• Title/Summary/Keyword: Co-clustering

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Genetic characterization and population structure of six brown layer pure lines using microsatellite markers

  • Karsli, Taki;Balcioglu, Murat Soner
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.1
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    • pp.49-57
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    • 2019
  • Objective: The first stage in both breeding and programs for the conservation of genetic resources are the identification of genetic diversity in the relevant population. The aim of the present study is to identify genetic diversity of six brown layer pure chicken lines (Rhode Island Red [RIRI, RIRII], Barred Rock [BARI, BARII], Columbian Rock [COL], and line 54 [L-54]) with microsatellite markers. Furthermore, the study aims to employ its findings to discuss the possibilities for the conservation and sustainable use of these lines that have been bred as closed populations for a long time. Methods: In the present study, a total number of 180 samples belonging to RIRI (n = 30), RIRII (n = 30), BARI (n = 30), BARII (n = 30), L-54 (n = 30), and COL (n = 30) lines were genotyped using 22 microsatellite loci. Microsatellite markers are extremely useful tools in the identification of genetic diversity since they are distributed throughout the eukaryotic genome in multitudes, demonstrate co-dominant inheritance and they feature a high rate of polymorphism and repeatability. Results: In this study, we found all loci to be polymorphic and identified the average number of alleles per locus to be in the range between 4.41 (BARI) and 5.45 (RIRI); the observed heterozygosity to be in the range between 0.31 (RIRII) and 0.50 (BARII); and $F_{IS}$ (inbreeding coefficient) values in the range between 0.16 (L-54) and 0.46 (RIRII). The $F_{IS}$ values obtained in this context points out to a deviation from Hardy-Weinberg equilibrium due to heterozygote deficiency in six different populations. The Neighbour-Joining tree, Factorial Correspondence Analysis and STRUCTURE clustering analyzes showed that six brown layer lines were separated according to their genetic origins. Conclusion: The results obtained from the study indicate a medium level of genetic diversity, high level inbreeding in chicken lines and high level genetic differentiation between chicken lines.

Delineation of Rice Productivity Projected via Integration of a Crop Model with Geostationary Satellite Imagery in North Korea

  • Ng, Chi Tim;Ko, Jonghan;Yeom, Jong-min;Jeong, Seungtaek;Jeong, Gwanyong;Choi, Myungin
    • Korean Journal of Remote Sensing
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    • v.35 no.1
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    • pp.57-81
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    • 2019
  • Satellite images can be integrated into a crop model to strengthen the advantages of each technique for crop monitoring and to compensate for weaknesses of each other, which can be systematically applied for monitoring inaccessible croplands. The objective of this study was to outline the productivity of paddy rice based on simulation of the yield of all paddy fields in North Korea, using a grid crop model combined with optical satellite imagery. The grid GRAMI-rice model was used to simulate paddy rice yields for inaccessible North Korea based on the bidirectional reflectance distribution function-adjusted vegetation indices (VIs) and the solar insolation. VIs and solar insolation for the model simulation were obtained from the Geostationary Ocean Color Imager (GOCI) and the Meteorological Imager (MI) sensors of the Communication Ocean and Meteorological Satellite (COMS). Reanalysis data of air temperature were achieved from the Korea Local Analysis and Prediction System (KLAPS). Study results showed that the yields of paddy rice were reproduced with a statistically significant range of accuracy. The regional characteristics of crops for all of the sites in North Korea were successfully defined into four clusters through a spatial analysis using the K-means clustering approach. The current study has demonstrated the potential effectiveness of characterization of crop productivity based on incorporation of a crop model with satellite images, which is a proven consistent technique for monitoring of crop productivity in inaccessible regions.

Keyword networks in RJCC research - A co-word analysis and clustering - (RJCC 연구 키워드 네트워크 - 동시출현단어분석과 군집분석 -)

  • Seo, Hyun-Jin;Choi, Yeong-Hyeon;Oh, Seung-Taek;Lee, Kyu-Hye
    • The Research Journal of the Costume Culture
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    • v.27 no.3
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    • pp.193-205
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    • 2019
  • A trend analysis of research articles in a field of knowledge is significant because it can help in finding out the structural characteristics of the field and the future direction of research through observing change in a time series. We identified the structural characteristics and trends in text data (keywords) gathered from research articles which in itself is an important task in various research areas. The titles and keywords were crawled from research articles published from 2016 to 2018 in the Research Journal of the Costume Culture (RJCC), one of the representative Korean journal in the field of clothing and textile. After we extracted data comprising English titles and keywords from 195 published articles, we transformed it into a 1-mode matrix. We used measures from network analysis (i.e., link, strength, and degree centrality) for evaluating meaningful patterns and trends in the research on clothing and textile. NodeXL was used for visualizing the semantic network. This study observed change in the clothing and textile research trend. In addition to covering the core areas of the field, the subjects of research have been diversifying with every passing year and have evolved onto a developmental direction. The most studied area in articles published by the RJCC was fashion retailing/consumer psychology while aesthetic/historic and fashion industry/policy studies were covered to a more limited extent. We observed that most of the studies reflecting the identity of RJCC share subject keywords to a significant extent.

