• Title/Summary/Keyword: DomainAlignment

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Ontology Alignment by Using Discrete Cuckoo Search (이산 Cuckoo Search를 이용한 온톨로지 정렬)

  • Han, Jun;Jung, Hyunjun;Baik, Doo-Kwon
    • KIPS Transactions on Software and Data Engineering
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    • v.3 no.12
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    • pp.523-530
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    • 2014
  • Ontology alignment is the way to share and reuse of ontology knowledge. Because of the ambiguity of concept, most ontology alignment systems combine a set of various measures and complete enumeration to provide the satisfactory result. However, calculating process becomes more complex and required time increases exponentially since the number of concept increases, more errors can appear at the same time. Lately the focus is on meta-matching using the heuristic algorithm. Existing meta-matching system tune extra parameter and it causes complex calculating, as a consequence, the results in the various data of specific domain are not good performed. In this paper, we propose a high performance algorithm by using DCS that can solve ontology alignment through simple process. It provides an efficient search strategy according to distribution of Levy Flight. In order to evaluate the approach, benchmark data from the OAEI 2012 is employed. Through the comparison of the quality of the alignments which uses DCS with state of the art ontology matching systems.

Molecular interaction between SH3 domain of PACSIN2 and proline-rich motifs of Cobll1

  • Yoo, Hee-Seop;Seok, Seung-Hyeon;Kim, Ha-Neul;Kim, Ji-Hun;Seo, Min-Duk
    • Journal of the Korean Magnetic Resonance Society
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    • v.26 no.3
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    • pp.34-39
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    • 2022
  • The SH3 domain found within a variety of proteins is comprised of generally 60 residues, and participated in protein-protein interactions with proline-rich motifs. Cobll1 was identified as a distinct molecular marker associated with CML progression, and PACSIN2 was discovered a novel Cobll1 binding partner through direct interaction between a SH3 domain of PACSIN2 and three proline-rich motifs of Cobll1. To understand the structural basis of interactions between PACSIN2 and Cobll1, backbone assignments of PACSIN2 SH3 domain were performed. Furthermore, three proline-rich peptides of Cobll1 were titrated to 15N-labeled PACSIN2 SH3 domain in various ratios. Our chemical shift changes data and conserved SH3 sequence alignment will be helpful to analyze fundamental molecular basis related to the interaction between PACSIN2 and Cobll1.

Three Common Subunits in the Editing Domains of Class Ia tRNA Synthetases.

  • Lee, Keun-Woo;Kwon, Yong-Jung;Briggs, James M.
    • Journal of Industrial Technology
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    • v.24 no.B
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    • pp.139-142
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    • 2004
  • To identify conserved structural or functional subunit(s) in the CP1 (editing) domains of class Ia tRNA synthetases, five available structures were compared and analyzed. Through sequence alignments of the CP1 domains, three conserved regions were found near the amino acid binding site in the editing domain. Structural overlapping of the three subunits clearly showed that there exist three common structural subunits in all of the five editing RS structures. The new alignment suggests a translocation movement of the CP1 domain caused by the binding with tRNA. Based on the experimental and modeling results, it is proposed that subunits 1 and 3 accommodate the incoming amino acid binding, while subunit 2 contributes to the interactions with the adenosine ring of the A76 to stabilize the overall tRNA binding.. Since these subunits are critical for the editing reaction, we expect that these key structures should be conserved through all class Ia editing RSs.

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Time-Domain Quantization and Interpolation of Pitch Cycle Waveform

  • Kim, Moo-Young
    • The Journal of the Acoustical Society of Korea
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    • v.27 no.1E
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    • pp.11-16
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    • 2008
  • In this paper, a pitch cycle waveform (PCW) is extracted, quantized, and interpolated in a time domain to synthesize high-quality speech at low bit rates. The pre-alignment technique is proposed for the accurate and efficient PCW extraction, which predicts the current PCW position from the previous PCW position assuming that pitch periods evolve slowly. Since the pitch periods are different frame by frame, the original PCW is converted into the fixed-dimension PCW using the dimension-conversion method, and subsequently quantized by code-excited linear predictive (CELP) coding. The excitation signal for the linear predictive coding (LPC) synthesis filter is generated using the time-domain interpolation and interlink of the quantized PCW's. The coder operates at 4.2 kbit/s and 3.2 kbit/s depending on the pitch period. Informal listening test demonstrates the effectiveness of the proposed coding scheme.

Basic Principle for Determining Azimuthal Anchoring Strength by using HAN/TN Two Domain Liquid Crystal Cell

  • Tanaka, Norihiko;Kimura, Munehiro;Akahane, Tadashi
    • 한국정보디스플레이학회:학술대회논문집
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    • 2005.07a
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    • pp.324-327
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    • 2005
  • We propose a novel technique for evaluating the azimuthal anchoring strength of the alignment film on the nematic liquid crystal (LC). In our evaluation, a unique cell, which has two domain in one cell, was used; one is hybrid aligned nematic (HAN) region, the other is twsited nematic (TN) region (viz. HAN/TN two domain cell). From the comparison of director angles on the front substrate with each region, we are able to determine the angle between easy axis and real director axis on the front substrate. From this evaluation, the azimuthal anchoring strength was obtained accurately.

