• Title/Summary/Keyword: Bio - Structure

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Heme proton resonances assignments based on nuclear Overhauser effect

  • Li, Chun-Ri;Kim, So-Sun;Lu, Ming;Park, Jang-Su
    • Journal of the Korean Magnetic Resonance Society
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    • v.11 no.1
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    • pp.48-55
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    • 2007
  • NMR signals of two hemes were assigned to particular hemes in the crystal structures by nuclear Overhauser effect experiments. The results showed that the hemes with the highest and lowest redox potentials in the one-electron reduction process correspond to the hemes I and IV in the crystal structure.

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Complete Assignments of the 1H and 13C NMR Data of Flavone Derivatives

  • Moon, Byoung-Ho;Lee, Young-Shim;Shin, Choon-Shik;Lim, Yoong-Ho
    • Bulletin of the Korean Chemical Society
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    • v.26 no.4
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    • pp.603-608
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    • 2005
  • The $^1H\;and\;^{13}C$ chemical shifts of flavone and its five derivatives were determined completely using the basic 1D and 2D NMR experiments and molecular modeling. Of the six compounds used for our experiments, the NMR data of three compounds were published previously, but we found that the data of two compounds included wrong assignments. Therefore, we report the corrected data and the complete assignments of NMR data of the other three compounds.

Molecular Design of New Organic Electroluminescence Materials: DCM Derivatives

  • Seong, See-Yearl;Park, Sung-Soo;Seo, Jeong-In;No, Kyoung-Tai;Hong, Jong-In;Park, Su-Jin;Choi, Seung-Hoon;Lee, Han-Yong
    • 한국정보디스플레이학회:학술대회논문집
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    • 2003.07a
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    • pp.178-180
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    • 2003
  • We performed semiempirical (AMl and ZINDO) and ab initio (HF and DFT) calculations, to investigate molecular structures and optical properties of DCM and its derivatives. DCM and its derivatives are used as a red fluorescent dopant of the organic electroluminescent host materials, $Alq_3$. We have studied the relationship between the molecular structure and the optical properties of these molecules for the improvement of EL efficiencies. Wavelength at the absorption maximum was found to be red-shifted when the molecule is substituted with both strong electron donating and withdrawing functional groups. A new red fluorescent dye was predicted by QSPR study based on calculations and experimental data.

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Analysis of Resonance Based Micromechanical Bio-Chemical Sensing Structures (공진 기반 마이크로기계 생화학 센싱 구조물의 해석)

  • Yeo, Min-Ku;Shin, Yoon-Hyuck;Yim, Hong-Jae;Lim, Si-Hyung
    • Proceedings of the KSME Conference
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    • 2008.11a
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    • pp.1767-1772
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    • 2008
  • A microcantilever is a well-known MEMS structure for sensing bio-chemical molecules. When bio-chemical molecules are adsorbed on the microcantilever's surface, resonance frequency shift is generated. There are two issues in this phenomena. The first one is which one between mass change and surface stress change effects is more dominant on the resonance frequency shift. The second one is what will be the performance change when the boundary condition is changed from cantilevers to double clamped beams. We have studied the effect of surface stress change and compared it with that of mass change by using FEM analysis. Furthermore, for microstructures having different boundary conditions, we have studied Q-factor, which determines the detection limit of micro/nano mechanical sensors.

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Design and Implementation of Flexible Sensor to Measure Mechanical Stiffness of Soft Particles (Soft Particle의 강성 측정을 위한 단순한 구조의 유연 물질 센서의 개발)

  • Ihn, Yong Seok;Yang, Minho;Koo, Ja Choon
    • The Journal of Korea Robotics Society
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    • v.11 no.3
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    • pp.133-139
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    • 2016
  • Increasing interest of human health, building bio-database (Bio DB) has been become a hot issue in life science. Consequently, Single Cell Analysis (SCA) which can explain biodiversity of lives has been a significant factor for building Bio DB. In numerous studies from these analyses, they have been showed that mechanical properties of cells can serve explanation of biological heterogeneity and criterion of disease states. Therefore, measuring mechanical properties of cells have great potential to be used in bio-medical applications. However, traditionally, many researchers have undergone difficult and time consuming work because handling small sized cells usually requires high-skilled technique. Thus, this paper shows robotized stiffness measurement technique using fixed ended beam sensor, precision motorized stage and substrate which have wall structure.