A study on research trends for gestational diabetes mellitus and breastfeeding: Focusing on text network analysis and topic modeling (임신성 당뇨와 모유수유에 대한 연구 동향 분석: 텍스트네트워크 분석과 토픽모델링 중심)

  • Lee, Junglim;Kim, Youngji;Kwak, Eunju;Park, Seungmi
    • The Journal of Korean Academic Society of Nursing Education
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    • v.27 no.2
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    • pp.175-185
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    • 2021
  • Purpose: The aim of this study was to identify core keywords and topic groups in the 'Gestational diabetes mellitus (GDM) and Breastfeeding' field of research for better understanding research trends in the past 20 years. Methods: This was a text-mining and topic modeling study composed of four steps: 1) collecting abstracts, 2) extracting and cleaning semantic morphemes, 3) building a co-occurrence matrix, and 4) analyzing network features and clustering topic groups. Results: A total of 635 papers published between 2001 and 2020 were found in databases (Web of Science, CINAHL, RISS, DBPIA, RISS, KISS). Among them, 3,639 words extracted from 366 articles selected according to the conditions were analyzed by text network analysis and topic modeling. The most important keywords were 'exposure', 'fetus', 'hypoglycemia', 'prevention' and 'program'. Six topic groups were identified through topic modeling. The main topics of the study were 'cardiovascular disease' and 'obesity'. Through the topic modeling analysis, six themes were derived: 'cardiovascular disease', 'obesity', 'complication prevention strategy', 'support of breastfeeding', 'educational program' and 'management of GDM'. Conclusion: This study showed that over the past 20 years many studies have been conducted on complications such as cardiovascular diseases and obesity related to gestational diabetes and breastfeeding. In order to prevent complications of gestational diabetes and promote breastfeeding, various nursing interventions, including gestational diabetes management and educational programs for GDM pregnancies, should be developed in nursing fields.

Analysis of Defense Communication-Electronics Technologies using Data Mining Technique (데이터 마이닝 기법을 이용한 군 통신·전자 분야 기술 분석)

  • Baek, Seong-Ho;Kang, Seok-Joong
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.24 no.6
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    • pp.687-699
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    • 2020
  • The government-led top-down development approach for weapons system faces the problem of technological obsolescence now that technology has rapidly grown. As a result, the government has gradually expanded the corporate-led bottom-up project implementation method to the defense industry. The key success factor of the bottom-up project implementation is the ability of defense companies to plan their technologies. This paper presented a method of analyzing patent data through data mining technique so that domestic defense companies can utilize it for technology planning activities. The main content is to propose corporate selection techniques corresponding to the defense communication-electronics sectors and conduct principal component analysis and cluster analysis for the International Patent Classification. Through this, the technology was classified into four groups based on the patents of nine companies and the representative enterprises of each group were derived.

Comparison of the oral microbial composition between healthy individuals and periodontitis patients in different oral sampling sites using 16S metagenome profiling

  • Kim, Yeon-Tae;Jeong, Jinuk;Mun, Seyoung;Yun, Kyeongeui;Han, Kyudong;Jeong, Seong-Nyum
    • Journal of Periodontal and Implant Science
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    • v.52 no.5
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    • pp.394-410
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    • 2022
  • Purpose: The purpose of this study was to compare the microbial composition of 3 types of oral samples through 16S metagenomic sequencing to determine how to resolve some sampling issues that occur during the collection of sub-gingival plaque samples. Methods: In total, 20 subjects were recruited. In both the healthy and periodontitis groups, samples of saliva and supra-gingival plaque were collected. Additionally, in the periodontitis group, sub-gingival plaque samples were collected from the deepest periodontal pocket. After DNA extraction from each sample, polymerase chain reaction amplification was performed on the V3-V4 hypervariable region on the 16S rRNA gene, followed by metagenomic sequencing and a bioinformatics analysis. Results: When comparing the healthy and periodontitis groups in terms of alpha-diversity, the saliva samples demonstrated much more substantial differences in bacterial diversity than the supra-gingival plaque samples. Moreover, in a comparison between the samples in the case group, the diversity score of the saliva samples was higher than that of the supra-gingival plaque samples, and it was similar to that of the sub-gingival plaque samples. In the beta-diversity analysis, the sub-gingival plaque samples exhibited a clustering pattern similar to that of the periodontitis group. Bacterial relative abundance analysis at the species level indicated lower relative frequencies of bacteria in the healthy group than in the periodontitis group. A statistically significant difference in frequency was observed in the saliva samples for specific pathogenic species (Porphyromonas gingivalis, Treponema denticola, and Prevotella intermedia). The saliva samples exhibited a similar relative richness of bacterial communities to that of sub-gingival plaque samples. Conclusions: In this 16S oral microbiome study, we confirmed that saliva samples had a microbial composition that was more similar to that of sub-gingival plaque samples than to that of supra-gingival plaque samples within the periodontitis group.

