• Transactions of the Korean Society of Mechanical Engineers A
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• v.28 no.8 s.227
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• pp.1135-1139
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• 2004

This paper presents a microextractor for the separation of DNA molecules by their sizes. The DNA microextractor immobilizes the DNA molecules of specific size in the micropillar array by adjusting the period of the crossed electric field, thus providing a starting-point independent target DNA extraction method without separation process monitoring. The DNA microextractor has been fabricated by a three-mask micromachining process. The velocity of three different DNA molecules has been measured at the electric field of E=5V/0.8cm in the fabricated DNA microextractor, resulting in the reorientation times of $4.80{\pm}0.44sec,\;7.12{\pm}0.75sec$, and $9.88{\pm}0.30sec$ for ${\lambda}$ DNA, micrococcus DNA, and T4 DNA, respectively. T4 DNA is trapped in the micropillar array when the crossed electric field of 5V/0.8cm is applied alternately at a 10 second time interval. The present DNA microextractor filters the DNA in a specific size range by adjusting the magnitude and/or the period of the crossed electric field applied in the micropillar array.

• Proceedings of the Korean Vacuum Society Conference
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• 2012.02a
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• pp.557-557
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• 2012

Silicatein-${\alpha}$, the enzyme extracted from silica spicules in glass sponges, has been studied extensively in the way of chemistry from 1999, in which the pioneering work by Morse, D. E. - the discovery of the enzymatic hydrolysis in Silicatein-${\alpha}$ - was published. Since its reaction conditions are physiologically favored, synthesis of various materials, such as gallium oxide, zirconium oxide, and silicon oxide, was achieved without any hazardous wastes. Although some groups synthesized oxide films and particles, they have not achieved yet controlled morphogenesis in the reaction conditions mentioned above. With the knowledge of catalytic triad involved in hydrolysis of silicone alkoxide and oligomerization of silicic acid, we designed the novel peptide amphiphiles to not only form self-assembled structure, but also display similar activities to silicatein-${\alpha}$. Designed templates were able to self-assemble into left-handed helices for the peptide amphiphiles with L-form amino acid, catalyzing polycondensation of silicic acids onto the surface of them. It led to the formation of silica helices with 30-50 nm diameters. These results were characterized by various techniques, including SEM, TEM, and STEM. Given the situation that nano-bio-technology, the bio-applicable technology in nanometer scale, has been attracting considerable attention; this result could be applied to the latest applications in biotechnology, such as biosensors, lab-on-a-chip, biocompatible nanodevices.

• Journal of Animal Environmental Science
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• v.13 no.1
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• pp.29-34
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• 2007

This study was conducted to develop a reclaimer of the vehicle disinfector to be used at livestock fm. The reclaimer was mainly consisted of ball-valves, geared motors and one-chip processor, and the purpose of the system was to prevent liquid freezing as well as decrease environmental pollution of antiseptic solution. The properly spraying pressure of the vehicle disinfector was found over 1.96 MPa at 1m of the spraying range. While certain amount of the antiseptic solution remained in the injection-pipes, the spray starting time was found not making any significant effect on the remained amount of the antiseptic solution. The amounts of the antiseptic solution remained in the injection-pipes were 50 ml and 270 ml in average, respectively with and without the use of the reclaimer. The reclaimer was the most effective when the connection of the injection-pipe and sprayer line was located below the side-injection-pipe and then connected to the injection-pipe located at the bottom of vehicles.

• Journal of Pharmacopuncture
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• v.25 no.1
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• pp.52-62
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• 2022

Objectives: Snake venom is a complex mixture of various pharmacologically active substances, such as small proteins, peptides, and organic and mineral components. This paper aims to identify and analyse the proteins in common venomous snakes, such as Gloydius blomhoffii (G. blomhoffii) and Agkistrodon acutus (A. acutus), in Korea. Methods: We used mass spectrometry, electrophoresis, N-terminal sequencing and in-gel digestion to analyse the proteins in these two snake venoms. Results: We identified eight proteins in G. blomhoffii venom and four proteins in A. acutus venom. The proteins detected in G. blomhoffii and A. acutus venoms were phospholipase A₂, snake venom metalloproteinase and cysteine-rich secretory protein. Snake C-type lectin (snaclec) was unique to A. acutus venom. Conclusion: These data will contribute to the current knowledge of proteins present in the venoms of viper snakes and provide useful information for investigating their therapeutic potential.

