• Title/Summary/Keyword: DECAY CONSTANT

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Crosstalk between RNA silencing and RNA quality control in plants

  • Yun Ju Kim
    • BMB Reports
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    • v.56 no.6
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    • pp.321-325
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    • 2023
  • RNAs are pivotal molecules acting as messengers of genetic information and regulatory molecules for cellular development and survival. From birth to death, RNAs face constant cellular decision for the precise control of cellular function and activity. Most eukaryotic cells employ conserved machineries for RNA decay including RNA silencing and RNA quality control (RQC). In plants, RQC monitors endogenous RNAs and degrades aberrant and dysfunctional species, whereas RNA silencing promotes RNA degradation to repress the expression of selected endogenous RNAs or exogenous RNA derived from transgenes and virus. Interestingly, emerging evidences have indicated that RQC and RNA silencing interact with each by sharing target RNAs and regulatory components. Such interaction should be tightly organized for proper cellular survival. However, it is still elusive that how each machinery specifically recognizes target RNAs. In this review, we summarize recent advances on RNA silencing and RQC pathway and discuss potential mechanisms underlying the interaction between the two machineries.

Modeling a Radon Environment System with Dose Sensitivity to the Controllable Parameters (라돈 환경계통의 제어 매개변수 모델링)

  • Zoo, Oon-Pyo;Kim, Kem-Joong;Chang, Si-Young
    • Proceedings of the KIEE Conference
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    • 1991.07a
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    • pp.753-756
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    • 1991
  • This paper aimed to analyse dose sensitivity to the controllable parameters of in-door radon $(^{222}Rn)$ and its decay products(Rn-D) by applying the input-output linear system theory. Physical behaviors of $^{222}Rn$ & Rn-D were analyzed in terms of $^{222}Rn$ gas generation, -migation and - infiltration to indoor environments, and the performance output-function(i.e. mean dose equivalent to Tracho-Bronchial(TB) lung region was assessed to the following ranges of the controllable parameters; a) the ventilation rate constant $({\lambda}_v)$ : $0{\sun}500[h^{-1}]$. b) the attachment rate constant$({\lambda}_a)$ : 0-500 $[h^{-1}]$. c) deposition rate constant $({\lambda}{_{d}^{u}})$: 0-50$[h^{-1}]$. A linear input-output model was reconstructed from the original models in literatures, as follows, which was modified into the matrices consisting of 111 nodal equations. a) indoor ${222}Rn$ & Rn-D Behaviour: jacobi- Porstendorfer- Bruno model. b) lung dosimerty : Jacobi-Eisfeld model. Some of the major findings, which identify the effectiveness of this model, were as follows. a) ${\lambda}_v$ is most effective, dominant controllable parameters in dose reduction, if mechanical ventilation is applied. b) ${\lambda}_v$, depending on the air particle-concentration, reduces the dose somewhat within ${\lambda}_v$<1 $h^{-1}R range. However, the dose increases conversely, ${\lambda}_v$>1 $h^{-1}R range range. c) ${\lambda}{_{d}^{4}}$ reduces the dose linearly as ${\lambda}_v$ dose. Such dose(z-axis) sentivities are shown with three-dimensional plots whoes x,y-axes are combined 2out the 3 parameter${\lambda}_v{\lambda}_s,\;{\lambda}_d^s$.

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Characterization of Indoor Air Quality Using multiple Measurements of Nitrogen Dioxide and Volatile Organic Compounds