Analyzing the Trends of Culture Technology using National Research Projects (문화기술(CT) 연구 동향 분석: 국가연구과제를 중심으로)

  • Lee, Beom-Hun;Jeon, Woojin;Geum, Youngjung
    • The Journal of the Korea Contents Association
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    • v.21 no.11
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    • pp.64-76
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    • 2021
  • Culture technology (CT) becomes important in the recent environment where digital technology drives content-based innovations. However, technological trends of CT have not been systematically discussed. Especially, the trends of CT should be analyzed from the national perspective, because CT has grown with the help of government-driven innovation. Therefore, this paper aims to analyze CT trends focusing on national research projects. We collected data on CT from the national science and technology information service (NTIS) database, analyzed the keyword co-occurrence network, and identified the patterns of technological innovation using a clustering analysis. As a result, we found that CT has contributed to the digital content and cultural media, and has been actively developed with the help of machine learning technique. Especially, due to the rise of Covid-19, the non-face-to-face online content is rapidly increasing. This study provides important clues for understanding, analyzing CT trends.

Extraction of Author Identification Elements of Overseas Academic Papers on Authority Data System for Science and Technology (과학기술 전거데이터 시스템에서의 해외 학술논문 저자 식별요소 추출)

  • Choi, Hyunmi;Lee, Seokhyoung;Kim, Kwangyoung;Kim, Hwanmin
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2013.05a
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    • pp.711-713
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    • 2013
  • Various human resource information of the world can be found according to spread of social network such as facebook and twitter. There are an amounts of researcher information on the science and technology area but it is difficult to find a suitable researcher for research or business such as research partner, because researcher information is not systematically arranged. To solver this problem, we are constructing authority data system for science and technology based on authority information of overseas academic papers. In this paper, in order to construct the authority data, we extracts author identification elements from millions of overseas academic papers, which are published from 1994 to 2012. There are more than 50 author identification elements such as author name, affiliation, paper title, publisher, year, keywords, co-author, co-author's affiliation in Korean, English, Chinese, and Japanese. We construct the element database by extracting and storing an author identification information based on the elements from overseas academic papers. Future works includes that the authority database for overseas academic papers is constructed by storing an academic activities of researchers after author clustering with these extracted elements. The authority data is used to improve the researcher information utilization and activate community to find a suitable research partner or a business examiner.

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Rapid discrimination system of Chinese cabbage (Brassica rapa) at metabolic level using Fourier transform infrared spectroscopy (FT-IR) based on multivariate analysis (배추 대사체 추출물의 FT-IR 스펙트럼 및 다변량 통계분석을 통한 계통 신속 식별 체계)

  • Ahn, Myung Suk;Lim, Chan Ju;Song, Seung Yeob;Min, Sung Ran;Lee, In Ho;Nou, Ill-Sup;Kim, Suk Weon
    • Journal of Plant Biotechnology
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    • v.43 no.3
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    • pp.383-390
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    • 2016
  • To determine whether FT-IR spectral analysis based on multivariate analysis could be used to discriminate Chinese cabbage breeding line at metabolic level, whole cell extracts of nine different breeding lines (three paternal, three maternal and three $F_1$ lines) were subjected to Fourier transform infrared spectroscopy (FT-IR). FT-IR spectral data of Chinese cabbage plants were analyzed by principal component analysis (PCA), partial least square discriminant analysis (PLS-DA), and hierarchical clustering analysis (HCA). The hierarchical dendrograms based on PLS-DA from two of three cross combinations showed that paternal, maternal, and their progeny $F_1$ lines samples were perfectly separated into three branches in breeding line dependent manner. However, a cross combination failed to fully discriminate them into three branches. Thus, hierarchical dendrograms based on PLS-DA of FT-IR spectral data of Chinese cabbage breeding lines could be used to represent the most probable chemotaxonomical relationship among maternal, paternal, and $F_1$ plants. Furthermore, these metabolic discrimination systems could be applied for rapid selection and classification of useful Chinese cabbage cultivars.

Fire Detection Approach using Robust Moving-Region Detection and Effective Texture Features of Fire (강인한 움직임 영역 검출과 화재의 효과적인 텍스처 특징을 이용한 화재 감지 방법)

  • Nguyen, Truc Kim Thi;Kang, Myeongsu;Kim, Cheol-Hong;Kim, Jong-Myon
    • Journal of the Korea Society of Computer and Information
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    • v.18 no.6
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    • pp.21-28
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    • 2013
  • This paper proposes an effective fire detection approach that includes the following multiple heterogeneous algorithms: moving region detection using grey level histograms, color segmentation using fuzzy c-means clustering (FCM), feature extraction using a grey level co-occurrence matrix (GLCM), and fire classification using support vector machine (SVM). The proposed approach determines the optimal threshold values based on grey level histograms in order to detect moving regions, and then performs color segmentation in the CIE LAB color space by applying the FCM. These steps help to specify candidate regions of fire. We then extract features of fire using the GLCM and these features are used as inputs of SVM to classify fire or non-fire. We evaluate the proposed approach by comparing it with two state-of-the-art fire detection algorithms in terms of the fire detection rate (or percentages of true positive, PTP) and the false fire detection rate (or percentages of true negative, PTN). Experimental results indicated that the proposed approach outperformed conventional fire detection algorithms by yielding 97.94% for PTP and 4.63% for PTN, respectively.