• Genomics & Informatics
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• v.19 no.1
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• pp.2.1-2.10
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• 2021

BRAF inhibitors (e.g., vemurafenib) are widely used to treat metastatic melanoma with the BRAF V600E mutation. The initial response is often dramatic, but treatment resistance leads to disease progression in the majority of cases. Although secondary mutations in the mitogen-activated protein kinase signaling pathway are known to be responsible for this phenomenon, the molecular mechanisms governing acquired resistance are not known in more than half of patients. Here we report a genome- and transcriptome-wide study investigating the molecular mechanisms of acquired resistance to BRAF inhibitors. A microfluidic chip with a concentration gradient of vemurafenib was utilized to rapidly obtain therapy-resistant clones from two melanoma cell lines with the BRAF V600E mutation (A375 and SK-MEL-28). Exome and transcriptome data were produced from 13 resistant clones and analyzed to identify secondary mutations and gene expression changes. Various mechanisms, including phenotype switching and metabolic reprogramming, have been determined to contribute to resistance development differently for each clone. The roles of microphthalmia-associated transcription factor, the master transcription factor in melanocyte differentiation/dedifferentiation, were highlighted in terms of phenotype switching. Our study provides an omics-based comprehensive overview of the molecular mechanisms governing acquired resistance to BRAF inhibitor therapy.

• Journal of agriculture & life science
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• v.53 no.1
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• pp.117-126
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• 2019

This paper presents an experiment to examine the possibility of treating carcass while making compost with a horizontal cylinder composting equipment. The findings were as follows: as for heavy metal content, zinc content was above the allowed level in some measuring sections of the general operation and the entire measuring sections of the carcass operation, whose copper content was higher than the general operation. The wood chip operation was lower than the allowed level in all the heavy metals and similar or the same as the carcass operation in copper, cadmium and arsenic. Its nickel content was 29.5~63.8%, which was relatively higher than 9.3~18.0% and 15.8~18.0% of the general and carcass operation, respectively. Its chrome content was 14.2~31.9%, which was relatively higher than that of the general and carcass operation. The integrated operation was lower than the allowed level in all the heavy metals. Its copper and zinc content was 34.9~54.5% and 53.1~75.9%, which was similar to 48.9~52.6% and 64.6~85.9%, respectively, in the wood chip operation. Its chrome and nickel content was stabilized while their content was rather high in the wood chip operation. The average and final moisture content of the carcass operation was 60.7% and 49.6%, respectively. Its average moisture content was a little bit higher than the recommended level of 55.0%, but its final moisture content was lower than the recommended level. The average and final moisture content of the integrated operation was 29.2% and 18.6%, respectively, which was the lowest level among the four operation modes. The overall moisture content of the operation modes was under the recommended level of 55.0% with some variance among the modes. The C/N ratio was the lowest in the carcass operation and the highest in the general operation. The average C/N ratio of the operation modes was in the range of 13.7~20.3 with the total average of 18.3, and the modes kept it under the proper level of 30.0.