  • Son, Bu-Soon;Yang, Won-Ho;Sohn, Jong-Ryeal;Kim, Dae-Won;Jung, Soon-Won;Kim, Young-Hee
    • Proceedings of the Korean Environmental Health Society Conference
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    • 2005.06a
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    • pp.293-298
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    • 2005
  • Indoor air quality can be affected by indoor sources, ventilation, decay and outdoor levels. Although technologies exist to measure these factors, direct measurements are often difficult. The purpose of this study was to develop an alternative method to characterize indoor environmental factors by multiple indoor and outdoor measurements. Indoor and outdoor NO$_2$ and VOCs(benzene, toluene, xylene) concentrations were measured every 3 days for 60 consecutive days in 30 houses in Seoul, Asan and Daegu, Korea. Using a mass balance model and regression analysis, penetration factor (ventilation rate divided by the sum of ventilation rate and deposition constant) and source strength factor (source strength divided by the sum of ventilation rate and deposition constant) were calculated using multiple indoor and outdoor measurements. Subsequently, NO$_2$ and VOCs source strengths (ppb/hr) and deposition constant (K, hr$^{-1}$) were estimated. Deposition constants of NO$_2$, toluene and xylene were 0.98 ${\pm}$ 0.28, 0.71 ${\pm}$ 0.24 and 0.74 ${\pm}$ 0.53 hr$^{-1}$, respectively. Source strengths of NO$_2$, toluene and xylene were 16.28 ${\pm}$ 7.47,31.25 ${\pm}$ 38.45 and 23.45 ${\pm}$ 19.67 ppb/hr, respectively In conclusion, indoor environmental factors were effectively characterized by this method using multiple indoor and outdoor measurements.

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Estimation of the methane generation rate constant using a large-scale respirometer at a landfill site

  • Park, Jin-Kyu;Tameda, Kazuo;Higuchi, Sotaro;Lee, Nam-Hoon
    • Environmental Engineering Research
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    • v.22 no.4
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    • pp.339-346
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    • 2017
  • The objective of this study is the evaluation of the performance of a large-scale respirometer (LSR) of 17.7 L in the determination of the methane generation rate constant (k) values. To achieve this objective, a comparison between anaerobic (GB21) and LSR tests was conducted. The data were modeled using a linear function, and the resulting correlation coefficient ($R^2$) of the linear regression is 0.91. This result shows that despite the aerobic conditions, the biodegradability values that were obtained from the LSR test produced results that are similar to those from the GB21 test. In this respect, the LSR test can be an indicator of the anaerobic biodegradability for landfill waste. In addition, the results show the high repeatability of the tests with an average coefficient of variance (CV) that is lower than 10%; furthermore, the CV for the LSR is lower than that of the GB21, which indicates that the LSR-test method could provide a better representation of waste samples. Therefore, the LSR method allows for both the prediction of the long-term biodegradation potential in a shorter length of time and the reduction of the sampling errors that are caused by the heterogeneity of waste samples. The k values are $0.156y^{-1}$ and $0.127y^{-1}$ for the cumulative biogas production (GB21) and the cumulative oxygen uptake for the LSR, respectively.

Effects of frequency ratio on bridge aerodynamics determined by free-decay sectional model tests

  • Qin, X.R.;Kwok, K.C.S.;Fok, C.H.;Hitchcock, P.A.
    • Wind and Structures
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    • v.12 no.5
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    • pp.413-424
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    • 2009
  • A series of wind tunnel free-decay sectional model dynamic tests were conducted to examine the effects of torsional-to-vertical natural frequency ratio of 2DOF bridge dynamic systems on the aerodynamic and dynamic properties of bridge decks. The natural frequency ratios tested were around 2.2:1 and 1.2:1 respectively, with the fundamental vertical natural frequency of the system held constant for all the tests. Three 2.9 m long twin-deck bridge sectional models, with a zero, 16% (intermediate gap) and 35% (large gap) gap-to-width ratio, respectively, were tested to determine whether the effects of frequency ratio are dependent on bridge deck cross-section shapes. The results of wind tunnel tests suggest that for the model with a zero gap-width, a model to approximate a thin flat plate, the flutter derivatives, and consequently the aerodynamic forces, are relatively independent of the torsional-to-vertical frequency ratio for a relatively large range of reduced wind velocities, while for the models with an intermediate gap-width (around 16%) and a large gap-width (around 35%), some of the flutter derivatives, and therefore the aerodynamic forces, are evidently dependent on the frequency ratio for most of the tested reduced velocities. A comparison of the modal damping ratios also suggests that the torsional damping ratio is much more sensitive to the frequency ratio, especially for the two models with nonzero gap (16% and 35% gap-width). The test results clearly show that the effects of the frequency ratio on the flutter derivatives and the aerodynamic forces were dependent on the aerodynamic cross-section shape of the bridge deck.

