• Title/Summary/Keyword: ENCODE

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The Calculation of Physical Properties of Amino Acids Using Molecular Modeling Techniques (II)

  • Lee, Myung-Jae;Kim, Ui-Rak
    • Bulletin of the Korean Chemical Society
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    • v.25 no.7
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    • pp.1046-1050
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    • 2004
  • Six physical properties (enthalpy, density, decomposition temperature, solubility in water, pKa values, and hydronium potential) were examined by molecular modeling techniques. The molecular connectivity index, Wiener distance index, and Ad hoc descriptor are employed as structural parameters to encode information about branching, size, cyclization, unsaturation, heteroatom content, and polarizability. This paper examines the correlation of the molecular modeling techniques parameters and the physicochemical properties of amino acids. As a results, calculated values were in agreement with experimental data in the above six physical properties of amino acids and the molecular connectivity index was superior to the other indices in fitting the calculated data.

EXTRACTION OF CHARACTERS FROM THE QUADTREE ENCODE DOCUMENT IMAGE OF HANGUL (쿼드트리로 구성된 한글 문서 영상에서의 문자추출에 관한 연구)

  • Park, Eun-Kyoung;Cho, Dong-Sub
    • Proceedings of the KIEE Conference
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    • 1991.11a
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    • pp.201-204
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    • 1991
  • In this paper the method of representing the document image by the quadtree data structure, and extracting each character seperately from the constructed quadtree are described. The document image is represented by a binary encoded quadtree and the segmentation is performed according to the information of each leaf node of the quadtree. Then, each character is extracted by the relation of positions of segments. This method enables to extract characters without examining every pixel in the image and the required storage of document image is decreased.

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Development of an Educational System and Real Time Nonlinear Control (II) (교육용 시스템 개발과 실시간 비선형 제어(II))

  • 박성욱
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.51 no.12
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    • pp.571-576
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    • 2002
  • This paper is to develop jumping ring system with three sensor arrays and to control levitated ring using dynamic neural mode. Placing an aluminum ring on the core and switching on an AC source causes the ring to jump in the air due to induced currents. The educational system is composed of 40th optical sensor array, encode circuit, 89C51 microprocessor and control board. The control board consists of power IC, and phase controller. Real time process is present to obtain a height of levitated ring for three different sensor arrays. Based on the educational system and the proposed dynamic neural mode, the height of levitation of the ring is controlled by reference signals. This paper focuses on real system controls using the dynamic neural mode with on line learning algorithm.

Genetic Scheduling Algorithm for FFT Dta Flows in Parallel Computers (병렬 컴퓨터 시스템에서의 FFT 데이터 흐름도에 관한 유전 스케줄링 알고리즘)

  • 박월선;김금호;서루비;윤성대
    • Proceedings of the IEEK Conference
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    • 2000.06c
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    • pp.161-164
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    • 2000
  • We propose the genetic algorithm to apply three kinds of FFT data flows to be considered the overhead for the data exchange between processors that have the multi-scheduling problem on parallel computer In the design of genetic algorithm, we propose the chromosome representation which can simply encode and decode a solution without any heuristic information, the evaluation function to be considered an efficiency of processor, and the genetic operator to inherit a superior gene from their parents. And we saw that the simulation result can verify better performance than the existing algorithm(BEA : binary exchange algorithm)in the face of execution time.

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Fuzzy Model Identification for Time Series System Using Wavelet Transform and Genetic DNA-Code

  • Lee, Yeun-Woo;Kim, Jung-Chan;Joo, Young-Hoon
    • Proceedings of the Korean Institute of Intelligent Systems Conference
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    • 2003.09a
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    • pp.322-325
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    • 2003
  • In this paper, we propose n new fuzzy model identification of time series system using wavelet transform and genetic DNA code. Generally, it is well known that the DNA coding method is more diverse in the knowledge expression and better in the optimization performance than the genetic algorithm (GA) because it can encode more plentiful genetic information based on the biological DNA. The proposed method can construct a fuzzy model using the wavelet transform, in which the coefficients are identified by the DNA coding method. Thus, we can effectively get the fuzzy model of the nonlinear system by using the advantages of both wavelet transform and DNA coding method. In order to demonstrate the superiority of the proposed method, it is compared with modeling method using the conventional GA.

