• Title/Summary/Keyword: Cell-centered

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Dynamic Behavioral Prediction of Escherichia coli Using a Visual Programming Environment (비쥬얼 프로그래밍 환경을 이용한 Escherichia coli의 동적 거동 예측)

  • Lee, Sung-Gun;Hwang, Kyu-Suk;Kim, Cheol-Min
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2004.11a
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    • pp.39-49
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    • 2004
  • When there is a lack of detailed kinetic information, dFBA(dynamic flux balance analysis) has correctly predicted cellular behavior under given environmental conditions with FBA and different ial equations. However, until now, dFBA has centered on substrate concentration, cell growth, and gene on/off, but a detailed hierarchical structure of a regulatory network has not been taken into account. For this reason, the dFBA has limited the represen tation of interactions between specific regulatory proteins and genes and the whole transcriptional regulation mechanism with environmental change. Moreover, to calculate optimal metabolic flux distribution which maximizes the growth flux and predict the b ehavior of cell system, linear programming package(LINDO) and spreadsheet package(EXCEL) have been used simultaneously. thses two software package have limited in the visual representation of simulation results and it can be difficult for a user to look at the effects of changing inputs to the models. Here, we descirbes the construction of hierarchical regulatory network with defined symbolsand the development of an integrated system that can predict the total control mechanism of regulatory elements (opero ns, genes, effectors, etc.), substrate concentration, growth rate, and optimal flux distribution with time. All programming procedures were accoplished in a visual programming environment (LabVIEW).

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IMPROVEMENT OF A SEMI-IMPLICIT TWO-PHASE FLOW SOLVER ON UNSTRUCTURED MESHES (비정렬 격자계에서의 물-기체 2상 유동해석코드 수치 기법 개선)

  • Lee, H.D.;Jeong, J.J.;Cho, H.K.;Kwon, O.J.
    • 한국전산유체공학회:학술대회논문집
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    • 2010.05a
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    • pp.380-388
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    • 2010
  • A thermal-hydraulic code, named CUPID, has been developed for the analysis of transient two-phase flows in nuclear reactor components. A two-fluid three-field model was used for steam-water two-phase flows. To obtain numerical solutions, the finite volume method was applied over unstructured cell-centered meshes. In steam-water two-phase flows, a phase change, i.e., evaporation of condensation, results in a great change in the flow field because of substantial density difference between liquid and vapor phases. Thus, two-phase flows are very sensitive to the local pressure that determines the phase change. This in turn puts emphasis on the accurate evaluation of local pressure gradient. This paper presents a new numerical scheme to evaluate the pressure gradient at cell centers on unstructured meshes. The results of the new scheme for a simple test function a gravity-driven cavity, and a wall boiling two-phase flow are compared with those of the previous schemes in the cupid code.

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NUMERICAL METHOD FOR TWO-PHASE FLOW ANALYSIS USING SIMPLE-ALGORITHM ON AN UNSTRUCTURED MESH (비정렬격자 SIMPLE 알고리즘기반 이상유동 수치해석 기법)

  • Kim, Jong-Tae;Park, Ik-Kyu;Cho, Hyung-Kyu;Kim, Kyung Doo;Jeong, Jae-Jun
    • Journal of computational fluids engineering
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    • v.13 no.4
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    • pp.86-95
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    • 2008
  • For analyses of multi-phase flows in a water-cooled nuclear power plant, a three-dimensional SIMPLE-algorithm based hydrodynamic solver CUPID-S has been developed. As governing equations, it adopts a two-fluid three-field model for the two-phase flows. The three fields represent a continuous liquid, a dispersed droplets, and a vapour field. The governing equations are discretized by a finite volume method on an unstructured grid to handle the geometrical complexity of the nuclear reactors. The phasic momentum equations are coupled and solved with a sparse block Gauss-Seidel matrix solver to increase a numerical stability. The pressure correction equation derived by summing the phasic volume fraction equations is applied on the unstructured mesh in the context of a cell-centered co-located scheme. This paper presents the numerical method and the preliminary results of the calculations.

VOLUME CAPTURING METHOD USING UNSTRUCTURED GRID SYSTEM FOR NUMERICAL ANALYSIS OF MULTIPHASE FLOWS (다상유동 해석을 위한 비정렬격자계를 사용한 체적포착법)

  • Myong, H.K.
    • 한국전산유체공학회:학술대회논문집
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    • 2009.11a
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    • pp.201-210
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    • 2009
  • A volume capturing method using unstructured grid system for numerical analysis of multiphase flows is introduced in the present paper. This method uses an interface capturing method (CICSAM) in a volume of fluid(VOF) scheme for phase interface capturing. The novelty of CICSAM lies in the adaptive combination of high resolution discretization scheme which ensures the preservation of the sharpness and shape of the interface while retaining boundedness of the field, and no explicit interface reconstruction which is perceived to be difficult to implement on unstructured grid system. Several typical test cases for multiphase flows are presented, which are simulated by an in-house solution code(PowerCFD). This code employs an unstructured cell-centered method based on a conservative pressure-based finite-volume method with CICSAM. It is found that the present method simulates efficiently and accurately complex free surface flows such as multiphase flows.

