• Title/Summary/Keyword: Bio tagging

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Effect of Bio-logger Attachment Location on Blood Characteristics and Bio-logger Attachment Efficiency in Spotted Sea Bass Lateolabrax maculatus (바이오로거 부착 위치가 점농어(Lateolabrax maculatus)의 혈액 성상 및 바이오로거 부착효율에 미치는 영향)

  • Sung-Yong Oh
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.56 no.5
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    • pp.651-659
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    • 2023
  • The effect of bio-logger tagging location on blood characteristics and bio-logger attachment efficiency in spotted sea bass (mean body weight 2356.7 g) was investigated. The fish were tagged at four different tagging locations: no-tag (control), operculum attachment (OA), dorsal muscle attachment (DA), and cauda peduncle muscle attachment (CA). The blood properties and bio-logger attachment efficiencies were examined on days 1, 7, 14, and 35 after tagging the bio-logger at each tagging location. During the experimental periods, the concentrations of hematocrit and hemoglobin in whole blood, and GOT (glutamic oxaloacetic transaminase), GPT (glutamic pyruvic transaminase), total protein (TP), glucose, total cholesterol, cortisol, and superoxide dismutase in plasma were not affected by the attachment location of the bio-logger, however, the TP concentration was significantly lower in OA than in the control group on day 7. After tagging for 35 days, the efficiencies of bio-logger attachment in the OA, DA, and CA after tagging for 35 days were 33.3%, 100.0%, and 33.3%, respectively. These results indicate that, in our experimental condition, the most appropriate bio-logger attachment location is DA, providing basic information on bio-logger utilization methods for ecological and biological biotelemetry surveys of the spotted sea bass.

Effects of External Pop-up Satellite Archival Tag (PSAT) Tagging Method on Blood Indices and PSAT Attachment Efficiency of Yellowtail Seriola quinqueradiata (Pop-up Satellite Archival Tag (PSAT) 체외 부착방법에 따른 방어(Seriola quinqueradiata)의 혈액성상 및 PSAT 부착효율)

  • Oh, Sung-Yong;Jeong, Yu-Kyung
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.54 no.1
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    • pp.38-45
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    • 2021
  • This study aimed to determine the effect of the pop-up satellite archival tag (PSAT) tagging method on the blood indices and PSAT attachment efficiency of yellowtail Seriola quinqueradiata (mean body weight 10.2 kg). Based on tagging method, the fishes were divided in four different groups: untagged (control), single anchor (SA), dual anchor (DA), and silicon tube (ST). The blood indices and PSAT attachment efficiency were investigated on days 1, 14, and 28 after tagging PSAT on the muscle below the dorsal fin for each tagging method in triplicates. After 28 days of tagging with PSAT, a significant increase was observed in plasma glucose level in the ST group and in total protein level in the DA and ST groups. The levels of glucose, total protein, and total cholesterol in the SA group after 28 days of tagging were significantly lower than in the control group. The efficiencies of PSAT attachment were 0% in the SA and DA groups on 14 days post-tagging, and 66.7% in the ST group on 28 days post-tagging. The study results indicate that the proper PSAT tagging method is the ST type. The information obtained in this study presents valuable data that provide the required PSAT operational tool for industrial development and ecological monitoring of yellowtail.

Preparation of Metal-p-aminobenzyl-DOTA Complex Using Magnetic Particles for Bio-tagging in Laser Ablation ICP-MS

  • Yoon, S.Y.;Lim, H.B.
    • Bulletin of the Korean Chemical Society
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    • v.33 no.11
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    • pp.3665-3670
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    • 2012
  • Metal-p-$NH_2$-Bn-DOTA (paraammionobenzyl-1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid: ABDOTA) complex was synthesized and purified for bio-tagging to quantify biological target materials using laser ablation (LA)-ICP-MS. Since the preparation of a pure and stable tagging complex is the key procedure for quantification, magnetic particles were used to purify the synthesized metal-ABDOTA complex. The magnetic particles immobilized with the complex attracted to a permanent magnet, resulting in fast separation from free un-reacted metal ions in solution. Gd ions formed the metal-complex with a higher yield of 64.3% (${\pm}3.9%$ relative standard deviation (RSD)) than Y ions, 52.3% (${\pm}2.5%$ RSD), in the pH range 4-7. The complex bound to the magnetic particles was released by treatment with a strong base, of which the recovery was 81.7%. As a reference, a solid phase extraction (SPE) column packed with Chelex-100 resin was employed for separation under similar conditions and produced comparable results. The tagging technique complemented polydimethylsiloxane (PDMS) microarray chip sampling in LA-ICP-MS, allowing determination of small sample volumes at high throughputs. For application, immunoglobulin G (IgG) was immobilized on the pillars of PDMS microarray chips and then tagged with the prepared Gd complex. IgG could then be determined through measurement of Gd by LA-ICP-MS. A detection limit of 1.61 ng/mL (${\pm}0.75%$ RSD) for Gd was obtained.

