• Title/Summary/Keyword: Difference Vector

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Survey on Nucleotide Encoding Techniques and SVM Kernel Design for Human Splice Site Prediction

  • Bari, A.T.M. Golam;Reaz, Mst. Rokeya;Choi, Ho-Jin;Jeong, Byeong-Soo
    • Interdisciplinary Bio Central
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    • v.4 no.4
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    • pp.14.1-14.6
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    • 2012
  • Splice site prediction in DNA sequence is a basic search problem for finding exon/intron and intron/exon boundaries. Removing introns and then joining the exons together forms the mRNA sequence. These sequences are the input of the translation process. It is a necessary step in the central dogma of molecular biology. The main task of splice site prediction is to find out the exact GT and AG ended sequences. Then it identifies the true and false GT and AG ended sequences among those candidate sequences. In this paper, we survey research works on splice site prediction based on support vector machine (SVM). The basic difference between these research works is nucleotide encoding technique and SVM kernel selection. Some methods encode the DNA sequence in a sparse way whereas others encode in a probabilistic manner. The encoded sequences serve as input of SVM. The task of SVM is to classify them using its learning model. The accuracy of classification largely depends on the proper kernel selection for sequence data as well as a selection of kernel parameter. We observe each encoding technique and classify them according to their similarity. Then we discuss about kernel and their parameter selection. Our survey paper provides a basic understanding of encoding approaches and proper kernel selection of SVM for splice site prediction.

Highly Integrated Low-Power Motion Estimation Processor for Mobile Video Coding Applications (이동통신 향 동영상압축을 위한 고집적 저전력 움직임 추정기)

  • Park Hyun Sang
    • Journal of Broadcast Engineering
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    • v.10 no.1 s.26
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    • pp.77-82
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    • 2005
  • We propose a highly Integrated motion estimation processor (MEP) for efficient video compression in an SoC platform. When compressing video by the standards like MPEG-4 and H.263, the macroblock related functions motion compensation. mode decision, motion vector prediction, and motion vector difference calculation require the frequent intervention of MCU. Thus the proposed MEP incorporates those functions with the motion estimation capability to reduce the number of interrupts to MCU, which can lead to a highly efficient SoC system. For low-power consumption, the proposed MEP can prevent the temporally static area from motion estimation or can skip the half-pel motion estimation for those macroblocks whose modes are decided as INTRA.

Adaptive Tracking Algorithm Based on Direction Field for Automated Identification of Vessel Contour (혈관 윤곽의 자동적 식별을 위한 방향성 기반의 적응적 추적 알고리즘)

  • Park, S.I.;Lee, J.S.;Koo, J.Y.;Hong, S.H.
    • Proceedings of the KOSOMBE Conference
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    • v.1997 no.05
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    • pp.414-417
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    • 1997
  • This paper presents vessel contour for extracting features and segmentating narrow blood vessels down to a diameter of two pixels in digital subtraction angiographic image. We present a new tracking algorithm for contour, mainly blood vessels in DSA image, and extracting properties such as their intensities, diameters, and center lines by exploiting spatial continuity. The proposed algorithm comes to detect blood vessel's boundary using difference edge detector one of homogeneity operator and find a next centerline position by direction vector of edge information. This algorithm enhanced variation of vessel's diameter compared to Sun's tracking algorithm and lessoned to compute as direction vector decide adaptively entire vessel's direction field. The processed images are intended to support radiologists in diagnosis, radiation therapy planning, and surgical planning. The algorithm should be useful for automating angiographic analyses of blood vessels.

