• Title/Summary/Keyword: Genetic Distances

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Methodology for Optimizing Permittivity Distribution of 145 kV Miniaturized Functional Graded Spacer Using Non-Dominated Sorting Genetic Algorithm-II (비지배 정렬 유전 알고리즘-II를 이용한 145 kV급 축소형 경사기능성 적용 스페이서의 유전율 분포 최적화 방법론)

  • Noh, Yo-Han;Kim, Seung-Hyun;Cheong, Jong-Hun;Cho, Han-Goo
    • Journal of the Korean Institute of Electrical and Electronic Material Engineers
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    • v.33 no.3
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    • pp.225-230
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    • 2020
  • Recently, with the miniaturization of GIS, there is a need for the miniaturization of spacers as accessories. Miniaturized spacers make it difficult to secure adequate insulation distances, resulting in a more concentrated electric field at the triple junction of high-voltage (HV) conductor-insulator (spacer)-insulation gas (SF6), which is a weakness in GIS. Therefore, by introducing a new concept design technology, functionally graded material (FGM), which is recently applied to various materials and parts industries, three-dimensional control of the dielectric constant distribution in a spacer can be expected to alleviate triple-junction electric field occupancy and improve insulation performance. In this study, we propose an optimized model using NSGA-II to optimize the permittivity distribution of FGM applied spacer.

Anaplasma marginale and A. platys Characterized from Dairy and Indigenous Cattle and Dogs in Northern Vietnam

  • Chien, Nguyen Thi Hong;Nguyen, Thi Lan;Bui, Khanh Linh;Van Nguyen, Tho;Le, Thanh Hoa
    • Parasites, Hosts and Diseases
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    • v.57 no.1
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    • pp.43-47
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    • 2019
  • Anaplasma marginale and A. platys were detected and characterized (16S rDNA sequence analysis) from dairy and indigenous cattle, and the latter in domestic dogs in Vietnam. A phylogenetic tree was inferred from 26 representative strains/species of Anaplasma spp. including 10 new sequences from Vietnam. Seven of our Vietnamese sequences fell into the clade of A. marginale and 3 into A. platys, with strong nodal support of 99 and 90%, respectively. Low genetic distances (0.2-0.4%) within each species supported the identification. Anaplasma platys is able to infect humans. Our discovery of this species in cattle and domestic dogs raises considerable concern about zoonotic transmission in Vietnam. Further systematic investigations are needed to gain data for Anaplasma spp. and members of Anaplasmataceae in animal hosts, vectors and humans across Vietnam.

DNA Barcoding of Benthic Ragworms of the Genus Nectoneanthes (Polychaeta: Nereididae) Collected in Korean Waters

  • Park, Taeseo
    • Animal Systematics, Evolution and Diversity
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    • v.37 no.3
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    • pp.235-241
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    • 2021
  • To provide better taxonomic information of the genus Nectoneanthes, the two DNA barcode regions of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA (rDNA) sequences of Nectoneanthes oxypoda and N. uchiwa were determined. In addition, the respective sequences of four nereidid species closely related to Nectoneanthes were retrieved from GenBank for comparison and to estimate intra- and inter-specific genetic distances. The aligned sequence lengths of COI and 16S rDNA were 570 bp and 419 bp long, respectively. The mean intraspecific variation in both markers was less than 1% in all species except for that in COI of H. diadroma (1.87%). The mean interspecific variation between N. oxypoda and N. uchiwa was 12.02% regarding COI and 1.85% regarding 16S rDNA. In contrast, the mean interspecific variation between species of other genera was comparably higher(i.e., genus Perinereis: 20.5% in COI and 8.3% in 16S rDNA; genus Hediste: 13.18% in COI and 2.64% in 16S rDNA), compared with that between the two Nectoneanthes species. This result indicated that these Nectoneanthes species are genetically more closely related than other congeneric species of different genera. The DNA barcoding information on Nectoneanthes species generated in this study provides valuable insights for further biodiversity studies on nereidid species.

First record of Brachaluteres ulvarum (Tetraodontiformes: Monacanthidae) from Jeju-do Island, southern Korea

  • Myoung, Se Hun;Park, Joo Myun;Lee, Hyo Jin;Jawad, Laith A.
    • Fisheries and Aquatic Sciences
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    • v.24 no.6
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    • pp.228-234
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    • 2021
  • A single specimen (39.4 mm standard length) of Brachaluteres ulvarum, belonging to the family Monacanthidae has been recorded for the first time from Supseom, Jeju-do Island of southern Korea on 6 March 2021. This species was characterized by the presence of a small second dorsal spine present, the posterior end of pelvic without encasing scales, and numerous thin dark longitudinal lines on body. It was morphologically similar to the B. taylori, but distinguished by the ratio of the caudal peduncle to the head length (B. ulvarum, 2.5 to 3.7 times; B. taylori, 3.5 to 5.2 times). In addition, the former is well distinguished from the latter through mitochondrial cytochrome c oxidase subunit I (COI) sequences by genetic distances of range from 0.088 to 0.090. The new Korean name "Kko-ma-jwi-chi- sog" is proposed for the genus Brachaluteres, and "Kko-ma-jwi-chi" for the species B. ulvarum.

