality, ${\beta}$-2 microglobulin, and albumin. Recently, the term chromothripsis has emerged, which is the massive but highly localized chromosomal rearrangement in response to a one-step catastrophic event. Many studies have shown an association of chromothripsis with the prognosis in several cancers; however, few studies have investigated it in MM. Here, we studied the association between chromothripsis-like patterns and treatment resistance or prognosis. First, we analyzed nine MM cell lines (U266, MM.1S, RPMI8226, KMS-11, KMS-12-BM, KMS-12-PE, KMS-28-BM, KMS-28-PE, and NCI-H929) and bone marrow samples of four patients who were diagnosed with MM by next-generation sequencing-based copy number variation analysis. The frequency of the chromothripsis-like pattern was observed in seven cell lines. We analyzed the treatment-induced chromothripsis-like patterns in KMS-12-BM and KMS-12-PE cells. As a result, breakpoints and chromothripsis-like patterns were increased after drug treatment in the relatively resistant KMS-12-BM. We further analyzed the patients' results according to the therapeutic response, which was divided into sensitive and resistant, as suggested by the International Myeloma Working Group. The chromothripsis-like pattern was more frequently observed in the resistant group. In the sensitive group, the frequency of the chromothripsis-like pattern decreased after treatment, whereas the resistant group showed increased chromothripsis-like patterns after the treatment. These results suggest that the chromothripsis-like pattern is associated with treatment response in MM.