• Archives of Pharmacal Research
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• 제23권4호
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• pp.344-348
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• 2000

80% Aqueous MeOH extracts from the wood of Caesalpinia sappan, which showed remarkable anticonvulsant activity, were fractionated using EtOAc, n-BuOH, and $H_2$O. Among them, the EtOAc fraction significantly inhibited the activities of two GABA degradative enzymes, succinic semialdehyde dehydrogenase (SSADH) and succinic semialdehyde reductase (SSAR). Repeated column chromatographies for the fraction guided by activity test led to the isolation of the two active principal components. Their chemical structures were determined to be sappanchalcone and brazilin based on spectral data. The pure compounds, sappanchalcone (1) and brazilin (2), inactivated the SSAR activities in a dose dependent manner, whereas SSADH was inhibited partially by sappanchalcone and not by brazilin.

• 대한전기학회:학술대회논문집
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• 대한전기학회 2006년도 추계학술대회 논문집 전기물성,응용부문
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• pp.145-146
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• 2006

본 논문은 부분방전(PD: Partial Discharge)의 패턴인식 확률 극대화를 목적으로 신경망(NN: Neural Network) 파라미터 중에서 은닉층 뉴런의 수, 모멘텀(momentum)의 Step size와 Decay rate 를 최적화하기 위하여 유전 알고리즘(GA: Genetic Algonthm)을 적응하였다. 실험적 연구의 대상으로서, GIS(Gas Insulated Switchgear)사고의 주요 원인으로 보고되어있는 결함들을 인위적으로 모의한 16개 Test cell을 이용하여 부분방전을 발생시켰다. 부분방전 신호는 본 연구팀이 개발한 센서를 이용하여 검출되어 데이터베이스가 구축되어 그로부터 추출된 학습 데이터들의 학습에 다음과 같은 5가지 신경망 모델이 적응되었다: Multilayer Perception (MLP), Jordan-Elman Network (JEN), Recurrent Network (RN), Self-Organizing Feature Map (SOFM), Time-Lag Recurrent Network (TLRN). 유전 알고리즘 적용 효율성을 분석하기 위하여 동일한 데이터를 이용하여 다음과 같은 두 가지 방법을 적용한 결과를 상호 비교하였다. 우선 상기 선택된 모델만 적용하였고 다근 하나는 상기 모델과 Genetic Algorithm이 동시에 적용되었다. 모든 모델에 대하여 학습오차와 패턴 분류 확률을 비교한 결과, 유전 알고리즘 적응 시 부분방전 패턴인식 확률이 향상되었음이 확인되어 향후 신뢰성 있는 GIS 부분방전 진단기술에 활용될 수 있을 것으로 사료된다.

• 한국자원식물학회지
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• 제25권3호
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• pp.308-316
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• 2012

The purpose of this study was to identify the variant of Platanus occidentalis, whose bark looks white, also can be classified as P. occidentalis and to examine its genetic difference from the general P. occidentalis. For the variant identification of P. occidentalis, SNP and ISSR analysis were used in this study. Thirteen samples of P. occidentalis white variant were collected in Cheongju and 24 samples of normal P. occidentalis obtained in Cheongju, Pyongtaek, Ansan, Suwon, Osan and Jincheon area. ITS 1 and ITS 2 sequences of white variants were identical with those of P. occidentalis. We could not find any sequence difference between normal and white P. occidentalis. So we concluded that the white variant belongs to normal P. occidentalis even their bark is white and peeled easily. By ISSR test, 98 amplicons were acquired using 10 primers. P. occidentalis and white P. occidentalis showed different band patterns from the UBC #834. According to the result of Nei (1979)'s genetic distance analysis, the members of white P. occidentalis were grouped more tightly than the members of normal P. occidentalis. The UPGMA dendrogram shows that the variant and P. occidentalis divided widely into two groups. These results show that the phenotype of P. occidentalis white variant is caused by genetic factors rather than by environmental factors.

