• Title/Summary/Keyword: Genetic Architecture

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Searching for critical failure surface in slope stability analysis by using hybrid genetic algorithm

  • Li, Shouju;Shangguan, Zichang;Duan, Hongxia;Liu, Yingxi;Luan, Maotian
    • Geomechanics and Engineering
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    • v.1 no.1
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    • pp.85-96
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    • 2009
  • The radius and coordinate of sliding circle are taken as searching variables in slope stability analysis. Genetic algorithm is applied for searching for critical factor of safety. In order to search for critical factor of safety in slope stability analysis efficiently and in a robust manner, some improvements for simple genetic algorithm are proposed. Taking the advantages of efficiency of neighbor-search of the simulated annealing and the robustness of genetic algorithm, a hybrid optimization method is presented. The numerical computation shows that the procedure can determine the minimal factor of safety and be applied to slopes with any geometry, layering, pore pressure and external load distribution. The comparisons demonstrate that the genetic algorithm provides a same solution when compared with elasto-plastic finite element program.

Characterization of panicle architecture and vascular bundle number at panicle neck on Oryza glaberrima introgression lines

  • Demeter, Zita;Inoue, Shota;Fujita, Daisuke
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.94-94
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    • 2017
  • Oryza sativa and Oryza glaberrima are rice cultivars distributed in Asia and Africa. There are several differences between these cultivars in morphological characteristics such as panicle structure and especially the secondary branch number of O. glaberrima is less than that of O. sativa. Generally, branch number of panicle related to a large vascular bundle number (VBN) among O. sativa and there is a wide variation of the VBN of the peduncle from where the bundles enter into the rachis branches. However, there is less information about VBN in O. glaberrima and also the relationship between VBN and branch numbers, the primary branch number (PBN) and secondary branch number (SBN). Additionally, the genetic factor for VBN and branch number in O. glaberrima is not completely exploited. In this study, phenotypic variation for VBN and panicle structure were investigated using a set of 40 $BC_3$ -derived from IRGC 104038 (O. glaberrima from Senegal) and 35 $BC_4$ -derived from IRGC103777 (O. glaberrima from Mali) introgression lines with a genetic background of japonica rice Taichung 65. Taichung 65 had 11.8 PBN, 16.0 SBN and 11.5 VBN, while IRGC 103777 had 12.0 PBN, 15.0 SBN and 15.3 VBN. The introgression lines derived from IRGC 104038 had range from 9.0 to 14.4 in the PBN, range from 9.6 to 33.5 in the SBN and range from 9.8 to 14.8 in the VBN. Additionally, the introgression lines derived from IRGC 103777 had range from 9.0 to 18.5 in the PBN, range from 10.3 to 39.0 in the SBN and range from 9.0 to 15.3 in the VBN. Among two set of introgression lines, there are significant correlation between VBN and PBN. Multiple introgression lines indicated higher PBN, SBN and VBN than Taichung 65 and these examined characteristics are supposedly controlled by quantitative traits loci. The genetic factor related to VBN and panicle architecture can be revealed using segregating population in future study.

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Optimum design and vibration control of a space structure with the hybrid semi-active control devices

  • Zhan, Meng;Wang, Sheliang;Yang, Tao;Liu, Yang;Yu, Binshan
    • Smart Structures and Systems
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    • v.19 no.4
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    • pp.341-350
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    • 2017
  • Based on the super elastic properties of the shape memory alloy (SMA) and the inverse piezoelectric effect of piezoelectric (PZT) ceramics, a kind of hybrid semi-active control device was designed and made, its mechanical properties test was done under different frequency and different voltage. The local search ability of genetic algorithm is poor, which would fall into the defect of prematurity easily. A kind of adaptive immune memory cloning algorithm(AIMCA) was proposed based on the simulation of clone selection and immune memory process. It can adjust the mutation probability and clone scale adaptively through the way of introducing memory cell and antibody incentive degrees. And performance indicator based on the modal controllable degree was taken as antigen-antibody affinity function, the optimization analysis of damper layout in a space truss structure was done. The structural seismic response was analyzed by applying the neural network prediction model and T-S fuzzy logic. Results show that SMA and PZT friction composite damper has a good energy dissipation capacity and stable performance, the bigger voltage, the better energy dissipation ability. Compared with genetic algorithm, the adaptive immune memory clone algorithm overcomes the problem of prematurity effectively. Besides, it has stronger global searching ability, better population diversity and faster convergence speed, makes the damper has a better arrangement position in structural dampers optimization leading to the better damping effect.