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Effect of Railway Noise Barrier Shape on Solar Radiation Energy Absorption (철도 방음벽의 형상에 따른 태양복사 에너지 흡수 특성 연구)

  • Jeong, Chan Ho;Lee, Jin Woon;Jang, Yong-Jun;Kim, Jooheon;Ryou, Hong Sun;Lee, Seong Hyuk
    • Journal of ILASS-Korea
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    • v.18 no.4
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    • pp.209-214
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    • 2013
  • The present study aims to determine the optimized shape for the maximum electric energy production of building integrated photovoltaic system (BIPV) noise barrier through numerical analysis. The shape of BIPV noise barrier is one of the important factors in determining angle difference between direction vector of the sun and normal vector of the sound barrier surface. This study simulated numerically the flow and thermal fields for different angles in the range from $90^{\circ}$ to $180^{\circ}$, and from the results, the amount of isolation onto noise barrier surface was estimated along the angle between ground and top side of noise barrier. The commercial CFD code (Fluent V. 13.0) was used for calculation. It was found that the maximum amount of insolation per unit area was 19.6 MJ for $105^{\circ}$ case during a day in summer and was estimated 12.4 MJ in $150^{\circ}$ case during a day in winter. The results of the summer and winter cases showed the different tendency and this result would be useful in determining the appropriate shape of noise barrier which can be mounted under various circumstances.

Adaptive Motion Vector Estimation Using the Regional Feature (영역별 특성을 이용한 적응적 움직임 벡터 추정 기법)

  • Park, Tae-Hee;Lee, Dong-Wook;Kim, Jae-Min;Kim, Young-Tae
    • Proceedings of the KIEE Conference
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    • 1995.11a
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    • pp.502-504
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    • 1995
  • In video image compression, it is important to extract the exact notion information from image sequence in order to perform the data compression, the field rate conversion, and the motion compensated interpolation effectively. It is well known that the location of the smallest sum of absolute difference(SAD) does not always give the true motion vector(MV) since the MV obtained via full block search is often corrupted by noise. In this paper, we first classifies the input blocks into 3 categories : the background, the shade-motion, and the edge-motion. According to the characteristics of the classified blocks, multiple locations of relatively small SAD are searched with an adaptive search window by using the proposed method. The proposed method picks MVs among those candidates by using temporal correlation. Since temporal correlation reveals the noise level in a particular region of the video image sequence, we are able to reduce the search are very effectively.

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Competition between Online Stock Message Boards in Predictive Power: Focused on Multiple Online Stock Message Boards

  • Kim, Hyun Mo;Park, Jae Hong
    • Asia pacific journal of information systems
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    • v.26 no.4
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    • pp.526-541
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    • 2016
  • This research aims to examine the predictive power of multiple online stock message boards, namely, NAVER Finance and PAXNET, which are the most popular stock message boards in South Korea, in stock market activities. If predictive power exists, we then compare the predictive power of multiple online stock message boards. To accomplish the research purpose, we constructed a panel data set with close price, volatility, Spell out acronyms at first mention.PER, and number of posts in 40 companies in three months, and conducted a panel vector auto-regression analysis. The analysis results showed that the number of posts could predict stock market activities. In NAVER Finance, previous number of posts positively influenced volatility on the day. In PAXNET, previous number of posts positively influenced close price, volatility, and PER on the day. Second, we confirmed a difference in the prediction power for stock market activities between multiple online stock message boards. This research is limited by the fact that it only considered 40 companies and three stock market activities. Nevertheless, we found correlation between online stock message board and stock market activities and provided practical implications. We suggest that investors need to focus on specific online message boards to find interesting stock market activities.

Impulse Response of Inflation to Economic Growth Dynamics: VAR Model Analysis

  • DINH, Doan Van
    • The Journal of Asian Finance, Economics and Business
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    • v.7 no.9
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    • pp.219-228
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    • 2020
  • The study investigates the impact of inflation rate on economic growth to find the best-fit model for economic growth in Vietnam. The study applied Vector Autoregressive (VAR), cointegration models, and unit root test for the time-series data from 1996 to 2018 to test the inflation impact on the economic growth in the short and long term. The study showed that the two variables are stationary at lag first difference I(1) with 1%, 5% and 10%; trace test indicates two cointegrating equations at the 0.05 level, the INF does not granger cause GDP, the optimal lag I(1) and the variables are closely related as R2 is 72%. It finds that the VAR model's results are the basis to perform economic growth; besides, the inflation rate is positively related to economic growth. The results support the monetary policy. This study identifies issues for Government to consider: have a comprehensive solution among macroeconomic policies, monetary policy, fiscal policy and other policies to control and maintain the inflation and stimulate growth; set a priority goal for sustainable economic growth; not pursue economic growth by maintaining the inflation rate in the long term, but take appropriate measures to stabilize the inflation at the best-fitted VAR forecast model.

