• 한국수소및신에너지학회논문집
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• 제27권5호
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• pp.533-539
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• 2016

This study was performed to evaluate the characteristics of start-up of anaerobic digestion from food waste with different inoculum ratios. The hydrogen yield was similar with different inoculum ratios. The hydrogen production rate increased with increasing inoculum ratio. But the specific hydrogen production rate decreased with increasing inoculum ratio. Total volatile fatty acids composition analysis showed that butyrate and acetate were the prevalent products in all reactors, followed by lactate and propionate. The acetate was most prevalent product in reactors at $X_0/S_0=0.080$ and 0.159. But in reactors at $X_0/S_0=0.239$ and 0.318, butyrate accounted for greater than 50% of the total volatile fatty acids.

• Journal of Microbiology and Biotechnology
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• 제11권6호
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• pp.1087-1092
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• 2001

The effect of Sodium Butyrate (NaBu) on the N-linked oligosaccharide structure of Erythropoietin (EPO) was investigated. Recombinant human EPO was produced by CHO cells grown in an $MEM{\alpha}$ medium with or without 5 mM NaBu, and purified from the culture supernatants using a heparin-sepharose affinity column and immunoaffinity column. The N-linked oligosaccharides were released enzymatically and isolated by paper chromatography. The isolated oligosaccharides were then labeled with a fluorescent dye, 2-aminobenzamide, and analyzed with MonoQ anion exchange chromatography and GlycosepN amide chromatography for the assignment of a GU (glucose unit) vague. A glycan analysis by HPLC showed that the most significant characteristic effect of NaBu was a reduction in the proportion of glycans with Sri-and tetrasialylated oligodaccharides from $21.30\%$ (tri-) and $14.86\%$ (tetra-) in the control cultures (without NaBu) to $8.72\%$ (tri-) and $1.25\%$ (tetra-) in the NaBu-treated cultures, respectively. It was also found that the proportion of asialo-glycan increased from $12.54\%\;to\;23.6\%$ when treated with NaBu.

• 생명과학회지
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• 제22권3호
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• pp.306-311
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• 2012

내냉성 세균인 Pseudomonas mandelii로부터 lipase 유전자(lipT)를 클로닝하고 염기서열을 분석하였다. 열린해독틀 (open reading frame)은 1,686 bp로 구성되어 있고, 562개의 아미노산을 코딩한다. 서열분석 결과 많은 세린 효소에서 발견되는 Gly-X-Ser-X-Gly 모티프가 존재한다(Gly-His-Ser-Leu-Gly). 재조합 LipT 단백질은 대장균에서 주로 inclusion body 형태로 발현되었다. 니켈 친화성 크로마토그라피 방법으로 LipT 단백질을 분리하였으며 소량의 LipT 단백질이 refold 되었다. 이 효소는 p-nitrophenyl butyrate (C4)과 p-nitrophenyl octanoate (C8)에 대해 기질 특이성을 나타내었다.

• Journal of Microbiology and Biotechnology
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• 제31권10호
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• pp.1393-1400
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• 2021

Acetone-butanol-ethanol (ABE) fermentation by the anaerobic bacterium Clostridium acetobutylicum has been considered a promising process of industrial biofuel production. Phosphotransbutyrylase (phosphate butyryltransferase, PTB) plays a crucial role in butyrate metabolism by catalyzing the reversible conversion of butyryl-CoA into butyryl phosphate. Here, we report the crystal structure of PTB from the Clostridial host for ABE fermentation, C. acetobutylicum, (CaPTB) at a 2.9 Å resolution. The overall structure of the CaPTB monomer is quite similar to those of other acyltransferases, with some regional structural differences. The monomeric structure of CaPTB consists of two distinct domains, the N- and C-terminal domains. The active site cleft was formed at the interface between the two domains. Interestingly, the crystal structure of CaPTB contained eight molecules per asymmetric unit, forming an octamer, and the size-exclusion chromatography experiment also suggested that the enzyme exists as an octamer in solution. The structural analysis of CaPTB identifies the substrate binding mode of the enzyme and comparisons with other acyltransferase structures lead us to speculate that the enzyme undergoes a conformational change upon binding of its substrate.

• Animal Bioscience
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• 제36권10호
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• pp.1546-1557
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• 2023

Objective: The present study aimed to evaluate the effects of extruded and unextruded feeding on the performance, milk composition, digestibility and ruminal fermentation of dairy cows through a meta-analysis. Methods: The database was compiled from 53 studies in Scopus and PubMed. The data were analyzed using a random effects model in OpenMEE software. Extruded feed was grouped as the experiment group while and the others as control group. The bias of publication in the main parameter of dairy performance was evaluated by a funnel plot. Results: The result showed that extruded feed enhanced the milk yield, dry matter and crude protein digestibility, butyrate and valerate acid production (p<0.05). Meanwhile, the extruded feed significantly decreased the milk fat and protein concentration (p<0.05). Also, the iso-butyrate and iso-valerate in unextruded feeding was significantly higher than the extruded feed (p<0.05). Conclusion: It was concluded from the meta-analysis that extruded feed effectively improved the milk production and milk lactose concentration, dry matter and protein digestibility, but not the milk fat and protein concentration.

