• Title/Summary/Keyword: Differential analysis

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A Report on the Inter-Gene Correlations in cDNA Microarray Data Sets (cDNA 마이크로어레이에서 유전자간 상관 관계에 대한 보고)

  • Kim, Byung-Soo;Jang, Jee-Sun;Kim, Sang-Cheol;Lim, Jo-Han
    • The Korean Journal of Applied Statistics
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    • v.22 no.3
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    • pp.617-626
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    • 2009
  • A series of recent papers reported that the inter-gene correlations in Affymetrix microarray data sets were strong and long-ranged, and the assumption of independence or weak dependence among gene expression signals which was often employed without justification was in conflict with actual data. Qui et al. (2005) indicated that applying the nonparametric empirical Bayes method in which test statistics were pooled across genes for performing the statistical inference resulted in the large variance of the number of differentially expressed genes. Qui et al. (2005) attributed this effect to strong and long-ranged inter-gene correlations. Klebanov and Yakovlev (2007) demonstrated that the inter-gene correlations provided a rich source of information rather than being a nuisance in the statistical analysis and they developed, by transforming the original gene expression sequence, a sequence of independent random variables which they referred to as a ${\delta}$-sequence. We note in this report using two cDNA microarray data sets experimented in this country that the strong and long-ranged inter-gene correlations were still valid in cDNA microarray data and also the ${\delta}$-sequence of independence could be derived from the cDNA microarray data. This note suggests that the inter-gene correlations be considered in the future analysis of the cDNA microarray data sets.

Molecular Taxonomy based on 16S rDNA Analysis and Pathogenicity of Yersinia pseudotuberculosis Isolated from Spring Waters (약수에서 분리한 Yersinia pseudotuberculosis의 병원성과 16S rDNA 분석에 의한 분자학적 분류)

  • Lee, Young-Kee;Choi, Sung-Min;Oh, Soo-Kyung;Lee, Kang-Moon;Ryeom, Kon
    • Korean Journal of Microbiology
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    • v.37 no.1
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    • pp.9-14
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    • 2001
  • In order to investigate the pathogenicity and development of differential identification technique in the Yersinia species and other entericbacteria, we isolated 5 strains of Y.pseudotuberculosis from spring water sites in Seoul. The biochemical characteristics of isolated strains revealed that indole, VP($25^{\circ}C$, $37^{\circ}C$), $H_2S$, phenylalanine, lysine, arginine, ornithine, gas from glucose, lactose, sucrose, sorbitol, oxidase and motility($37^{\circ}C$) were all negative and urease, glucose, mannitol, salicin, catalase and motility($25^{\circ}C$) were all positive. To detect the causative agent of pseudotuberculosis(Y.pseudotuberculosis), we carried out a study using a PCR with inv primers complementary to the pathogenic region and found that all strains were positive, this revealed that strains from spring waters were pathogenic. Also 16S rDNA for total 5 strains of Y. pseudotuberculosis were amplified and a stretch of approximately 1,450 nucleotides were sequenced and analyzed. The 16S rDNA nucleotide sequence homologies among Yersinia species ranged 97.5% to 100% and between Y.pseudotuberculosis and other entericbacteria they ranged 93.0% to 95.1%. The Phylogenetic tree generated from the sequence analysis of the 16S rDNA gene showed 3 coherent clusters that could be separated into Y.pseudotuberculsis strains, some Yersinia species strains and other entericbacteria strains.

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Comparison of mice gut microbiota before and after fasting for a day (절식이 마우스 장내미생물에 미치는 영향)

  • Hong, Jiwan;Jo, Hyejun;Unno, Tatsuya
    • Journal of Applied Biological Chemistry
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    • v.62 no.4
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    • pp.333-337
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    • 2019
  • In this study, we investigated the effects of fasting on gut microbiota of mice fed normal (CTL) or high-fat diets (HF). Mice were raised for 16 weeks and fasted for a day at the end of the experiment. Fecal samples were collected one day before and after fasting, which were analyzed using MiSeq. Our results showed that the species richness and evenness were decreased in fasted HF group, whereas no difference was observed for CTL groups. Moreover, HF fed mice gut microbiota showed different microbial communities after fasting, while CTL groups did not show microbiota shifts. Differential abundance analysis showed that fasting CTL group mice increased and decreased one operational taxonomic unit (OTU) in S24_7 and one OTU in Ruminococcaceae, respectively. On the other hand, fasting HF group mice decreased 10 OTUs and increased 3 OTUs most of which were classified to Ruminococcaceae. Our results suggest that fasting mice may affect the abundance of Ruminococcaceae species and effects of fasting seem to be more obvious for HF-fed mice compared to those of mice fed CTL-diet.