Inhibitory and Excitatory Postsynaptic Currents of Medial Vestibular Nucleus Neurons of Rats

  • Chun, Sang-Woo;Choi, Jeong-Hee;Park, Byung-Rim
    • The Korean Journal of Physiology and Pharmacology
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    • v.7 no.2
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    • pp.59-63
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    • 2003
  • The medial vestibular nucleus (MVN) neurons are controlled by excitatory synaptic transmission from the vestibular afferent and commissural projections, and by inhibitory transmission from interneurons. Spontaneous synaptic currents of MVN neurons were studied using whole cell patch clamp recording in slices prepared from 13- to 17-day-old rats. The spontaneous inhibitory postsynaptic currents (sIPSCs) were significantly reduced by the $GABA_A$ antagonist bicuculline ($20{\mu}M$), but were not affected by the glycine antagonist strychnine ($1{\mu}M$). The frequency, amplitude, and decay time constant of sIPSCs were $4.3{\pm}0.9$ Hz, $18.1{\pm}2.0$ pA, and $8.9{\pm}0.4$ ms, respectively. Spontaneous excitatory postsynaptic currents (sEPSCs) were mediated by non-NMDA and NMDA receptors. The specific AMPA receptor antagonist GYKI-52466 ($50{\mu}M$) completely blocked the non-NMDA mediated sEPSCs, indicating that they are mediated by an AMPA-preferring receptor. The AMPA mediated sEPSCs were characterized by low frequency ($1.5{\pm}0.4$ Hz), small amplitude ($13.9{\pm}1.9$ pA), and rapid decay kinetics ($2.8{\pm}0.2$ ms). The majority (15/21) displayed linear I-V relationships, suggesting the presence of GluR2-containing AMPA receptors. Only 35% of recorded MVN neurons showed NMDA mediated currents, which were characterized by small amplitude and low frequency. These results suggest that the MVN neurons receive excitatory inputs mediated by AMPA, but not kainate, and NMDA receptors, and inhibitory transmission mediated by $GABA_A$ receptors in neonatal rats.

Modal Analysis of the Vector Triggering Random Decrement Function (벡터 트리거조건에 의한 Random Decrement 함수의 모우드 해석)

  • 정범석;이외득
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.15 no.2
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    • pp.209-218
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    • 2002
  • The Vector Random Decrement technique has been developed as an efficient method for transforming ambient responses into free decays of linear structures. It is shown that the VRD functions nay contain as much information about the modes as the really measured free decay responses. In this paper, the theory of the VRD technique is extended by applying the concept of the mode shape ratio into the Ibrahim Time Domain modal parameter identification algorithm. The VRD function is not shifted in the correction procedures for constant time shifts of the proposed VRD technique. Thus, a number of points equal to the largest of the time shifts used in the vector triggering condition are not deleted. In the VRD functions, any influence of the input to the system is averaged out. The proposed technique is compared with the traditional VRD technique by assessment of the modal parameters. The applicability of the VRD technique has been justified through a simulation study and a study of the response of a laboratory beam model subject to ambient loads.

A Method for Determining Dead Times of a G.M. Defector as a Function of the Count Rate

  • Ro, Seung-Gy
    • Nuclear Engineering and Technology
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    • v.3 no.1
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    • pp.3-7
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    • 1971
  • A method for determining dead times of a G.M. detector as a function of the count rate has been investigated using the Mn$^{56}$ radioactive sample. The formula, (equation omitted), seems to be useful for determining a relation between the dead time and the count rate. Here (equation omitted)(N$_1$) is the dead time for the count rate N$_1$, N$_1$is the count rate at time zero, Nt is the count rate at time t, λ is the radioactive decay constant of the sample used, and t is the time between the first and second runs. When all the counting data were corrected for the dead times evaluated with this formula and then a variation of these corrected counting data with rime was observed, the results showed quite a good agreement with the published data for the radioactive decay of Mn$^{56}$ . Besides, it appears that the dead time decreases as the count rate increases in a dead time-to-count rate relation obtained by the same formula.