• Journal of Microbiology and Biotechnology
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• 제34권6호
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• pp.1356-1364
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• 2024

Isoamyl fatty acid esters (IAFEs) are widely used as fruity flavor compounds in the food industry. In this study, various IAFEs were synthesized from isoamyl alcohol and various fatty acids using a cutinase enzyme (Rcut) derived from Rhodococcus bacteria. Rcut was immobilized on methacrylate divinylbenzene beads and used to synthesize isoamyl acetate, butyrate, hexanoate, octanoate, and decanoate. Among them, Rcut synthesized isoamyl butyrate (IAB) most efficiently. Docking model studies showed that butyric acid was the most suitable substrate in terms of binding energy and distance from the active site serine (Ser114) γ-oxygen. Up to 250 mM of IAB was synthesized by adjusting reaction conditions such as substrate concentration, reaction temperature, and reaction time. When the enzyme reaction was performed by reusing the immobilized enzyme, the enzyme activity was maintained at least six times. These results demonstrate that the immobilized Rcut enzyme can be used in the food industry to synthesize a variety of fruity flavor compounds, including IAB.

• 생명과학회지
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• 제19권9호
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• pp.1314-1320
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• 2009

히스톤 디아세틸라이제 저해제(HDACI)는 최근에 새로운 미래형 항암제로 주목을 받고 있으며 다른 항암요법 및 치료제와의 병용치료에도 효과적으로 적용될 수 있을 것으로 기대하고 있다. HDACI은 다양한 조직기원의 암세포에서 증식억제 및 세포사멸 유도능이 시험되어 왔으나 비소세포폐암 세포에서 그 작용 및 기전이 명확히 조사된 바가 없다. 본 연구는 HDACI 중의 하나인 sodium butyrate (SB)를 비소세포폐암 세포주인 H460에 처리하여 세포생존율, 세포주기 분석, 세포사멸도를 평가하고, 이와 관련하여 세포사멸 관련 단백질, p53, ERK의 변화를 조사하고자 하였다. 3가지 다른 농도(2.5, 7.5, 20 mM)의 SB에 H460 세포가 48시간 노출되었을 때, 세포 생존율은 농도의존적으로 감소되었으나 7.5 mM 이상의 농도에서 대조군에 비해 유의한 생존을 감소를 보였고, 20 mM에서 생존을 50% 전후를 나타냈다. SB노출은 H460 세포의 사멸을 유발하였는데, 세포사의 유형은 아포토시스와 괴사가 동시에 발생함이 Annexin-V 분석으로 확인되었다. H460 세포에서 SB에 의해 유발되는 뚜렷한 세포주기의 변화양상은 G2/M기정지였으며, 이러한 세포주기의 지연현상으로 세포사멸이 초래되는 것으로 생각된다. SB처리는 아포토시스 발생관련 효소인 caspase-3과 caspase-7의 활성화를 유발하였으며, 이에 의한 PARP 단백 질의 분절화도 관찰되었다. 동시에, 항세포사별 단백질인 XIAP의 단백질 함량은 감소함을 보였다. SB 노출에 의한 세포주기의 G2/M기의 정지현상과 관련하여는 p53 단백질의 증가가 주목할 만한 하였다. SB의 H460세포에의 처리는 일반 ERK단백질의 함량 변화를 유도하지 않았으나, 인산화형의 ERK는 SB처리농도에 의존적으로 그 단백질 함량이 감소하였다. 이는 ERK가 비소세포폐암 세포인 H460에서 세포생존 및 유지와 관련된 단백질의 인산화에 계속적으로 관여하고 있다는 사실을 암시한다. 즉, SB의 처리는 ERK의 인산화를 유의하게 억제하는 기전과 관련이 있을 가능성이 높다고 추측된다. 향후 SB의 노출에 의한 PERK 감소 기전에 대한 연구가 추가적으로 진행되면 SB의 더욱 효율적인 암세포 사멸 유도 전략수립에 도움을 줄 수 있을 것이라 예상된다.

