• 식물병연구
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• 제17권1호
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• pp.99-101
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• 2011

자낭균인 Taphrina wiesneri는 한국의 공원과 가로수에 주로 식재되는 왕벚나무에 빗자루병을 일으키는 병원균이다. 한국과 일본에서 분리한 13개의 병원균에 대해 18S rDNA 염기서열 분석을 통한 계통학적 분석과 rDNA-IGS 영역에 대한 RFLP 분석을 실시하였다. 18S rDNA 염기서열 분석을 통한 계통도 분석결과 병원균은 2그룹으로 분류되었다. Hha I 제한효소를 이용한 rDNA-IGS 영역에 대한 RFLP 분석결과 B, C, D, G 4개의 패턴으로 나타났으며, 그중 G 패턴은 새로운 패턴이었다.

• Reproductive and Developmental Biology
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• 제28권1호
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• pp.37-43
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• 2004

본 연구는 319두의 서로 다른 품종에서 PSE육을 생산하는 PSS 돼지 출현빈도를 조사하였다(Yorkshire 150; Landrace 89 and Duroc 80). PCR-RFLP법을 이용하여 돼지의 모근을 DNA sample로 사용하여, PCR로 증폭된 유전자는 Cfo I 제한 효소로 절단하여 종돈에 존재하는 ryanodine receptor (RYR 1) 돌연변이 유전자의 출현빈도를 조사한 결과를 요약하면 다음과 같다. 모근에서 추출한 DNA를 주형으로 한 Primary PCR을 수행한 결과 ryanodine receptor 유전자 중 659bp의 증폭산물을 얻었으며, second PCR을 수행한 결과에서는 522 bp의 증폭산물을 얻었다. 이 증폭산물은 porcine ryanodine receptor 유전자의 exon 영역 중 PSS를 유발하는 point mutation(C\longrightarrowT; Arg\longrightarrowCys) 부분을 포함하고 있으므로 Cfo I 제한효소에 의해 분석될 수 있으며, agarose gel 전기영동에 의하여 세 가지의 유전자형으로 분류할 수 있다. 정상 homotype(NN)은 두 개의 DNA band(439, 83bp)로 나타나며, 열성 homotype(nn)은 552 bp의 단일 밴드로 출현한다. 그리고 세 개의 밴드(522, 439 그리고, 83 bp)는 heterotype(Nn)의 잠재성 돼지로 표현된다. Yorkshire종에서는 정상돼지가 98.00%로 나타났으며, hetero 돼지는 2.00% 그리고, PSS돼지는 출현하지 않았다. Landrace 돼지에서는 정상돼지가 87.64%로 나타났으며, hetero 돼지와 PSS패지가 각각 11.24와 1.12%로 나타났으나, Duroc종에서는 정장돼지(NN)만이 출현하였다. 대립 유전자 빈도는 Yorkshire종은 정상 N유전자가 0.990의 비율로 나타났으며, 열성 n 유전자는 0.010의 비율로 출현하였으며, Landrace종에서는 N유전자와 n유전자가 각각 0.933과 0.067의 빈도로 출현하였으며, Duroc종에서는 N 유전자의 빈도가 1.000의 빈도로 나타났으나, n유전자의 빈도는 0.000의 빈도로 나타났다. 3품종 집단 모두에서 Hardy-Weinberg 법칙과 일치하여 유전적 평형을 이루고 있었다.

• 한국수산과학회지
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• 제28권5호
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• pp.649-658
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• 1995