Antifungal Activity of Streptomyces sp. Against Puccinia recondita Causing Wheat Leaf Rust

  • Yi, Yong-Sub;Kim, Seung-Hyun;Kim, Min-Woo;Choi, Gyung-Ja;Cho, Kwang-Yun;Song, Jae-Kyeong;Lim, Yoong-Ho
    • Journal of Microbiology and Biotechnology
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    • v.14 no.2
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    • pp.422-425
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    • 2004
  • To discover a potent strain against wheat leaf rust, soil samples collected from Ilgamho, Seoul, Korea were tested in vivo and a strain belonging to Streptomyces sp. was found to show good antifungal activity when fermented in a broth. The identification of the strain was carried out based on 16S rDNA analysis, and the active compound was separated from the fermented broth. Even though its structure was not determined completely, the authors report the results obtained so far indicate that the fermented broth of the strain showed activity against wheat leaf rust. Therefore, we propose that this may be a potential novel strain showing antifangal activity against Puccinia recondita.

Studies on Benzofuran-7-carboxamides as Poly(ADP-ribose) Polymerase-1 (PARP-1) Inhibitors

  • Lee, Sun-Kyung;Yi, Kyu-Yang;Lee, Byung-Ho;Oh, Kwang-Seok
    • Bulletin of the Korean Chemical Society
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    • v.33 no.4
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    • pp.1147-1153
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    • 2012
  • Benzofuran-7-carboxamide was identified as a novel scaffold of poly(ADP-ribose) polymerase-1 (PARP-1) inhibitor. A series of compounds with various 2-substituents including (tertiary amino)methyl moieties substituted with aryl ring and aryl groups containing tertiary amines, were synthesized and biologically evaluated to elucidate the structure-activity relationships and optimize the potency. 2-[4-(Pyrrolidin-1-ylmethyl)phenyl]-benzofuran-7-carboxamide (42) was the most potent as an IC50 value of 40 nM among those.

Relationships Between the Larval Growth Inhibition of Caenorhabditis elegans by Apigenin Derivatives and Their Structures

  • Yoon, Young-Ah;Kim, Ho-Jung;Lim, Yoong-Ho;Shim, Yhong-Hee
    • Archives of Pharmacal Research
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    • v.29 no.7
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    • pp.582-586
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    • 2006
  • Due to consumer reluctance to take synthetic drugs for nematode infections and the appearance of resistance to anthelminthic drugs, new drugs from natural products must be developed. Caenorhabditis elegans is one of the freely living nematodes and serves as a good model system for screening anthelminthic drugs. In this study, thirteen flavonoid derivatives were tested for anthelminthic activity and the relationships between their activities and structures were investigated. The structural information combined with the data for the larval growth inhibition of C. elegans provided meaningful structural insights in the search for new anthelminthic drugs.

The complete chloroplast genome of Glycyrrhiza uralensis Fisch. isolated in Korea (Fabaceae)

  • KIM, Mi-Hee;PARK, Suhyeon;LEE, Junho;BAEK, Jinwook;PARK, Jongsun;LEE, Gun Woong
    • Korean Journal of Plant Taxonomy
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    • v.51 no.4
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    • pp.353-362
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    • 2021
  • The chloroplast genome of Glycyrrhiza uralensis Fisch was sequenced to investigate intraspecific variations on the chloroplast genome. Its length is 127,689 bp long (34.3% GC ratio) with atypical structure of chloroplast genome, which is congruent to those of Glycyrrhiza genus. It includes 110 genes (76 protein-coding genes, four rRNAs, and 30 tRNAs). Intronic region of ndhA presented the highest nucleotide diversity based on the six G. uralenesis chloroplast genomes. A total of 150 single nucleotide polymorphisms and 10 insertion and deletion (INDEL) regions were identified from the six G. uralensis chloroplast genomes. Phylogenetic trees show that the six chloroplast genomes of G. uralensis formed the two clades, requiring additional studies to understand it.

Metaproteomics in Microbial Ecology (메타프로테오믹스의 미생물생태학적 응용)

  • Kim, Jong-Shik;Woo, Jung-Hee;Kim, Jun-Tae;Park, Nyun-Ho;Kim, Choong-Gon
    • Korean Journal of Microbiology
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    • v.46 no.1
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    • pp.1-8
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    • 2010
  • New technologies are providing unprecedented knowledge into microbial community structure and functions. Even though nucleic acid based approaches provide a lot of information, metaproteomics could provide a high-resolution representation of genotypic and phenotypic traits of distinct microbial communities. Analyzing the metagenome from different microbial ecosystems, metaproteomics has been applied to seawater, human guts, activated sludge, acid mine drainage biofilm, and soil. Although these studies employed different approaches, they elucidated that metaproteomics could provide a link among microbial community structure, function, physiology, interaction, ecology, and evolution. These approaches are reviewed here to help gain insights into the function of microbial community in ecosystems.