• Journal of Microbiology and Biotechnology
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• 제13권6호
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• pp.926-936
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• 2003

Overexpression of human Bcl-2 protein in recombinant Chinese hamster ovary (rCHO) cells producing humanized antibody (SH2-0.32) considerably suppressed sodium butyrate (NaBu)-induced apoptosis during batch culture by using commercially available serum-free medium, which extended the culture longevity. Due to the extended culture longevity provided by the anti-apoptotic effect of Bcl-2 overexpression, the final antibody concentration of 14C6-bcl-2 culture (Bcl-2 high producer, $23\;\mu\textrm{g}\;ml^{-1}$) was 2 times higher than that of the $SH2-0.32-{\Delta}bcl-2$ culture (cells transfected with bcl-2-deficient plasmid, $10.5\;\mu\textrm{g}\;ml^{-1}$) in the presence of NaBu. To determine the effect of NaBu/Bcl-2 overexpression on the molecular integrity of protein products, antibodies purified from 14C6-bcl-2 and $SH2-0.32-{\Delta}bcl-2$ cultures in the presence of NaBu were characterized by using various molecular assay systems. For comparison, antibody purified from the parental rCHO cell culture (SH2-0.32) in the absence of NaBu was also characterized. No significant changes in molecular weight of antibodies could be observed by SDS-PAGE. From GlycoSep-N column analysis, it was found that the core oligosaccharide structure ($GlcNAc_2Man_3GlcNAc_2$) was not affected by NaBu/Bcl-2 overexpression, while the microheterogeneity of N-linked oligosaccharide structure was slightly affected. Compared with the antibody produced in the absence of NaBu, the proportion of neutral oligosaccharides was increased from 10% (14C6-bcl-2) to 16% ($SH2-0.32-{\Delta}bcl-2$) in the presence of NaBu, which was accompanied by the reduced proportion of acidic oligosaccharides, especially of monosialylated and disialylated forms. The changes in microheterogeneous oligoformal structures of antibody in turn affected the mobility of antibody isoforms in isoelectric focusing (IEF), resulting in the occurrence of some more basic antibody isoforms produced in the presence of NaBu. However, the antigen-antibody binding properties were not changed by alteration of glycosylation pattern. The competitive enzyme-linked immunosorbent assay (ELISA) showed that the antibody produced by NaBu/Bcl-2 overexpression maintained its antigen-antibody binding properties with binding affinity of about $2.5{\times}10^9{\;}M^{-1}$. Taken together, no significant effects of NaBu/Bcl-2 overexpression on the molecular integrity of antibodies, produced by using serum-free medium, could be observed by the molecular assay systems.

• 한국초지조사료학회지
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• 제28권3호
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• pp.255-264
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• 2008

본 연구는 반추위 보호 choline의 급여가 in vitro 반추위 발효특성과 착유우의 유생산성에 미치는 영향을 검토하기 위해 수행되었다. 시험구 배치는 기초사료 첨가구(T1), 기초사료 +23 g/일 보호처리를 하지 않은 choline과 부형제 첨가구(T2) 및 기초사료+ 25.56 g/일 보호 choline 첨가구(T3)의 3처리로 하였다. 보호 choline의 첨가가 in vitro 배양액의 pH에 미치는 영향은 3시간을 제외한 전 배양시간에서 없었으며, ammonia 농도에 대한 보호 choline의 영향도 배양 9시간을 제외한 전 배양시간에서 없었다. 보호 choline의 첨가가 acetate 및 total-VFA 농도에 미치는 영향은 없었으며, propionate 및 butyrate 농도의 경우 배양 6시간을 제외한 전 배양시간에서 보호 choline 첨가의 영향도 없었다. 보호 choline의 급여로 착유우의 산유량과 유지방 및 유당 함량이 증가되었으나(p<0.05), 보호 choline의 급여가 착유우의 유단백질, 무지고형분, 총고형물, MUN, 체세포 수 및 지방산에 미치는 영향은 없었다. 따라서 반추위 보호 choline은 in vitro 반추위 발효에 대한 별다른 영향 없이 산유량과 유지방 및 유당 함량을 증가시키는데 효과적인 것으로 판단된다.

• 대한환경공학회지
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• 제29권1호
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• pp.54-61
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• 2007

pH가 혐기성 수소 발효에 미치는 영향을 고찰하기 위해 배양기간 동안 pH를 $3\sim10$까지 일정하게 유지시킨 상태에서 수소생산 효율을 살펴보았다. 유입기질을 sucrose로 하여 생성된 가스는 이산화탄소와 수소였으며 메탄가스는 검출되지 않았다. 수정 Gompartz 방정식을 이용하여 수소가스 발생량$(P_h)$과 최대수소 생성율$(R_h)$을 회귀분석하였을 때 pH 5에서 수소가스 발생량$(P_h)$은 약 1182 mL이고 최대수소 생성율$(R_h)$은 112.46 mL/g dry wt biomass/hr이였다. 수소 전환율은 22.56%이였으며 butyrate/acetate 비가 pH 5에서는 1.63, pH 6에서는 0.38로 ratio값이 높은 pH 5에서 효율이 더 좋다는 것을 확인할 수 있었다. Haldane equation을 이용하여 비수소생산율을 산정해 본 결과 최대 비수소생산율은 119.61 mL/g VSS/hr이였고, 최대 비수소생산율을 나타내는 pH는 5.5로 판명되었다.