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Ontology Matching Method Based on Word Embedding and Structural Similarity

  • Hongzhou Duan;Yuxiang Sun;Yongju Lee
    • International journal of advanced smart convergence
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    • v.12 no.3
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    • pp.75-88
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    • 2023
  • In a specific domain, experts have different understanding of domain knowledge or different purpose of constructing ontology. These will lead to multiple different ontologies in the domain. This phenomenon is called the ontology heterogeneity. For research fields that require cross-ontology operations such as knowledge fusion and knowledge reasoning, the ontology heterogeneity has caused certain difficulties for research. In this paper, we propose a novel ontology matching model that combines word embedding and a concatenated continuous bag-of-words model. Our goal is to improve word vectors and distinguish the semantic similarity and descriptive associations. Moreover, we make the most of textual and structural information from the ontology and external resources. We represent the ontology as a graph and use the SimRank algorithm to calculate the structural similarity. Our approach employs a similarity queue to achieve one-to-many matching results which provide a wider range of insights for subsequent mining and analysis. This enhances and refines the methodology used in ontology matching.

Analysis method for the Measured Track Geometry Data using Wavelet Transform (웨이브렛 변환을 이용한 궤도틀림 분석)

  • Lee, In-Kyu;Kim, Sung-Il;Yeo, In-Ho
    • Journal of the Korean Society for Railway
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    • v.9 no.2 s.33
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    • pp.187-192
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    • 2006
  • The regularity of railway track alignment is a crucial component fur maintaining travel safety and the smoothness of passenger ride. The conventional spectral analysis has been considered to estimate the severity of the track irregularity from measured data. The time domain data used to be changed into the frequency domain by Fourier transform. Because the measuring points can be regarded as the time points, the spatial-frequency can be introduced instead of the time-frequency. Although FFT(Fast Fourier Transform) and/or PSD(Power Spectral Density) function could provide fairly localized information within frequency domain, but chronical configurations of data could be missed. In this study, we attempt to apply the Morlet wavelet transform for the purpose of a frequency-time-domain analysis rather than a frequency-domain analysis. The applicability of wavelet transform is examined for the estimation of the track irregularity with real measured track data on the section of Kyoung-bu line by EM-120 measuring vehicle. It is shown that the wavelet transform can be an effective tool to manage the track irregularity.

Functional Role of a Conserved Sequence Motif in the Oxygen-dependent Degradation Domain of Hypoxia-inducible Factor 1α in the Recognition of p53

  • Chi, Seung-Wook
    • Genomics & Informatics
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    • v.6 no.2
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    • pp.72-76
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    • 2008
  • Hypoxia-inducible factor $1{\alpha}\;(HIF1{\alpha})$ is a transcription factor that plays a key role in the adaptation of cells to low oxygen stress and oxygen homeostasis. The oxygen-dependent degradation (ODD) domain of $HIF1{\alpha}$ is responsible for the negative regulation of $HIF1{\alpha}$ in normoxia. The interactions of the $HIF1{\alpha}$ ODD domain with partner proteins such as von Hippel-Lindau tumor suppressor (pVHL) and p53 are mediated by two sequence motifs, the N- and C-terminal ODD(NODD and CODD). Multiple sequence alignment with $HIF1{\alpha}$ homologs from human, monkey, pig, rat, mouse, chicken, frog, and zebrafish has demonstrated that the NODD and CODD motifs have noticeably high conservation of the primary sequence across different species and isoforms. In this study, we carried out molecular dynamics simulation of the structure of the $HIF1{\alpha}$ CODD motif in complex with the p53 DNA-binding domain (DBD). The structure reveals specific functional roles of highly conserved residues in the CODD sequence motif of $HIF1{\alpha}$ for the recognition of p53.

광 경화성 단분자를 이용한 수직 배향 액정 표시 소자의 노광 조건에 따른 표면 안정화의 연구

  • Kim, Hye-Yeong;Kim, Dae-Hyeon;Gwon, Dong-Won;Kim, U-Il;Jo, In-Yeong;Kim, Seong-Min;Lee, Seung-Hui;Jeong, Yeon-Hak;Ryu, Jae-Jin
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 2009.11a
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    • pp.187-187
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    • 2009
  • The PVA(patterned vertical alignment) mode has a excellent dark state at normal direction. but they has a disclination area at divided domain region at voltage on state. so this disclination make a slow response time and decrease transmittance. To overcome this problem, we research about polymer stabilized vertical alignment (PS-VA) method which was using the UV curable reactive mesogen. According to our research, UV exposure condition which was UV dosage condition effected to rising time and decay time and also threshold voltage.

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