붕넙치과 어류의 종간에 있어서의 유전적 분화정도를 DNA level에서 관찰하기 위하여 참가자미, 문치가자미, 돌가자미, 강가자미의 미토콘드리아 DNA를 분리하고, 6염기인식의 14제한효소로써 절단한 절단단편의 염기치환수를 계산하였다. 1) mtDNA 총염기대수는 4종 모두 17.6kbp 부근으로 나타나 동일한 염기대수를 가지는 것으로 추정되었다. 2) 14종류의 제한효소로써 절단한 절단단편의 pattern으로 4종의 종내 및 종간의 haplotype수를 조사한 결과, 참가자미에서는 10개, 문치가자미에서는 4개, 강가자미에서는 2개, 돌가자미에서는 1개의 haplotype이 관찰되었으며, 종간에 있어서는 공통적인 haplotype가 전혀 관찰되지 않았다. 3) mtDNA의 유전적 변이성을 나타내는 haplotype 다양도 (h)는 참가자미에서 0.588, 문치가자미에서 0.371로 나타나 참가자미에서 높은 변이성을 나타내었다. 4) 4종의 유전적 분화의 정도를 mtDNA haplotype간의 제한 부위당 염기치환수 (d)로써 살펴 본 결과, 종내의 평균은 0.0045, 종간의 평균은 0.0344, 속간의 평균은 0.0457로 되어 종간, 속간의 값이 종내에 비해 현저하게 높은 수치를 나타내었다. 5) 4종간의 mtDNA haplotype는 1개 또는 2개의 염기치환에 의한 차이가 아니고 유전적 불연속을 나타내었다.

• Journal of Microbiology and Biotechnology
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• 제15권6호
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• pp.1170-1177
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• 2005

Terminal-restriction fragment length polymorphism (T-RFLP) analysis was used to monitor inoculated oil-degrading microorganisms during bioremedial treatability tests. A pair of universal primers, fluorescently labeled 521F and 1392R, was employed to amplify small subunit rDNA in order to simultaneously detect two bacterial strains, Corynebacterium sp. IC10 and Sphingomonas sp. KH3-2, and a yeast strain, Yarrowia lipolytica 180. Digestion of the 5'-end fluorescence/labeled PCR products with HhaI produced specific terminal-restriction fragments (T-RFs) of 185 and 442 bases, corresponding to Corynebacterium sp. IC10 and Y. lipolytica 180, respectively. The enzyme NruI produced a specific T-RF of 338 bases for Sphingomonas sp. KH3-2. The detection limit for oildegrading microorganisms that were inoculated into natural environments was determined to be $0.01\%$ of the total microbial count, regardless of the background environment. When three oil-degrading microorganisms were released into oil-contaminated sand microenvironments, strains IC10 and 180 survived for 35 days after inoculation, whereas strain KH3-2 was detected at 8 days, but not at 35 days. This result implies that T-RFLP could be a useful tool for monitoring the survival and relative abundance of specific microbial strains inoculated into contaminated environments.

• Journal of Microbiology and Biotechnology
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• 제9권3호
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• pp.334-339
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• 1999

More innovative molecular markers were investigated for rapid and consistent differentiation of Metarhizium anisopliae var. majus from M. anisopliae var. anisopliae. A total of 28 isolates were obtained from various countries and hosts: 13 isolates of M. anisopliae var. anisopliae, 12 isolates of M. anisopliae var. majus, and 3 isolates of M. anisopliae collected in Korea. This study involved restriction enzyme digestions of a PCR product amplified from nuclear internally transcribed spacer (ITS) and a portion of the 28S rDNA regions. Among 11 different restriction enzymes used in this study, MboⅠ digestion particularly produced a restriction pattern that had characteristics of M. anisopliae var. majus. This restriction pattern was consistent in all isolates of M. anisopliae var. majus regardless of their geographic origins and insect hosts. Mapping experiments revealed that MboⅠ sites of M. anisopliae var. majus are identical to those of M. anisopliae var. anisopliae with an exception for the presence of an additional site in the PCR product. Results from this study provide an additional method for identification and differentiation of isolates of these two varieties of M. anisopliae for use in the field and laboratory experiments.

• Fisheries and Aquatic Sciences
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• 제11권3호
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• pp.133-139
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• 2008

Molecular techniques, including restriction fragment length polymorphism(RFLP) and polymerase chain reaction-single strand conformational polymorph isms(PCR-SSCP), were developed to identify salted, dried threadfin(Eleutheronema tetradactylum) and white herring(Ilisha elongata) fish. Using PCR with universal primers, conserved 367-bp fragments of the cytochrome b gene were amplified from fresh fish samples and sequenced. The sequences were then searched for specific restriction sites. The digestion of the PCR products with the endonucleases AvaI, FokI, MboII, and MspI generated RFLP, which was used to identify the commercial products. Similarly, the amplified PCR-SSCP products were developed and the products tested. Overall, similar patterns were found in the majority of the fresh and processed products. Based on the results, both RFLP and PCR-SSCP were useful in determining and validating the authenticity of the fish species used to prepare the commercial salted, dried products. A similar approach can be applied to other species.