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Numerical Simulation of Multiphase Flows with Material Interface due to Density Difference by Interface Capturing Method (경계면 포착법에 의한 밀도차이에 따른 물질경계면을 갖는 다상유동 수치해석)

  • Myon, Hyon-Kook
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.33 no.6
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    • pp.443-453
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    • 2009
  • The Rayleigh-Taylor instability, the bubble rising in both partially and fully filled containers and the droplet splash are simulated by an in-house solution code(PowerCFD), which are typical benchmark problems among multiphase flows with material interface due to density difference. The present method(code) employs an unstructured cell-centered method based on a conservative pressure-based finite-volume method with interface capturing method(CICSAM) in a volume of fluid(VOF) scheme for phase interface capturing. The present results are compared with other numerical solutions found in the literature. It is found that the present method simulates efficiently and accurately complex free surface flows such as multiphase flows with material interface due to both density difference and instability.

Development of 3-D Flow Analysis Code Using Unstructured Grid System (II) - Code's Performance Evaluation - (비정렬격자계를 사용하는 3차원 유동해석코드 개발 (II) - 코드성능평가 -)

  • Kim, Jong-Tae;Kim, Jong-Eun;Myong, Hyon-Kook
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.29 no.9 s.240
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    • pp.1057-1064
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    • 2005
  • A conservative finite-volume numerical method using unstructured meshes, which is developed by the authors, is evaluated for its application to several 2-D benchmark problems using a variety of quadrilateral, triangular and hybrid meshes. The present pressure-based numerical method for unstructured mesh clearly demonstrates the same accuracy and robustness as that fur typical structured mesh.

Lead time check method of User centered USN environment Cell Line (작업자 중심 USN 환경 셀 생산라인의 실시간 표준 작업시간 측정 방안)

  • Kim, Han-Woong;Hwang, Byung-Hyun;Park, Peom
    • 한국IT서비스학회:학술대회논문집
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    • 2008.11a
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    • pp.246-249
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    • 2008
  • 본 연구는 기존의 셀 생산라인에서 관리자가 직접 체크하기 힘들었던 부분인 표준작업시간의 측정을 USN ( Ubiquitous Sensor Network ) 환경을 통해서 측정하여 셀 생산라인의 표준작업시간 측정 방법을 개선하는 것이 목적이다. 측정 방법의 개선 방안으로는 셀 생산라인 내 Sensor Network 및 웹 기반 관리 시스템을 도입하는 것이다. 이 시스템은 USN 환경을 통해서 작업시간을 측정하고 측정된 데이터는 서버로 전송되어 관리자는 웹을 통해 확인, 관리 하는 시스템이다. 본 연구를 통해서 작업시간 및 불량품 데이터를 실시간으로 확인하는 시스템 체계를 구축할 수 있었다. 이를 통해서 생산 관리 부분에 정보 시스템을 도입하여 관리 수준을 향상 시킬 수 있을 것이다.

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Numerical optimization design by computational fluid dynamics (전산유체역학을 이용한 수치 최적설계)

  • Lee, Jeong-U;Mun, Yeong-Jun
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.20 no.7
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    • pp.2347-2355
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    • 1996
  • Purpose of the present study is to develop a computational design program for shape optimization, combining the numerical optimization technique with the flow analysis code. The present methodology is then validated in three cases of aerodynamic shape optimization. In the numerical optimization, a feasible direction optimization algorithm and shape functions are considered. In the flow analysis, the Navier-Stokes equations are discretized by a cell-centered finite volume method, and Roe's flux difference splitting TVD scheme and ADI method are used. The developed design code is applied to a transonic channel flow over a bump, and an external flow over a NACA0012 airfoil to minimize the wave drag induced by shock waves. Also a separated subsonic flow over a NACA0024 airfoil is considered to determine a maximum allowable thickness of the airfoil without separation.

EXPLICIT BOUNDS FOR THE TWO-LEVEL PRECONDITIONER OF THE P1 DISCONTINUOUS GALERKIN METHOD ON RECTANGULAR MESHES

  • Kim, Kwang-Yeon
    • Journal of the Korean Society for Industrial and Applied Mathematics
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    • v.13 no.4
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    • pp.267-280
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    • 2009
  • In this paper we investigate a simple two-level additive Schwarz preconditioner for the P1 symmetric interior penalty Galerkin method of the Poisson equation on rectangular meshes. The construction is based on the decomposition of the global space of piecewise linear polynomials into the sum of local subspaces, each of which corresponds to an element of the underlying mesh, and the global coarse subspace consisting of piecewise constants. This preconditioner is a direct combination of the block Jacobi iteration and the cell-centered finite difference method, and thus very easy to implement. Explicit upper and lower bounds for the maximum and minimum eigenvalues of the preconditioned matrix system are derived and confirmed by some numerical experiments.

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Computation of the Euler Equations on the Adaptive Cartesian Grids Using the Point Gauss-Seidel Method (적응형 Cartesian 격자기법에서 Point Gauss-Seidel 기법을 사주한 Euler 방정식 계산)

  • Lee J. G.;Chang K. S.
    • 한국전산유체공학회:학술대회논문집
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    • 2001.05a
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    • pp.93-98
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    • 2001
  • An adaptive Cartesian grid method having the best elements of structured, unstructured, and Cartesian grids is developed to solve the steady two-dimensional Euler equations. The solver is based on a cell-centered finite-volume method with Roe's flux-difference splitting and implicit point Gauss-seidel time integration method. Calculations of several compressible flows are carried out to show the efficiency of the developed computer code. The results were generally in good agreements with existing data in the literature and the developed code has the good ability to capture important feature of the flows.

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