• Title/Summary/Keyword: Frequent Pattern Network

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CONSTRUCTING GENE REGULATORY NETWORK USING FREQUENT GENE EXPRESSION PATTERN MINING AND CHAIN RULES

  • Park, Hong-Kyu;Lee, Heon-Gyu;Cho, Kyung-Hwan;Ryu, Keun-Ho
    • Proceedings of the KSRS Conference
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    • v.2
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    • pp.623-626
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    • 2006
  • Group of genes controls the functioning of a cell by complex interactions. These interacting gene groups are called Gene Regulatory Networks (GRNs). Two previous data mining approaches, clustering and classification have been used to analyze gene expression data. While these mining tools are useful for determining membership of genes by homology, they don't identify the regulatory relationships among genes found in the same class of molecular actions. Furthermore, we need to understand the mechanism of how genes relate and how they regulate one another. In order to detect regulatory relationships among genes from time-series Microarray data, we propose a novel approach using frequent pattern mining and chain rule. In this approach, we propose a method for transforming gene expression data to make suitable for frequent pattern mining, and detect gene expression patterns applying FP-growth algorithm. And then, we construct gene regulatory network from frequent gene patterns using chain rule. Finally, we validated our proposed method by showing that our experimental results are consistent with published results.

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Discovering Association Rules using Item Clustering on Frequent Pattern Network (빈발 패턴 네트워크에서 아이템 클러스터링을 통한 연관규칙 발견)

  • Oh, Kyeong-Jin;Jung, Jin-Guk;Ha, In-Ay;Jo, Geun-Sik
    • Journal of Intelligence and Information Systems
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    • v.14 no.1
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    • pp.1-17
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    • 2008
  • Data mining is defined as the process of discovering meaningful and useful pattern in large volumes of data. In particular, finding associations rules between items in a database of customer transactions has become an important thing. Some data structures and algorithms had been proposed for storing meaningful information compressed from an original database to find frequent itemsets since Apriori algorithm. Though existing method find all association rules, we must have a lot of process to analyze association rules because there are too many rules. In this paper, we propose a new data structure, called a Frequent Pattern Network (FPN), which represents items as vertices and 2-itemsets as edges of the network. In order to utilize FPN, We constitute FPN using item's frequency. And then we use a clustering method to group the vertices on the network into clusters so that the intracluster similarity is maximized and the intercluster similarity is minimized. We generate association rules based on clusters. Our experiments showed accuracy of clustering items on the network using confidence, correlation and edge weight similarity methods. And We generated association rules using clusters and compare traditional and our method. From the results, the confidence similarity had a strong influence than others on the frequent pattern network. And FPN had a flexibility to minimum support value.

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Constructing Gene Regulatory Networks using Frequent Gene Expression Pattern and Chain Rules (빈발 유전자 발현 패턴과 연쇄 규칙을 이용한 유전자 조절 네트워크 구축)

  • Lee, Heon-Gyu;Ryu, Keun-Ho;Joung, Doo-Young
    • The KIPS Transactions:PartD
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    • v.14D no.1 s.111
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    • pp.9-20
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    • 2007
  • Groups of genes control the functioning of a cell by complex interactions. Such interactions of gene groups are tailed Gene Regulatory Networks(GRNs). Two previous data mining approaches, clustering and classification, have been used to analyze gene expression data. Though these mining tools are useful for determining membership of genes by homology, they don't identify the regulatory relationships among genes found in the same class of molecular actions. Furthermore, we need to understand the mechanism of how genes relate and how they regulate one another. In order to detect regulatory relationships among genes from time-series Microarray data, we propose a novel approach using frequent pattern mining and chain rules. In this approach, we propose a method for transforming gene expression data to make suitable for frequent pattern mining, and gene expression patterns we detected by applying the FP-growth algorithm. Next, we construct a gene regulatory network from frequent gene patterns using chain rules. Finally, we validate our proposed method through our experimental results, which are consistent with published results.

Clustering Algorithm using the DFP-Tree based on the MapReduce (맵리듀스 기반 DFP-Tree를 이용한 클러스터링 알고리즘)

  • Seo, Young-Won;Kim, Chang-soo
    • Journal of Internet Computing and Services
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    • v.16 no.6
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    • pp.23-30
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    • 2015
  • As BigData is issued, many applications that operate based on the results of data analysis have been developed, typically applications are products recommend service of e-commerce application service system, search service on the search engine service and friend list recommend system of social network service. In this paper, we suggests a decision frequent pattern tree that is combined the origin frequent pattern tree that is mining similar pattern to appear in the data set of the existing data mining techniques and decision tree based on the theory of computer science. The decision frequent pattern tree algorithm improves about problem of frequent pattern tree that have to make some a lot's pattern so it is to hard to analyze about data. We also proposes to model for a Mapredue framework that is a programming model to help to operate in distributed environment.