• Asian-Australasian Journal of Animal Sciences
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• v.27 no.10
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• pp.1381-1386
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• 2014

In spite of variation in coat color, size, and production traits among indigenous Bangladeshi cattle populations, genetic differences among most of the populations have not been investigated or exploited. In this study, we used a high-density bovine single nucleotide polymorphism (SNP) 80K Bead Chip derived from Bos indicus breeds to assess genetic diversity and population structure of 2 Bangladeshi zebu cattle populations (red Chittagong, n = 28 and non-descript deshi, n = 28) and a semi-domesticated population (gayal, n = 17). Overall, 95% and 58% of the total SNPs (69,804) showed polymorphisms in the zebu and gayal populations, respectively. Similarly, the average minor allele frequency value was as high 0.29 in zebu and as low as 0.09 in gayal. The mean expected heterozygosity varied from $0.42{\pm}0.14$ in zebu to $0.148{\pm}0.14$ in gayal with significant heterozygosity deficiency of 0.06 ($F_{IS}$) in the latter. Coancestry estimations revealed that the two zebu populations are weakly differentiated, with over 99% of the total genetic variation retained within populations and less than 1% accounted for between populations. Conversely, strong genetic differentiation ($F_{ST}=0.33$) was observed between zebu and gayal populations. Results of population structure and principal component analyses suggest that gayal is distinct from Bos indicus and that the two zebu populations were weakly structured. This study provides basic information about the genetic diversity and structure of Bangladeshi cattle and the semi-domesticated gayal population that can be used for future appraisal of breed utilization and management strategies.

• New & Renewable Energy
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• v.9 no.4
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• pp.40-50
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• 2013

This study was performed to investigate the potential of torrefied tulip tree (TT) for the production of pellets. For this purpose, chemical composition and fuel characteristics of torrefied TT were examined. In addition, pellets were fabricated by using sawdust of torrefied TT chip, and durability of the pellet was measured. Lignin content of torrefied TT was higher than that of non-torrefied TT, and increased with the increases of torrefaction temperature and time. Fuel characteristics of torrefied TT were affected by torrefied conditions, and the characteristics were influenced more by torrefaction temperature than by torrefaction time. Higher heating value (HHV) and ash content (AC) of torrefied tulip tree increased with increasing torrefaction temperature, and the values were much higher than HHV and AC values of non-torrefied TT. Durability of pellets fabricated with $230^{\circ}C$- and $250^{\circ}C$-torrefied TT was higher than that of $270^{\circ}C$-torrefied TT, and the value exceeded the minimum requirement (-97.50%) of the 1st-grade pellet standard designated by Korea Forest Research Institute. Based on the results, torrefaction treatment of $250^{\circ}C/50min$ to TT might be a optimal condition for the production of TT pellets considering the mass balance and fuel characteristics of TT as well as the durability of the pellets. Thus, it is confirmed that torrefied TT can be used as a raw material for the production of bio-pellets.

• Journal of the Institute of Electronics and Information Engineers
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• v.50 no.11
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• pp.130-137
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• 2013

This paper presents analog front-end(AFE) circuits for bio-potential measurement. The proposed AFE is composed of IA(instrument amplifier), BPF(band-pass filter), VGA(variable gain amplifier) and SAR(successive approximation register) type ADC. The low gm(LGM) circuits with current division technique and Miller capacitance with high gain amplifier enable IA to implement on-chip AC-coupling without external passive components. Spilt capacitor array with capacitor division technique and asynchronous control make the 12-b ADC with low power consumption and small die area. The total current consumption of proposed AFE is 6.3uA at 1.8V.

• Proceedings of the KSME Conference
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• 2004.11a
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• pp.1540-1545
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• 2004

Measurement of concentration fields in a micro-channel is the crucial technology in the area of Lab-on-a-chip to be used for various bio-chemical applications. It is wel-known that the only possible way to measure the concentration field in the micro-channel is using micro-LIF(Laser Induced Fluorescence) method. However, an accurate concentration field at a given cross plane in a micro-channel has not been made so far due to the limit of light illumination. The present study demonstrates a novel method to provide an ultra thin laser sheet beam having 5 microns thickness by a micro focus laser line generator. Nile Blue A was used as fluorescent dye for LIF measurement. The laser sheet beam illuminates an exact plane of concentration measurement in the micro-channel to increase the signal to noise ratio and reduce the depth uncertainty considerably.