• 한국육종학회지
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• 제40권3호
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• pp.228-233
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• 2008

This study was carried out to get the genetic information on the germination rate and fat acidity after 12 weeks' storage at $35^{\circ}C$. Germination rate decreased with longer storage period, while fat acidity increased. Germination rate was higher in the order of Koshihikari, Hanmaeum and Unkwangbyeo after 12 weeks' storage at $35^{\circ}C$. Fat acidity of Koshihikari and Hanmaeum was gradually increased, but that of Unkwangbyeo was dramatically increased after 4 weeks' storage at $35^{\circ}C$. The genetic mode on germination rate and fat acidity using the joint scaling test was shown to be additive-dominance gene effects. Additive([d]) effect was higher than dominance effect([h]) in all crosses. The average degree of dominance, [h]/[d], was less than 1, indicating that germination rate and fat acidity was partially dominant. Germination rate and fat acidity based on frequency distribution of 2 crosses were quantitative characters expressed by polygenes.

• 한국추진공학회:학술대회논문집
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• 한국추진공학회 2004년도 제23회 추계학술대회 논문집
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• pp.195-200
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• 2004

본 연구에서는 실험데이터와 유전자 알고리즘으로 압축기 성능선도를 생성하는 방법을 제안하였다. 다수의 실험을 통해 엔진의 성능 데이터를 획득하고 회전수에 따른 유량함수, 압력비, 효율의 함수관계를 3차 방정식으로 유도한 후 유전자 알고리즘을 이용하여 미계수를 구하여 압축기 성능선도를 생성하였다. 새롭게 생성한 압축기 성능선도를 이용하여 상용 성능해석 프로그램인 GASTURB로 정상상태 성능해석을 수행하여 검증데이터와 비교하였다.

• Animal cells and systems
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• 제14권3호
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• pp.197-206
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• 2010

The population structure of brown sole was examined in a total of 308 samples collected from three geographical groups: one locality (Gangneung) on the east side of the Korean Peninsula, two localities (Erimo and Tomakomai) on the southeastern side and four localities (Onishika, Teshio, Tomamae and Yoichi) on the northwestern side of Hokkaido Island, Japan, by using sequences of 484 bp from the 5' end of the control region of mtDNA. We detected 225 haplotypes, but 183 of them were unique to an individual. A total of 116 nucleotide sites were variable. Haplotype diversity (h) was very high, ranging from 0.989 to 1.000, and nucleotide diversity (${\pi}$) was detected between 0.015 and 0.022. Genetic distances (${\Phi}_{ST}$) within populations, among populations and among geographical groups were low (0.0002 to 0.0014). No significant difference was detected by the AMOVA test (P < 0.05). Pairwise $F_{ST}$ values between sampling localities were also low and not significant. Genetic differentiation was not detected among sampling localities.

• Parasites, Hosts and Diseases
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• 제60권6호
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• pp.393-400
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• 2022

Human infection with simian malaria Plasmodium knowlesi is a cause for concern in Southeast Asian countries, especially in Malaysia. A previous study on Peninsular Malaysia P. knowlesi rhoptry associated protein-1 (PkRAP1) gene has discovered the existence of dimorphism. In this study, genetic analysis of PkRAP1 in a larger number of P. knowlesi samples from Malaysian Borneo was conducted. The PkRAP1 of these P. knowlesi isolates was PCR-amplified and sequenced. The newly obtained PkRAP1 gene sequences (n=34) were combined with those from the previous study (n=26) and analysed for polymorphism and natural selection. Sequence analysis revealed a higher genetic diversity of PkRAP1 compared to the previous study. Exon II of the gene had higher diversity (π=0.0172) than exon I (π=0.0128). The diversity of the total coding region (π=0.0167) was much higher than those of RAP1 orthologues such as PfRAP-1 (π=0.0041) and PvRAP1 (π=0.00088). Z-test results indicated that the gene was under purifying selection. Phylogenetic tree and haplotype network showed distinct clustering of Peninsular Malaysia and Malaysian Borneo PkRAP1 haplotypes. This geographical-based clustering of PkRAP1 haplotypes provides further evidence of the dimorphism of the gene and possible existence of 2 distinct P. knowlesi lineages in Malaysia.