A New Record of Prionospio depauperata (Annelida: Polychaeta: Spionidae) with DNA Barcoding Data of Four Prionospio Species in South Korea

  • Lee, Geon Hyeok;Yoon, Seong Myeong;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.4
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    • pp.382-386
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    • 2020
  • In this study, Prionospio depauperata Imajima, 1990 is newly reported in Korean fauna. Prionospio depauperata can be distinguished from other relatives by the four pairs of branchiae which are pinnate on chaetigers 2 and 5, and apinnate on chaetigers 3 and 4; caruncle extending to the end of chaetiger 2; and moderate dorsal crest present on chaetigers 7-13. The morphological diagnosis of P. depauperata are provided with the photographs of four Prionospio species. The mitochondrial cytochrome c oxidase subunit 1 (CO1), 16S ribosomal DNA (16S rDNA), and the nuclear 18S ribosomal DNA (18S rDNA) sequences of four Prionospio species from Korean waters, P. depauperata Imajima, 1990, P. japonica Okuda, 1935, P. krusadensis Fauvel, 1929, and P. membranacea Imajima, 1990, were determined for the first time. The inter-specific genetic distances among the congeners of four Prionospio species were 22.3-29.6% in CO1, 10.5-25.0% in 16S rDNA, and 0.3-3.6% in 18S rDNA.

Mitochondrial DNA-based investigation of dead rorqual (Cetacea: Balaenopteridae) from the west coast of India

  • Shantanu Kundu;Manokaran Kamalakannan;Dhriti Banerjee;Flandrianto Sih Palimirmo;Arif Wibowo;Hyun-Woo Kim
    • Fisheries and Aquatic Sciences
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    • v.27 no.1
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    • pp.48-55
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    • 2024
  • The study assessed the utility of mitochondrial DNA for identifying a deceased rorqual discovered off the western coast of India. Both the COI and Cytb genes exhibited remarkable 99-100% similarity with the GenBank sequence of Balaenoptera musculus through a global BLAST search, confirming their affiliation with this species. Inter-species genetic distances for COI and Cytb genes ranged from 6.75% to 9.80% and 7.37% to 10.96% respectively, compared with other Balaenopteridae species. The Bayesian phylogenies constructed based on both COI and Cytb genes demonstrated clear and separate clustering for all Balaenopteridae species, further reaffirming their distinctiveness, while concurrently revealing a cohesive clustering pattern of the generated sequences within the B. musculus clade. Beyond species confirmation, this study provides valuable insights into the presence of live and deceased B. musculus individuals within Indian marine ecosystems. This information holds significant potential for guiding conservation efforts aimed at safeguarding Important Marine Mammal Areas (IMMAs) in India over the long term.

Estimating the maximum pounding force for steel tall buildings in proximity subjected to wind

  • Tristen Brown;Ahmed Elshaer;Anas Issa
    • Wind and Structures
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    • v.39 no.1
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    • pp.47-69
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    • 2024
  • Pounding of structures may result in considerable damages, to the extent of total failure during severe lateral loading events (e.g., earthquakes and wind). With the new generation of tall buildings in densely occupied locations, wind-induced pounding becomes of higher risk due to such structures' large deflections. This paper aims to develop mathematical formulations to determine the maximum pounding force when two adjacent structures come into contact. The study will first investigate wind-induced pounding forces of two equal-height structures with similar dynamic properties. The wind loads will be extracted from the Large Eddy Simulation models and applied to a Finite Element Method model to determine deflections and pounding forces. A Genetic Algorithm is lastly utilized to optimize fitting parameters used to correlate the maximum pounding force to the governing structural parameters. The results of the wind-induced pounding show that structures with a higher natural frequency will produce lower maximum pounding forces than those of the same structure with a lower natural frequency. In addition, taller structures are more susceptible to stronger pounding forces at closer separation distances. It was also found that the complexity of the mathematical formula from optimization depends on achieving a more accurate mapping for the trained database.