• 한국미생물·생명공학회지
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• 제22권5호
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• pp.485-490
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• 1994

A restriction endonuclease, PsyI, has been isolated from Pseudomonas syringae pv. pha- seolicola, and its catalytic properties have been studied. This enzyme was purified through strepto- mycin sulfate and ammonium sulfate fractionation, phosphocellulose Pll, DEAE-cellulose, hydroxy- apatite and Sephadex G-100 column chromatography. It's molecular weight was about 50,000 dalton as determined by 7.5% polyacrylamide gel electrophoresis containing 0.1% SDS. In catalytic proper- ties, PsyI shows stable at wide ranges of pH between 7.0 and 10.0, of temperature between 30$\circ$C and 37$\circ$C, and its thermal stability is between 25$\circ$C, and 45$\circ$C, at the presence Of 10 mM MgCl$_{2}$-PsyI essentially require Na salt for enzyme reaction, is rather inhibited in the high Na salt concent- ration. The presence of 2-mercaptoethanol is absolutely required for the enzyme activity. This endonuclease, PsyI was determined to be an isoschizomer of SalI from the results of the restriction mapping and DNA sequencing.

• The Plant Pathology Journal
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• 제18권1호
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• pp.1-5
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• 2002

The availability of nucleotide sequences of the coat protein gene of Potato leafroll virus (PLRV) permitted the construction of DNA primers that were utilized for cDNA synthesis. Polymerase chain reaction (PCR) products of a 487 bp. and approximately 500 bp DNA fragments were amplified from nucleic acid extracts of PLRV-infected tissue and strawberry mild yellow-edge (SMYE) diseased strawberry tissue, respectively. The amplified DNA fragments were further differentiated by hybridization analysis with a CDNA probe for the coat protein gene of PLRV and restriction fragment length polymorphism (RFLP) analysis. These results suggest that a luteovirus is associated with the SMYE disease.

• BMB Reports
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• 제36권3호
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• pp.305-311
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• 2003

A modified actinomycin D was prepared with a hydroxyl group that replaced the amino group at the chromophore 2-position, a substitution known to strongly reduce affinity for double-stranded DNA. Interactions of the modified drug on single-stranded DNAs of the defined sequence were investigated. Competition assays showed that 2-hydroxyactinomycin D has low affinity for two oligonucleotides that have high affinities ($K_a\;=\;5-10{\times}10^6\;M^{-1}$ oligomer) for 7-aminoactinomycin D and actinomycin D. Primer extension inhibition assays performed on several single-stranded DNA templates totaling around 1000 nt in length detected a single high affinity site for 2-hydroxyactinomycin D, while many high affinity binding sites of unmodified actinomycin D were found on the same templates. The sequence selectivity of 2-hydroxyactinomycin D binding is unusually high and approximates the selectivity of restriction endonucleases. Binding appears to require a complex structure, including residues well removed from the polymerase pause site.

• 한국환경성돌연변이발암원학회지
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• 제16권2호
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• pp.77-82
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• 1996

The RAD3 gene of Saccharomyces cerevisiae is required for excision repair and is essential for cell viability. RAD3 encoded protein possesses a single stranded DNA-dependent ATPase and DNA-RNA helicase activies. To examine the extent of conservation of structure and function of RAD3 during eukaryotic evolution, we have cloned the RAD3 homolog, HRD3, from the distantly related yeast Schizosaccharomyces pombe. Here, we report the partial cloning and characterization of HRD3 gene (Homologous of RAD3 gene) which was isolated by PCR amplification using conserved domain of Saccharomyces cerevisiae RAD3 gene. Chromosomal DNA isolated from S. pombe had similar restriction patterns to those from S. cerevisiae, as determined by Southern blot analysis. The 2. 8 kb transcript of mRNA was identified by Northern hybridization. The level of transcript did not increase upon UV-irradiation, suggesting that the HRD3 gene in S. pombe is not UV-inducible.