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Alternative Splicing and Its Impact as a Cancer Diagnostic Marker

  • Kim, Yun-Ji;Kim, Heui-Soo
    • Genomics & Informatics
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    • v.10 no.2
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    • pp.74-80
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    • 2012
  • Most genes are processed by alternative splicing for gene expression, resulting in the complexity of the transcriptome in eukaryotes. It allows a limited number of genes to encode various proteins with intricate functions. Alternative splicing is regulated by genetic mutations in cis-regulatory factors and epigenetic events. Furthermore, splicing events occur differently according to cell type, developmental stage, and various diseases, including cancer. Genome instability and flexible proteomes by alternative splicing could affect cancer cells to grow and survive, leading to metastasis. Cancer cells that are transformed by aberrant and uncontrolled mechanisms could produce alternative splicing to maintain and spread them continuously. Splicing variants in various cancers represent crucial roles for tumorigenesis. Taken together, the identification of alternative spliced variants as biomarkers to distinguish between normal and cancer cells could cast light on tumorigenesis.

Modified Version of SVM for Text Categorization

  • Jo, Tae-Ho
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • v.8 no.1
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    • pp.52-60
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    • 2008
  • This research proposes a new strategy where documents are encoded into string vectors for text categorization and modified versions of SVM to be adaptable to string vectors. Traditionally, when the traditional version of SVM is used for pattern classification, raw data should be encoded into numerical vectors. This encoding may be difficult, depending on a given application area of pattern classification. For example, in text categorization, encoding full texts given as raw data into numerical vectors leads to two main problems: huge dimensionality and sparse distribution. In this research, we encode full texts into string vectors, and apply the modified version of SVM adaptable to string vectors for text categorization.

Modeling of RGB mass-loss to predict the HB mass distribution in globular clusters

  • Pasquato, Mario
    • The Bulletin of The Korean Astronomical Society
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    • v.38 no.2
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    • pp.79.2-79.2
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    • 2013
  • The distributions of Horizontal Branch (HB) star color, temperature, and mass encode a great deal of information on the stellar evolutionary and (possibly) dynamical processes taking place in Globular Clusters (GCs). An accurate physical modeling of the Red Giant Branch (RGB) mass-loss process is key to solving the so-called second parameter problem. In my poster I will present the most recent advancements of an analytical model for mass-loss along the RGB. The model predicts the HB mass distribution with remarkable accuracy over a sample of 4 GCs. These results were submitted as a paper to ApJ (Pasquato et al. 2013, ApJ submitted), but here I expand on them presenting refinements to the model and a comparison with HB masses obtained from Galex ultraviolet observations.

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Malonate Metabolism: Biochemistry, Molecular Biology, Physiology, and Industrial Application

  • Kim, Yu-Sam
    • BMB Reports
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    • v.35 no.5
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    • pp.443-451
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    • 2002
  • Malonate is a three-carbon dicarboxylic acid. It is well known as a competitive inhibitor of succinate dehydrogenase. It occurs naturally in biological systems, such as legumes and developing rat brains, which indicates that it may play an important role in symbiotic nitrogen metabolism and brain development. Recently, enzymes that are related to malonate metabolism were discovered and characterized. The genes that encode the enzymes were isolated, and the regulation of their expression was also studied. The mutant bacteria, in which the malonate-metabolizing gene was deleted, lost its primary function, symbiosis, between Rhizobium leguminosarium bv trifolii and clover. This suggests that malonate metabolism is essential in symbiotic nitrogen metabolism, at least in clover nodules. In addition to these, the genes matB and matC have been successfully used for generation of the industrial strain of Streptomyces for the production of antibiotics.

A Study of the Interface between Korean Sentence Parsing and Lexical Information (한국어 문장분석과 어휘정보의 연결에 관한 연구)

  • 최병진
    • Language and Information
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    • v.4 no.2
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    • pp.55-68
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    • 2000
  • The efficiency and stability of an NLP system depends crucially on how is lexicon is orga- nized . Then lexicon ought to encode linguistic generalizations and exceptions thereof. Nowadays many computational linguists tend to construct such lexical information in an inheritance hierarchy DATR is good for this purpose In this research I will construct a DATR-lexicon in order to parse sentences in Korean using QPATR is implemented on the basis of a unification based grammar developed in Dusseldorf. In this paper I want to show the interface between a syntactic parser(QPATR) and DTAR-formalism representing lexical information. The QPATR parse can extract the lexical information from the DATR lexicon which is organised hierarchically.

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