Analytical Techniques Using ICP-MS for Clinical and Biological Analysis

  • Ko, Jungaa;Lim, H. B.
    • Mass Spectrometry Letters
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    • v.6 no.4
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    • pp.85-90
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    • 2015
  • This article reviews recent analytical techniques using inductively coupled plasma-mass spectrometry (ICP-MS) immunoassay for clinical and bio analysis. We classified the techniques into two categories, direct and indirect analysis, which depend upon a guideline of whether tagging materials are used or not. Direct analysis is well known, and generally used in conjunction with various other techniques, such as laser ablation, chromatographic separations, etc. Recently, indirect analysis using tagging elements has intensively been discussed because of its importance in future applications to bio and clinical analysis, including environmental and food industries. The method has shown advantages of multiplex detection, excellent sensitivity, and short analysis time owing to signal amplification and magnetic separation. Now, it expands the application field from small biomolecules to large cells.

External Attachment of Pop-up Satellite Archival Tag (PSAT) and Water Temperature Affect Oxygen Consumption Rate of the Olive Flounder Paralichthys olivaceus (넙치(Paralichthys olivaceus) 산소 소비율에 미치는 Pop-up Satellite Archival Tag (PSAT) 체외 부착과 수온의 영향)

  • Geun Su Lee;Pil Jun Kang;Hye Mi Park;Sung-Yong Oh
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.56 no.5
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    • pp.660-666
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    • 2023
  • This study aimed to examine the effect of external pop-up satellite archival tags (PSATs) attachment and water temperature on the oxygen consumption rate (OCR) of the olive flounder (mean body weight 2281.7 g). The OCRs of fish were measured under conditions of three different water temperature conditions (15, 20, and 25℃) and two different tagging methods [non-tagging, control; bio-logger external attachment with a miniature PSAT (dummy mrPAT), BEA] using a closed flow-through respirometer. The OCRs of fish linearly increased with the increase in water temperature in both the control and BEA (P<0.001); however, the OCRs of BEA were approximately 1.8-1.9 times lower than those of the control at each water temperature (P<0.001). The Q10 values of the control and BEA were the highest in the water temperature range of 15 to 20℃, but sensitivity to water temperature changes was higher in BEA than in the control. The metabolic energy loss rate (MEL) of fish increased with increasing water temperature regardless of external tagging, but the MEL of the control was higher than that of BEA (P<0.001). These results demonstrate that OCR, thermal sensitivity, and energy expenditure are all affected in adult olive flounder with external PSAT attachment.

Response of Saccharomyces cerevisiae to Ethanol Stress Involves Actions of Protein Asr1p

  • Ding, Junmei;Huang, Xiaowei;Zhao, Na;Gao, Feng;Lu, Qian;Zhang, Ke-Qin
    • Journal of Microbiology and Biotechnology
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    • v.20 no.12
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    • pp.1630-1636
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    • 2010
  • During the fermentation process of Saccharomyces cerevisiae, yeast cells must rapidly respond to a wide variety of external stresses in order to survive the constantly changing environment, including ethanol stress. The accumulation of ethanol can severely inhibit cell growth activity and productivity. Thus, the response to changing ethanol concentrations is one of the most important stress reactions in S. cerevisiae and worthy of thorough investigation. Therefore, this study examined the relationship between ethanol tolerance in S. cerevisiae and a unique protein called alcohol sensitive RING/PHD finger 1 protein (Asr1p). A real-time PCR showed that upon exposure to 8% ethanol, the expression of Asr1 was continuously enhanced, reaching a peak 2 h after stimulation. This result was confirmed by monitoring the fluorescence levels using a strain with a green fluorescent protein tagged to the C-terminal of Asr1p. The fluorescent microscopy also revealed a change in the subcellular localization before and after stimulation. Furthermore, the disruption of the Asr1 gene resulted in hypersensitivity on the medium containing ethanol, when compared with the wild-type strain. Thus, when taken together, the present results suggest that Asr1 is involved in the response to ethanol stress in the yeast S. cerevisiae.