Study on Genetic Evaluation using Genomic Information in Animal Breeding - Simulation Study for Estimation of Marker Effects (가축 유전체정보 활용 종축 유전능력 평가 연구 - 표지인자 효과 추정 모의실험)

  • Cho, Chung-Il;Lee, Deuk-Hwan
    • Journal of Animal Science and Technology
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    • v.53 no.1
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    • pp.1-6
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    • 2011
  • This simulation study was performed to investigate the accuracy of the estimated breeding value by using genomic information (GEBV) by way of Bayesian framework. Genomic information by way of single nucleotide polymorphism (SNP) from a chromosome with length of 100cM were simulated with different marker distance (0.1cM, 0.5cM), heritabilities (0.1, 0.5) and half sibs families (20 heads, 4 heads). For generating the simulated population in which animals were inferred to genomic polymorphism, we assumed that the number of quantitative trait loci (QTL) were equal with the number of no effect markers. The positions of markers and QTLs were located with even and scatter distances, respectively. The accuracies of estimated breeding values by way of indicating correlations between true and estimated breeding values were compared on several cases of marker distances, heritabilities and family sizes. The accuracies of breeding values on animals only having genomic information were 0.87 and 0.81 in marker distances of 0.1cM and 0.5cM, respectively. These accuracies were shown to be influenced by heritabilities (0.87 at $h^2$ =0.10, 0.94 at $h^2$ =0.50). According to half sibs' family size, these accuracies were 0.87 and 0.84 in family size of 20 and 4, respectively. As half sibs family size is high, accuracy of breeding appeared high. Based on the results of this study it is concluded that the amount of marker information, heritability and family size would influence the accuracy of the estimated breeding values in genomic selection methodology for animal breeding.

Genetic Evaluation of Thoroughbred Racehorses Using the Integrated Racing Records Collected from Different Racetracks (과천.부산경남 경마공원의 통합경주자료를 이용한 더러브렛 경주마의 유전능력 평가)

  • Cho, Kwang-Hyun;Son, Sam-Kyu;Cho, Byung-Wook;Kim, Jong-Gyu;Kong, Hong-Sik;Lee, Hak-Kyo;Park, Kyung-Do
    • Journal of Animal Science and Technology
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    • v.52 no.2
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    • pp.97-102
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    • 2010
  • The objective of this study was to examine the suitability of genetic evaluation models using the integrated racing records collected from Gwacheon and Busan Gyeongnam racetracks. Results obtained are summarized as follows: In the short-distance races of 1,400 meters and less the records of finishing time at Gwacheon racetrack was superior, whereas, in the races of 1,800 meters and more it was superior in the records from Busan Gyeongnam racetrack. The effects of contemporary groups accounted for 42.7~70.2% of the total variation, and the effects of the individual race considering racing classes was the biggest in all racing distances. Heritabilities and repeatabilities for the finishing time were estimated in the range of 0.153-0.238 and 0.401-0.498, respectively. Correlation coefficients between the breeding values estimated from the integrated records and the breeding values estimated from records of Gwacheon and Busan-Gyeongnam were 0.907 and 0.803, and coefficients of rank correlations were 0.891 and 0.846, respectively. The correlation coefficients between sire's annual earning of the integrated records and Gwacheon and Busan Gyeongnam racetracks records were 0.943 and 0.886, and coefficients of rank correlations were 0.938 and 0.853, respectively. Also, the correlation coefficient of sire's annual earning between Gwacheon and Busan Gyeongnam racetracks was 0.742. The results of this analysis indicate that the genetic evaluation using the integrated racing records are reliable when the racing records from Busan Gyeongnam racetracks are stabilized and more data are accumulated.

Geographic variation of Grey-capped Greenfinch (Chloris sinica) in Korea (한국에서 방울새(Grey-capped Greenfinch, Chloris sinica)의 지리적 변이에 대한 연구)

  • Park, Jong-Gil;Kim, Joo-Eun;Jin, Kyoung-Soon;Park, Chungoo;Nam, Dong-Ha
    • Korean Journal of Ornithology
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    • v.25 no.2
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    • pp.117-125
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    • 2018
  • The Grey-capped greenfinch (Chloris sinica) is a polytypic species that exhibits complicated geographical variation in morphology. This study provides an intraspecific phylogeographic variability of C. sinica populations in Korea with their morphometric data. The observed morphometric variations were that Ulleung island population was morphologically distinct in bill length and depths as compared to the mainland populations. Phylogenetic relationships among mitochondrial COX1 regions provided evidence for genetic differentiation between Ulleung and mainland populations. However, their genetic distances and nucleotide diversities were very low, highlighting their recent divergence. The needs for additional research is heightened to substantiate if the genetic clines in different localities may arise in C. sinica subspecies, each of which could have different breeding and wintering habitats, distribution patterns, and migration pathways.