Incremental Frequent Pattern Detection Scheme Based on Sliding Windows in Graph Streams (그래프 스트림에서 슬라이딩 윈도우 기반의 점진적 빈발 패턴 검출 기법)

  • Jeong, Jaeyun;Seo, Indeok;Song, Heesub;Park, Jaeyeol;Kim, Minyeong;Choi, Dojin;Bok, Kyoungsoo;Yoo, Jaesoo
    • The Journal of the Korea Contents Association
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    • v.18 no.2
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    • pp.147-157
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    • 2018
  • Recently, with the advancement of network technologies, and the activation of IoT and social network services, many graph stream data have been generated. As the relationship between objects in the graph streams changes dynamically, studies have been conducting to detect or analyze the change of the graph. In this paper, we propose a scheme to incrementally detect frequent patterns by using frequent patterns information detected in previous sliding windows. The proposed scheme calculates values that represent whether the frequent patterns detected in previous sliding windows will be frequent in how many future silding windows. By using the values, the proposed scheme reduces the overall amount of computation by performing only necessary calculations in the next sliding window. In addition, only the patterns that are connected between the patterns are recognized as one pattern, so that only the more significant patterns are detected. We conduct various performance evaluations in order to show the superiority of the proposed scheme. The proposed scheme is faster than existing similar scheme when the number of duplicated data is large.

Analysis and Evaluation of Frequent Pattern Mining Technique based on Landmark Window (랜드마크 윈도우 기반의 빈발 패턴 마이닝 기법의 분석 및 성능평가)

  • Pyun, Gwangbum;Yun, Unil
    • Journal of Internet Computing and Services
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    • v.15 no.3
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    • pp.101-107
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    • 2014
  • With the development of online service, recent forms of databases have been changed from static database structures to dynamic stream database structures. Previous data mining techniques have been used as tools of decision making such as establishment of marketing strategies and DNA analyses. However, the capability to analyze real-time data more quickly is necessary in the recent interesting areas such as sensor network, robotics, and artificial intelligence. Landmark window-based frequent pattern mining, one of the stream mining approaches, performs mining operations with respect to parts of databases or each transaction of them, instead of all the data. In this paper, we analyze and evaluate the techniques of the well-known landmark window-based frequent pattern mining algorithms, called Lossy counting and hMiner. When Lossy counting mines frequent patterns from a set of new transactions, it performs union operations between the previous and current mining results. hMiner, which is a state-of-the-art algorithm based on the landmark window model, conducts mining operations whenever a new transaction occurs. Since hMiner extracts frequent patterns as soon as a new transaction is entered, we can obtain the latest mining results reflecting real-time information. For this reason, such algorithms are also called online mining approaches. We evaluate and compare the performance of the primitive algorithm, Lossy counting and the latest one, hMiner. As the criteria of our performance analysis, we first consider algorithms' total runtime and average processing time per transaction. In addition, to compare the efficiency of storage structures between them, their maximum memory usage is also evaluated. Lastly, we show how stably the two algorithms conduct their mining works with respect to the databases that feature gradually increasing items. With respect to the evaluation results of mining time and transaction processing, hMiner has higher speed than that of Lossy counting. Since hMiner stores candidate frequent patterns in a hash method, it can directly access candidate frequent patterns. Meanwhile, Lossy counting stores them in a lattice manner; thus, it has to search for multiple nodes in order to access the candidate frequent patterns. On the other hand, hMiner shows worse performance than that of Lossy counting in terms of maximum memory usage. hMiner should have all of the information for candidate frequent patterns to store them to hash's buckets, while Lossy counting stores them, reducing their information by using the lattice method. Since the storage of Lossy counting can share items concurrently included in multiple patterns, its memory usage is more efficient than that of hMiner. However, hMiner presents better efficiency than that of Lossy counting with respect to scalability evaluation due to the following reasons. If the number of items is increased, shared items are decreased in contrast; thereby, Lossy counting's memory efficiency is weakened. Furthermore, if the number of transactions becomes higher, its pruning effect becomes worse. From the experimental results, we can determine that the landmark window-based frequent pattern mining algorithms are suitable for real-time systems although they require a significant amount of memory. Hence, we need to improve their data structures more efficiently in order to utilize them additionally in resource-constrained environments such as WSN(Wireless sensor network).