Transgenesis in Fish: Indian Endeavour and Achievement

  • Pandian, T.J
    • Journal of Aquaculture
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    • v.16 no.1
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    • pp.51-58
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    • 2003
  • The first Indian transgenic fish was generated in 1991 using borrowed constructs from foreign sources. To construct transformation vectors for the indigenous fishes, growth hormone genes of rohu (r-CH), Labeo rohita and catfish, Heteropneustes fossilis were isolated, cloned and sequenced; their fidelity was confirmed in prokaryotic and eukaryotic systems. A vector was constructed with grass carp b-actin promoter driving the expression of r-GH. Rohu eggs are large. fragile and swell 2~3 times. when fertilized. Hence they were amenable only for electroporated sperm-mediated gene transfer. Accordingly, the sperm electroporation technique was standardized to ensure 25% hatchling survival and 37% Presumptive transgenics without suffering any deformity. Southern analysis confirmed genomic integration in 15% of the tested individuals (Ti) belonging to family lines 2 and 3: another 25% of the Juveniles (Te) were also proved transgenic but with the transgene persisting extrachromosomally for longer than 1 to 2 years. perhaps due to the presence of replicon in the vector. Transgenics belonging to different family lines grew 6~8 times faster than the respective controls. Difference in growth trends of Ti and Te within a family line was not significant. In the Ti family 3 remarkable growth acceleration was sustained for a period longer than 36 weeks but in those of family 2, it gradually decreased. All transgenic fishes including the rohu converted the food at a significantly higher efficiency. Barring the transgenic mudloach, all the other transgenic fishes consumed food at significantly reduced rate.

Statistical Image Feature Based Block Motion Estimation for Video Sequences (비디오 영상에서 통계적 영상특징에 의한 블록 모션 측정)

  • Bae, Young-Lae;Cho, Dong-Uk;Chun, Byung-Tae
    • The Journal of the Korea Contents Association
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    • v.3 no.1
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    • pp.9-13
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    • 2003
  • We propose a block motion estimation algorithm based on a statistical image feature for video sequences. The statistical feature of the reference block is obtained, then applied to select the candidate starting points (SPs) in the regular starting points pattern (SPP) by comparing the statistical feature of reference block with that of blocks which are spread ower regular SPP. The final SPs are obtained by their Mean Absolute Difference(MAD) value among the candidate SPs. Finally, one of conventional fast search algorithms, such as BRGDS, DS, and three-step search (TSS), has been applied to generate the motion vector of reference block using the final SPs as its starting points. The experimental results showed that the starting points from fine SPs were as dose as to the global minimum as we expected.

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Entropy-Constrained Sample-Adaptive Product Quantizer Design for the High Bit-Rate Quantization (고 전송률 양자화를 위한 엔트로피 제한 표본 적응 프로덕트 양자기 설계)

  • Kim, Dong-Sik
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.49 no.1
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    • pp.11-18
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    • 2012
  • In this paper, an entropy constrained vector quantizer for high bit-rates is proposed. The sample-adaptive product quantizer (SAPQ), which is based on the product codebooks, is employed, and a design algorithm for the entropy constrained sample adaptive product quantizer (ECSAPQ) is proposed. The performance of the proposed ECSAPQ is better than the case of the entropy constrained vector quantizer by 0.5dB. It is also shown that the ECSAPQ distortion curve, which is based on the scalar quantizer, is lower than the high-rate theoretical curve of the entropy constrained scalar quantizer, where the theoretical curve have 1.53dB difference from Shannon's lower bound.