An Implementation of Waiting Queue System based on Mobile NFC (모바일 NFC기반의 순번대기 시스템의 설계)

  • Kim, Sang-yoon;Cho, Kyung-rae;Kim, Jung-han;Bae, Sung-ho;Kang, Sung-in
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2013.05a
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    • pp.862-865
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    • 2013
  • The smartphone digs deep into our lives, is changing our life. With increases the penetration of smart phones, it getting better performance. In recent years, tend to increase its utilization by an increase in the prevalence of smart phones equipped with NFC short-range wireless communication technology based on RFID in a number of areas, including e-cards, tagging. In this paper, we implement a system that can operate the system by traditional saddlecloth way of waiting waiting waiting standby system more efficient by applying NFC.

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Transformation and Mutagenesis of the Nematode-trapping Fungus Monacrosporium sphaeroides by Restriction Enzyme-mediated Integration (REMI)

  • Xu Jin;Mo Ming-He;Zhou Wei;Huang Xiao-Wei;Zhang Ke-Qin
    • Journal of Microbiology
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    • v.43 no.5
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    • pp.417-423
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    • 2005
  • In this study, the nematode-trapping fungus, Monacrosporium sphaeroides, was transformed with a plasmid harboring the hygromycin B phosphotransferase gene, via restriction enzyme-mediated integration (REMI). Frequencies of up to 94 transformants ${\mu}g^{-1}$ per linearized plasmid DNA were obtained by optimizing the PEG concentration, as well as the category and quantity of the added restriction enzyme. $90\%$ of the transformants were determined to be stable for drug resistance when 20 randomly selected transformants were tested. Southern analyses revealed that the transforming DNA was integrated into the M. sphaeroides genome either with or without rearrangement. Five mitotic stable mutant strains were obtained using this approach, all of which had been altered with regard to sporulation capacity and pathogenicity toward nematodes. Southern blot analyses of the five mutants revealed that foreign plasmid DNA had integrated into the genome. Three of the mutants, Tms2316, Tms3583 and Tms1536, exhibited integration at a single location, whereas the remaining two, Tms32 and Tms1913, manifested integration at double or multiple locations. Our results suggest that the transformation of M. sphaeroides via REMI will facilitate insertional mutagenesis, the functional analysis of a variety of genes, and the tagging or cloning of genes of interest.

Optimizing ELECTRA-based model for Zero Anaphora Resolution (생략복원을 위한 ELECTRA 기반 모델 최적화 연구)

  • Park, Jinsol;Choi, Maengsik;Matteson, Andrew;Lee, Chunghee
    • Annual Conference on Human and Language Technology
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    • 2021.10a
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    • pp.329-334
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    • 2021
  • 한국어에서는 문장 내의 주어나 목적어가 자주 생략된다. 자연어 처리에서 이러한 문장을 그대로 사용하는 것은 정보 부족으로 인한 문제 난이도 상승으로 귀결된다. 생략복원은 텍스트에서 생략된 부분을 이전 문구에서 찾아서 복원해 주는 기술이며, 본 논문은 생략된 주어를 복원하는 방법에 대한 연구이다. 본 논문에서는 기존에 생략복원에 사용되지 않았던 다양한 입력 형태를 시도한다. 또한, 출력 레이어로는 finetuning layer(Linear, Bi-LSTM, MultiHeadAttention)와 생략복원 태스크 형태(BIO tagging, span prediction)의 다양한 조합을 실험한다. 국립국어원 무형 대용어 복원 말뭉치를 기반으로 생략복원이 불필요한 네거티브 샘플을 추가하여 ELECTRA 기반의 딥러닝 생략복원 모델을 학습시키고, 생략복원에 최적화된 조합을 검토한다.

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