Second Order Nonlinear Optical Polyimides Containing Organic Chromophores with an Oxadiazole Segment (옥사디아졸 결합의 유기 발색단이 도입된 이차비선형 광학 이미드 고분자)

  • Do, Jung Yun;Kim, Bong Gun;Kwon, Ji-Yun
    • Applied Chemistry for Engineering
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    • v.18 no.1
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    • pp.77-83
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    • 2007
  • It is essential that second order nonlinear optical materials have low optical propagation losses in the wavelengths of second harmonic generation for practical applications in waveguides. Three dipolar chromophores substituted with nitro, cyano, and alkyl sulfone as an electron withdrawing group were prepared. The UV-Vis absorption spectra of the cyano and alkylsulfone chromophores showed a blue-shift compared to the nitro chromophore. The introduction of oxadiazole segment in the chromophore structure led to similar spectral shift. The blue-shift can produce low optical loses at second harmonics. The chromophores were successfully attached to a polyimide, yielding side chain polymers. The nonlinear optical property of the prepared optical polymers was determined by measuring electro-optic coefficient at 1.55 mm. The polymers exhibited high glass transition temperature of over $185^{\circ}C$ and thermal stability to $300^{\circ}C$ through differential scanning calorimeter analysis and thermal gravimetric analysis.

The Effect of Changes in Medical Use by Changing Copayment of Elderly (의원급 노인 외래 정률차등정책 효과분석)

  • Na, Young-Kyoon
    • Health Policy and Management
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    • v.30 no.2
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    • pp.185-191
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    • 2020
  • Background: From January 2018, a policy was applied to differentially apply the co-payment for medical expenses of 15,000 won or more from 30% to 10%-30% for each medical fee. This policy lowers the burden on the medical use of the elderly, and it is necessary to analyze the effect of the policy by confirming changes in medical use and supply behavior after 2 years. Methods: The National Health Insurance Service's national medical use database was used. As for the analysis method, first, the medical use and medical supply behavior change over the age of 65 years were confirmed, and second, in order to check the net effect of the policy, the 66-year-old as the experimental group and the 63-year-old as the control group were selected as the control group. The propensity score matching was performed using the variables of age, living alone, income quartile, residence, disability, chronic disease, and co-morbid disease scores, and then it was analyzed using the difference in difference analysis method. Results: The share of the number of treatments under 15,000 won decreased from 37.0% in 2017 to 20.2% in 2018, while the share of the number of treatments under 15,001-20,000 won increased from 8.0% to 22.7%. It was confirmed that the reason for the increase in the cost of treatment per treatment was the result of the increase in the amount of physical therapy and examination. As a result of the policy effect, the burden of co-payment per person was reduced, and as a result, the number of hospital visits per person and the total medical cost per person increased. Conclusion: The self-pay rate differential policy reduced the burden of medical expenses for the elderly and confirmed the increase in medical use. However, the interpretation of the increase in medical use was not able to distinguish whether the unsatisfactory medical care was satisfied or the inducement demand. Efficient allocation of resources is a more important point in the future when the super-aged society is in front. It is necessary to prepare a plan to induce rational medical use within a range that does not impair the medical accessibility of the elderly.

Noisy OTDR Data Event Detection Analysis for the Real Time Optical Fiber Link Monitoring (실시간 광선로망 감시를 위한 Noisy OTDR 신호 분석 방법)

  • Ko, Dae-Young;Baek, Sung-June;Park, Aaron;Kim, Jin-Bong;Nah, Yong-Su
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.17 no.4
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    • pp.122-128
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    • 2016
  • This paper, proposes a new analysis method for the event detection of an OTDR signal. An OTDR signal was passed through the Hamming filter to remove the high frequency noise included in the signal. The signal was then passed consecutively through a differential filter to detect the events of interest. The terminal position was determined using the fact that there is a large gap between the signal and the trailing noise power beyond the terminal. This study examined the local maxima of the signal up to the terminal position and determined the peak regions. The real events were determined from the peak regions using noise information and peak threshold. Finally, the user events were found by inspecting the user peaks beyond the terminal position. The events of the OTDR signal without users are located at less than 17m compared to the optical fiber link setup. The events of the JDSU device are located less than 25m and their users are less than 5m. For the RadianTech device, the events are detected at less than 19m and the users are found in 5m. The results suggest that the proposed method is sufficiently applicable to an optical fiber link monitoring system.

Soil Characteristics according to the Geological Condition of Natural Slopes in Busan Area (부산지역 자연사면의 지질조건에 따른 토질특성)

  • Kim, Kyeong-Su
    • The Journal of Engineering Geology
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    • v.17 no.3
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    • pp.471-481
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    • 2007
  • The Landslide in natural slope is occurred mostly by a heavy rain of the summer. This landslide is influenced in soil property of the surface than the rock mass. Soils in natural slope are created by weathering phenomena of the bedrock. These soils differed to the geological conditions such as sedimentary rock, metamorphic rock and volcanic rock. Therefore, estimation of landslide in natural slope is the most important analysis of the bedrock distributions and soil characteristics. This study analyzed the soil property to the natural slopes of Busan area where is distributed to volcanic rock, granite and sedimentary rock. Soil sample conducted various soil tests for estimate the soil physical property and soil engineering characteristics, and analysis of the correlation of geological conditions. In the experiment result, soils were mainly classified by a clayey sand. It is also established that $1.07{\sim}1.99kg/cm^3$ for wet density, $28.2{\sim}39.6^{\circ}$ for angle of shearing resistance, and $8.10{\times}10^{-5}{\sim}8.38{\times}10^{-2}cm/sec$ for coefficient of permeability. From the physical parameter, the soils are estimated to the permeable ground with good shear strength, and soil properties are showed a differential tendency for each geological condition.