Client-Server System Architecture for Inferring Large-Scale Genetic Interaction Networks (대규모 유전자 상호작용 네트워크 추론을 위한 클라이언트-서버 시스템 구조)

  • Kim, Yeong-Hun;Lee, Pil-Hyeon;Lee, Do-Heon
    • Bioinformatics and Biosystems
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    • v.1 no.1
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    • pp.38-45
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    • 2006
  • We present a client-server system architecture for inferring genetic interaction networks based on Bayesian networks. It is typical to take tens of hours when genome-wide large-scale genetic interaction networks are inferred in the form of Bayesian networks. To deal with this situation, batch-style distributed system architectures are preferable to interactive standalone architectures. Thus, we have implemented a loosely coupled client-server system for network inference and user interface. The network inference consists of two stages. Firstly, the proposed method divides a whole gene set into overlapped modules, based on biological annotations and expression data together. Secondly, it infers Bayesian networks for each module, and integrates the learned subnetworks to a global network through common genes across the modules.

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A genome-wide association study on growth traits of Korean commercial pig breeds using Bayesian methods

  • Jong Hyun Jung;Sang Min Lee;Sang-Hyon Oh
    • Animal Bioscience
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    • v.37 no.5
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    • pp.807-816
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    • 2024
  • Objective: This study aims to identify the significant regions and candidate genes of growth-related traits (adjusted backfat thickness [ABF], average daily gain [ADG], and days to 90 kg [DAYS90]) in Korean commercial GGP pig (Duroc, Landrace, and Yorkshire) populations. Methods: A genome-wide association study (GWAS) was performed using single-nucleotide polymorphism (SNP) markers for imputation to Illumina PorcineSNP60. The BayesB method was applied to calculate thresholds for the significance of SNP markers. The identified windows were considered significant if they explained ≥1% genetic variance. Results: A total of 28 window regions were related to genetic growth effects. Bayesian GWAS revealed 28 significant genetic regions including 52 informative SNPs associated with growth traits (ABF, ADG, DAYS90) in Duroc, Landrace, and Yorkshire pigs, with genetic variance ranging from 1.00% to 5.46%. Additionally, 14 candidate genes with previous functional validation were identified for these traits. Conclusion: The identified SNPs within these regions hold potential value for future marker-assisted or genomic selection in pig breeding programs. Consequently, they contribute to an improved understanding of genetic architecture and our ability to genetically enhance pigs. SNPs within the identified regions could prove valuable for future marker-assisted or genomic selection in pig breeding programs.

A Study on the Characteristics of Topological Invariant Expression in the Space of Digital Architecture (디지털건축공간에 나타난 위상기하학적 불변항의 표현특성에 관한 연구)

  • Bae Kang-Won;Park Chan-Il
    • Korean Institute of Interior Design Journal
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    • v.14 no.3 s.50
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    • pp.64-72
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    • 2005
  • The purpose of this study is to propose a topological design principles and to analyze the space of digital architecture applying topological invariant expressive characteristics. As this study is based on topology as a science of true world's pattern, we intented to explain the concepts and provide some methods of low-level and hyperspace topological invariant Properties. Four major aspects are discussed. Those are connection theory, boundary concept, homotopy group, knot Pattern theory as topological invariant properties. Then we intented to make understand topological characteristics of the Algorithms, luring machine, cellular automata, string theory, membrane, DNA and supramolecular chemistry. In fine, the topological invariant properties of the digital architecture as genetic algorithms based on self-organization and heterogeneous networks of interacting actors can be analyzed and used as a critical tool. Therefore topology can be provided endless possibilities for architecture, designers and scientists intended in expressing the more complex and organic patterns of nature as life.