• 한국농림기상학회지
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• 제15권3호
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• pp.191-200
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• 2013

본 연구는 느티나무 산지의 개엽 시기에 영향을 미치는 기후인자를 구명하기 위해 수행되었다. 이를 위해 2009년 국립산림과학원에서 조성한 강릉, 임실, 화성, 진주의 4개 산지시험림을 대상으로 개엽 시기를 조사하였다. 개엽시기 조사는 4~5월에 걸쳐 이루어졌으며 휴면 중이던 동아가 부풀어 오르면서 초록색이 처음 보이는 때를 개엽 개시일로 하였으며, 동아에서 잎이 나와 완전히 신장하여 펴진 시점을 개엽 완료일로 하였다. 분산분석을 실시한 결과, 개엽 개시일과 개엽 완료일 모두 조림지 간, 산지 간 그리고 조림지와 산지 간 상호작용에서 통계적으로 유의한 차이가 인정되었다. 개엽 시기에 영향을 미치는 조림지의 기후인자를 구명하기 위해 상관분석을 실시한 결과, 3~10월의 평균기온 또는 최고기온이 높고, 3~10월 또는 6~10월의 평균습도가 낮은 조림지에서 개엽이 빨리 이루어지는 것으로 나타났다. 조림지와 산지 간 기후인자의 차이가 개엽 시기에 미치는 영향을 구명하고자 기후인자에 대한 생태적 거리(=조림지-산지)를 구하여 공준상관 분석을 실시한 결과, 3~10월 최고기온, 연평균 최고기온, 3~10월 평균기온, 7~8월 최고기온, 6~10월 평균습도의 차이가 주요 인자로 나타났다. 결론적으로 느티나무는 조림지 보다 생육기의 평균 기온이 낮은 곳에서 온 산지가 개엽이 빨리 시작되는 경향으로 전형적인 북-남 또는 저온-고온 경사변이를 나타내느티나무 산지에 따른 지리적 변이가 존재함을 확인할 수 있었다. 마지막으로 이러한 연구결과를 느티나무 육종에 활용하기 위한 방안에 대해 고찰하였다.

• Genomics & Informatics
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• 제10권2호
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• pp.117-122
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• 2012

A sample size with sufficient statistical power is critical to the success of genetic association studies to detect causal genes of human complex diseases. Genome-wide association studies require much larger sample sizes to achieve an adequate statistical power. We estimated the statistical power with increasing numbers of markers analyzed and compared the sample sizes that were required in case-control studies and case-parent studies. We computed the effective sample size and statistical power using Genetic Power Calculator. An analysis using a larger number of markers requires a larger sample size. Testing a single-nucleotide polymorphism (SNP) marker requires 248 cases, while testing 500,000 SNPs and 1 million markers requires 1,206 cases and 1,255 cases, respectively, under the assumption of an odds ratio of 2, 5% disease prevalence, 5% minor allele frequency, complete linkage disequilibrium (LD), 1:1 case/control ratio, and a 5% error rate in an allelic test. Under a dominant model, a smaller sample size is required to achieve 80% power than other genetic models. We found that a much lower sample size was required with a strong effect size, common SNP, and increased LD. In addition, studying a common disease in a case-control study of a 1:4 case-control ratio is one way to achieve higher statistical power. We also found that case-parent studies require more samples than case-control studies. Although we have not covered all plausible cases in study design, the estimates of sample size and statistical power computed under various assumptions in this study may be useful to determine the sample size in designing a population-based genetic association study.

• Journal of Crop Science and Biotechnology
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• 제11권2호
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• pp.83-90
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• 2008

Two hundred and sixty Korean soybean landrace accessions were analyzed for polymorphism at 92 simple sequence repeat(SSR) loci. The 995 identified alleles served as raw data for estimating genetic diversity and population structure. The number of alleles at a locus ranged from three to 27 with a mean of 10.4 alleles per locus. $F_{ST}$ values estimated by analysis of molecular variance(AMOVA) using SSR data set were 0.018, 0.027, and 0.016 for usage, collection site and maturity groups, respectively, indicating little genetic differentiation. The model-based clustering analysis placed the accessions into three clusters(K=3) with 0.0503 of $F_{ST}$, indicating moderate genetic differentiation. Duncan's Multiple Range Test at K = 3 on the basis of 18 quantitative traits revealed that one cluster was mainly differentiated from the other two clusters by seed related traits and the other two clusters were differentiated from each other by biochemical traits. Genetic structure of Korean soybean landraces was differentiated by model-based clustering and supported by their phenotypic traits in part. This preliminary study could be the first step towards more efficient germplasm management and utilization of soybean landraces and helpful in association studies between genotypic and phenotypic traits in Korean soybean landraces.