Determinants of Customer Loyalty in the Context of Online Shopping: A Comparative Analysis of Internet Shopping and Mobile Shopping (온라인 쇼핑 상황에서 고객충성도의 결정요인: 인터넷 쇼핑과 모바일 쇼핑의 비교 분석)

  • Koh, Joon;Choi, Sujeong;An, Baicheng
    • The Journal of the Korea Contents Association
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    • v.15 no.11
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    • pp.486-500
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    • 2015
  • This study focuses on customer loyalty that explains how firms can maintain long-term relationship with customers, in the internet shopping and mobile shopping contexts. Specifically, this study examines the key determinants of customer loyalty from two perspectives: service quality and shopping value. Concerning service quality, previous studies have long argued that it is a starting point of building customer loyalty. Shopping value is a key variable in capturing consumers' shopping motives. In this study, we consider two types of shopping value: usefulness as utilitarian value and enjoyment as hedonic value. Moreover, this study examines whether the effects of service quality and shopping value on customer loyalty differ depending on internet and mobile shopping groups. To test the proposed hypotheses, we conducted multiple linear regression analysis and chow test with a total of 199 data collected on users who have experience in internet shopping and mobile shopping. The key findings are as follows: First, in the internet shopping group, customer loyalty depends on service quality (responsiveness and empathy) and usefulness, whereas in the mobile shopping, it only depends on enjoyment. Second, the impacts of service quality and shopping value on customer loyalty are different depending on internet shopping and mobile shopping. The results imply that e-tailors should develop differential methods suitable for internet shopping or mobile shopping to enhance customer loyalty.

A Study on the Expansion Joint of Concrete Lining and Duct in a Tunnel (터널 콘크리트 라이닝 및 공동구 신축이음 설치방안에 관한 연구)

  • Son, Moorak;Park, Yangheum;Park, Yunjae;Kim, Jaegyoun;Yoon, Jongcheol
    • Journal of the Korean Geotechnical Society
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    • v.31 no.3
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    • pp.39-50
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    • 2015
  • The installation of the expansion joints in a tunnel concrete lining and duct would minimize the cracking at the location of structural shape and stiffness change, differential settlement, big temperature change, and so on. However, it is difficult to determine the required spacing of the expansion joint in a tunnel concrete lining and duct quantitatively because the spacing is influenced by temperature change, structure construction condition, ground-structure interaction, and etc. Nevertheless, a highway specification (Korea Expressway Corporation, 2012) or a road design manual (Ministry of Land, Transport and Maritime Affairs, 2010) specifies that the expansion joint spacing in a tunnel concrete lining should be installed uniformly smaller than 25 m from the tunnel portals to 50 m inside of a tunnel and elsewhre 20-60 m in a tunnel (because there is no specifcation for a duct it is assumed that a duct follows the specfication of lining). This specification results in several construction and economic problems in relation with a tunnel construction. Accordingly, in order to minimize the problems, this study analyzed both domestic and foreign design standards and specifications. In addition, field test, theoretical and numerical analyses were carried out in relation to the expansion joint in a tunnel lining and duct. The purpose of this study is to reestabilish a criterion for installing the expansion joint in a tunnel concrete lining and duct.

A Study on Shape Optimization of Distributed Actuators using Time Domain Finite Element Method (시간유한요소법을 이용한 분포형 구동기의 형상최적화에 관한 연구)

  • Suk, Jin-Young;Kim, You-Dan
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.33 no.9
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    • pp.56-65
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    • 2005
  • A dynamic analysis method that freezes a time domain by discretization and solves the spatial propagation equation has a unique feature that provides a degree of freedom on spatial domain compared with the space discretization or space-time discretization finite element method. Using this feature, the time finite element analysis can be effectively applied to optimize the spatial characteristics of distributed type actuators. In this research, the time domain finite element method was used to discretize the model. A state variable vector was used in the discretization to include arbitrary initial conditions. A performance index was proposed on spatial domain to consider both potential and vibrational energy, so that the resulting shape of the distributed actuator was optimized for dynamic control of the structure. It is assumed that the structure satisfies the final rest condition using the realizable control scheme although the initial disturbance can affect the system response. Both equations on states and costates were derived based on the selected performance index and structural model. Ricatti matrix differential equations on state and costate variables were derived by the reconfiguration of the sub-matrices and application of time/space boundary conditions, and finally optimal actuator distribution was obtained. Numerical simulation results validated the proposed actuator shape optimization scheme.