Feasibility study of improved particle swarm optimization in kriging metamodel based structural model updating

  • Qin, Shiqiang;Hu, Jia;Zhou, Yun-Lai;Zhang, Yazhou;Kang, Juntao
    • Structural Engineering and Mechanics
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    • v.70 no.5
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    • pp.513-524
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    • 2019
  • This study proposed an improved particle swarm optimization (IPSO) method ensemble with kriging model for model updating. By introducing genetic algorithm (GA) and grouping strategy together with elite selection into standard particle optimization (PSO), the IPSO is obtained. Kriging metamodel serves for predicting the structural responses to avoid complex computation via finite element model. The combination of IPSO and kriging model shall provide more accurate searching results and obtain global optimal solution for model updating compared with the PSO, Simulate Annealing PSO (SimuAPSO), BreedPSO and PSOGA. A plane truss structure and ASCE Benchmark frame structure are adopted to verify the proposed approach. The results indicated that the hybrid of kriging model and IPSO could serve for model updating effectively and efficiently. The updating results further illustrated that IPSO can provide superior convergent solutions compared with PSO, SimuAPSO, BreedPSO and PSOGA.

Development of Manufacturing Planning for Multi Modular Construction Project based on Genetic-Algorithm (유전자 알고리즘 기반 다중 모듈러 건축 프로젝트 수행 시 모듈러 유닛 공장생산계획수립 모델 개발)

  • Kim, Minjung;Park, Moonseo;Lee, Hyun-soo;Lee, Jeonghoon;Lee, Kwang-Pyo
    • Korean Journal of Construction Engineering and Management
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    • v.16 no.5
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    • pp.54-64
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    • 2015
  • The modular construction has several advantages such as high quality of product, safe work condition and short construction duration. The manufacturing planning of modular construction should consider time frame of manufacturing, transport and erection process with limited resources (e.g., modular units, transporter and workers). The manufacturing planning of multi modular construction project manages the modular construction's characteristics and diversity of projects, as a type of modular unit, modular unit quantities, and date for delivery. However, current modular manufacturing planning techniques are weak in dealing with resource interactions and each project requirement in multi modular construction project environments. Inefficient allocation of resources during multi modular construction project may cause delays and cost overruns to construction operation. In this circumstance, this research suggest a manufacturing planning model for schedule optimization of multi project of modular construction, using genetic algorithm as one of the powerful method for schedule optimization with multiple constrained resources. Comparing to the result of the existed schedule of case study, setting optimized scheduling for multi project decrease the total factory producing schedule. By using proposed optimization tool, efficient allocation of resource and saving project time is expected.

The Origin of Artificial Species: Genetic Robot

  • Kim Jong-Hwan;Lee Kang-Hee;Kim Yong-Duk
    • International Journal of Control, Automation, and Systems
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    • v.3 no.4
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    • pp.564-570
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    • 2005
  • This paper provides a basis for investigating 'The Origin of Artificial Species,' as a robot can be considered as an artificial creature. To design an artificial creature, its general internal architecture is presented and its artificial chromosomes are proposed as its essential components. Rity as an artificial creature is developed in a virtual world of PC to test the world's first robotic 'chromosomes,' which are a set of computerized DNA (Deoxyribonucleic acid) codes for creating robots (artificial creatures) that can have their own personality, and can ultimately reproduce their kind, or even evolve as a distinct species. The effectiveness of the artificial chromosomes is demonstrated by implanting the genetic code into two Ritys living in a virtual world, in order to define their personality.

Shear strength of RC beams. Precision, accuracy, safety and simplicity using genetic programming

  • Cladera, Antoni;Perez-Ordonez, Juan L.;Martinez-Abella, Fernando
    • Computers and Concrete
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    • v.14 no.4
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    • pp.479-501
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    • 2014
  • This paper presents the improvement of the EC-2 and EHE-08 shear strength formulations for concrete beams with shear reinforcement. The employed method is based on the genetic programming (GP) technique, which is configured to generate symbolic regression from a set of experimental data by considering the interactions among precision, accuracy, safety and simplicity. The size effect and the influence of the amount of shear reinforcement are examined. To develop and verify the models, 257 experimental tests on concrete beams from the literature are used. Three expressions of considerable simplicity, which significantly improve the shear strength prediction with respect to the formulations of the different studied codes, are proposed.