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Losses of Biomass and Mineral Nutrients during Decomposition of Herbaceous Plants in Riverine Wetlands

  • Kim, Sa-Rin;Kim, Jae-Geun;Ju, Eun-Jeong;Lee, Yang-Woo;Lee, Bo-Ah;Kim, Heung-Tae;Nam, Jong-Min
    • Journal of Ecology and Environment
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    • v.29 no.5
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    • pp.469-478
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    • 2006
  • The composition changes of litters were investigated to figure out the effects of the decomposition of Humulus japonicus on nutrient circulation and decomposition process in the riverine wetlands: Tan stream and Amsa-dong. Litterbags (mesh size 1 mm and 5 mm) were installed to monitor mass and nutrient changes of 5 types of litters: H. japanicus only, Miscanthus sacchariflarus only, Phragmites communis only, mixed litters including H. japonicus, and mixed litters without H. japonicus for 7 months. It was shown that k (decay rate) of the H. japanicus ($2.68{\sim}3.12$) was higher than that of M. sacchariflorus ($1.83{\sim}2.16$) and P. communis ($0.02{\sim}1.18$). The mass and organic remainings of the mixed litters including H. japonicus at Tan stream were $47.0{\sim}55.1%\;and\;47.0{\sim}54.9%$ and those of the litterbags without H. japanicus were $49.2{\sim}65.4%\;and\;47.1{\sim}57.5%$, respectively. This result indicated that the nutrient circulation was faster at H. japanicus community than others. Ca, Na, Mg, K, P, C, N and H contents reduced to around $40{\sim}80%$ of original. However, Na concentration increased up to $407{\sim}584%$ at 100 days and decreased to $248{\sim}498%$ at the end of the experiment. Decomposition rates were similar between 1 mm and 5mm mesh size litterbags and this implies that plant litters in studied areas decomposed mainly by microbes rather than small animals. This study revealed that the fast growth of H. japonicus was resulted from fast decomposition in part: positive feedback of nutrient cycling.

Simultaneous Removal of Cadmium and Copper from a Binary Solution by Cathodic Deposition Using a Spiral-Wound Woven Wire Meshes Packed Bed Rotating Cylinder Electrode

  • Al-Saady, Fouad A.A.;Abbar, Ali H.
    • Journal of Electrochemical Science and Technology
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    • v.12 no.1
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    • pp.58-66
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    • 2021
  • Spiral-wound woven wire meshes packed bed rotating cylinder electrode was used for the simultaneous removal of cadmium (Cd) and copper (Cu) from a binary solution. The effects of weight percent of each metal on the removal and current efficiencies were studied at an operating current of 345A, while the effect of current on the removal efficiency of both metals was investigated at three levels of current (240, 345.and 400 mA). The experiments were carried out at constant rotation speed 800 rpm, pH = 3, and a total concentration of metals (500 ppm). The results showed that the removal efficiency of copper increased from 89% to 99.4% as its weight percent increased from 20% to100%. In a similar fashion, the removal efficiency of cadmium increased from 81% to 97% as its weight percent increased from 20% to100%. The results confirmed that the removal efficiency of any metals declined in the presence of the other. Increasing of current resulted in increasing the removal efficiency of both metals at different weight percents. The results confirmed that current efficiencies for removing of copper and cadmium simultaneously decline with increasing of electrolysis time and weight percent of cadmium or with decreasing the weight percent of copper. Current efficiency was higher at the initial stage of electrolysis for all weight percents of metals. The results showed that the decay of copper concentration was exponential at all weight percents of copper, confirming that the electrodeposition of copper is under mass transfer control in the presence of cadmium. While the decay of cadmium concentration was linear at lower weight percent of cadmium then changed to an exponential behavior at high weight percent of cadmium in the presence of copper.