Design of Geocasting in MANET using the Improved LBM

  • Lee, Cheol-Seung;Lee, Joon
    • The Journal of the Korea institute of electronic communication sciences
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    • v.2 no.2
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    • pp.99-105
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    • 2007
  • MANET(Mobile Ad-hoc network) have recently attracted a lot of attention in the research community as well as in industry. Although the previous research mainly focused on various of MANET in routing, we consider, in this paper, how to efficiently support applications such as variable geocasting basd on MANET. The goal of a geocasting protocol is deliver data packet to a group of nodes that are located within a specified geocasting region. Previous research that support geocast service in mobilie computing based on MANET have the non-optimization problem of data delivery path, overhead by frequent reconstruction of the geocast tree, and service disruption problem. In this paper, we propose the mobility pattern based geocast technique using variable service range according to the mobility of destination node and resource reservation to solve this problem. The experimental results show that our proposed mechanism has improved performance of Accessibility & Network Overhead than previous research.

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Fault Detection and Damage Pattern Analysis of a Gearbox Using the Power Spectra Density and Artificial Neural Network (파워스펙트럼 및 신경망회로를 이용한 기어박스의 결함진단 및 결함형태 분류에 관한 연구)

  • Lee, Sang-Kwon
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.27 no.4
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    • pp.537-543
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    • 2003
  • Transient vibration generated by developing localized fault in gear can be used as indicators in gear fault detection. This vibration signal suffers from the background noise such as gear meshing frequency and its harmonics and broadband noise. Thus in order to extract the information about the only gear fault from the raw vibration signal measured on the gearbox this signal is processed to reduce the background noise with many kinds of signal-processing tools. However, these signal-processing tools are often very complex and time waste. Thus. in this paper. we propose a novel approach detecting the damage of gearbox and analyzing its pattern using the raw vibration signal. In order to do this, the residual signal. which consists of the sideband components of the gear meshing frequent) and its harmonics frequencies, is extracted from the raw signal by the power spectral density (PSD) to obtain the information about the fault and is used as the input data of the artificial neural network (ANN) for analysis of the pattern of gear fault. This novel approach has been very successfully applied to the damage analysis of a laboratory gearbox.

In-memory Compression Scheme Based on Incremental Frequent Patterns for Graph Streams (그래프 스트림 처리를 위한 점진적 빈발 패턴 기반 인-메모리 압축 기법)

  • Lee, Hyeon-Byeong;Shin, Bo-Kyoung;Bok, Kyoung-Soo;Yoo, Jae-Soo
    • The Journal of the Korea Contents Association
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    • v.22 no.1
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    • pp.35-46
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    • 2022
  • Recently, with the development of network technologies, as IoT and social network service applications have been actively used, a lot of graph stream data is being generated. In this paper, we propose a graph compression scheme that considers the stream graph environment by applying graph mining to the existing compression technique, which has been focused on compression rate and runtime. In this paper, we proposed Incremental frequent pattern based compression technique for graph streams. Since the proposed scheme keeps only the latest reference patterns, it increases the storage utilization and improves the query processing time. In order to show the superiority of the proposed scheme, various performance evaluations are performed in terms of compression rate and processing time compared to the existing method. The proposed scheme is faster than existing similar scheme when the number of duplicated data is large.

Authenticated Handoff with Low Latency and Traffic Management in WLAN (무선랜에서 낮은 지연 특성을 가지는 인증유지 핸드오프 기법과 트래픽 관리 기법)

  • Choi Jae-woo;Nyang Dae-hun;Kang Jeon-il
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.15 no.2
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    • pp.81-94
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    • 2005
  • Recently, wireless LAN circumstance is being widely deployed in Public spots. Many People use Portable equipments such as PDA and laptop computer for multimedia applications, and also demand of mobility support is increasing. However, handoff latency is inevitably occurred between both APs when clients move from one AP to another. To reduce handoff latency. in this paper, we suggest WFH(Weighted Frequent Handoff) using effective data structure. WFH improves cache hit ratio using a new cache replacement algorithm considering the movement pattern of users. It also reduces unessential duplicate traffics. Our algorithm uses FHR(Frequent Handoff Region) that can change pre-authentication lesion according to QoS based user level, movement Pattern and Neighbor Graph that dynamically captures network movement topology.