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Transcriptome profiling and identification of functional genes involved in H2S response in grapevine tissue cultured plantlets

  • Ma, Qian;Yang, Jingli
    • Genes and Genomics
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    • 제40권12호
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    • pp.1287-1300
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    • 2018
  • Hydrogen sulfide ($H_2S$), a small bioactive gas, has been proved functioning in plant growth and development as well as alleviation of abiotic stresses, which including promoting seed germination, accelerating embryonic root growth, regulating flower senescence, inducing stomatal closure, and defending drought, heat, heavy metals and osmotic stresses etc. However, the molecular functioning mechanism of $H_2S$ was still unclear. The primary objective of this research was to analyze the transcriptional differences and functional genes involved in the $H_2S$ responses. In details, 4-week-old plantlets in tissue culture of grapevine (Vitis vinifera L.) cultivar 'Zuoyouhong' were sprayed with 0.1 mM NaHS for 12 h, and then transcriptome sequencing and qRT-PCR analysis were used to study the transcriptional differences and functional genes involved in the $H_2S$ responses. Our results indicated that 650 genes were differentially expressed after $H_2S$ treatment, in which 224 genes were up-regulated and 426 genes were down-regulated. The GO enrichment analysis and KEGG enrichment analysis results indicated that the up-regulated genes after $H_2S$ treatment focused on carbon metabolism, biosynthesis of amino acids, and glycolysis/gluconeogenesis, and the down-regulated genes were mainly in metabolic pathways, biosynthesis of secondary metabolites, and plant hormone signal transduction. Analyzing the transcription factor coding genes in details, it was indicated that 10 AP2/EREBPs, 5 NACs, 3 WRKYs, 3 MYBs, and 2 bHLHs etc. transcription factor coding genes were up-regulated, while 4 MYBs, 3 OFPs, 3 bHLHs, 2 AP2/EREBPs, 2 HBs etc. transcription factor coding genes were down-regulated. Taken together, $H_2S$ increased the productions in secondary metabolites and a variety of defensive compounds to improve plant development and abiotic resistance, and extend fruits postharvest shelf life by regulating the expression of AP2/EREBPs, WRKYs, MYBs, CABs, GRIP22, FERRITINs, TPSs, UGTs, and GHs etc.

국내 감초 신품종의 급성 췌장염 보호 효과 (Protective Effect of Glycyrrhiza New Domestic Variety on the Acute Pancreatitis)

  • 김동구;민경현
    • 한국자원식물학회지
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    • 제36권4호
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    • pp.282-289
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    • 2023
  • 본 연구를 통해 국내 감초 신품종인 G. korshinskyi Grig.가 cerulein으로 유도한 생쥐의 급성 췌장염시 증가하는 염증성 세포의 유입과 혈청 소화효소(Amylase, Lipase) 수치를 유의하게 억제함으로써 급성 췌장염에 대한 보호 효과를 나타낸다는 것을 알 수 있었다. 이를 통해 급성 췌장염을 예방할 수 있는 의약품 소재로써 국내 감초 신품종의 가능성을 제기한다는 데 의의가 있지만, 치료 효과로써의 효능 및 억제 기전에 대한 보완연구가 뒷받침되어야 할 필요가 있다고 판단된다.

Roots Extract of Adenophora triphylla var. japonica Inhibits Adipogenesis in 3T3-L1 Cells through the Downregulation of IRS1

  • Kim, Hae Lim;Lee, Hae Jin;Choi, Bong-Keun;Park, Sung-Bum;Woo, Sung Min;Lee, Dong-Ryung
    • 동의생리병리학회지
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    • 제34권3호
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    • pp.136-141
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    • 2020
  • The purpose of this study was to investigate the action mechanism of the roots of Adenophora triphylla var. japonica extract (ATE) in 3T3-L1 adipocytes. Cell toxicity test by MTT assay and lipid accumulation was performed to evaluate the inhibitory effect on the differentiation of adipocyte from preadipocytes induced by MDI differentiation medium, while adipogenesis related proteins expression level were evaluated by western blotting. As a result, ATE inhibited MDI-induced adipocyte differentiation in 3T3-L1 cells dose-dependently without cytotoxicity. Our results showed that ATE inhibited the phosphorylation of IRS1, thereby decreasing the expression of PI3K110α and reducing the phosphorylation of AKT and mTOR, resulting in attenuated protein expression of C/EBPα, PPARγ, ap2 and FAS in 3T3-L1 cells. These results suggest anti-adipogenic functions for ATE, and identified IRS1 as a novel target for ATE in adipogenesis.

항진균물질을 생합성하는 Pseudomonas aeruginosa의 배양생리적 특성 연구 (Fermentation Studies on Pseudomonas aeruginosa Producing Antifungal Secondary Metabolite, PAFS.)

  • 송성기;윤권상;정용섭;전계택
    • 한국미생물·생명공학회지
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    • 제32권1호
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    • pp.52-59
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    • 2004
  • Fructose와 galactose를 배지에 동시에 사용하였을 때 catabolite repression에 의한 PAFS생산성 저해 현상을 극복하기 위해서 본 연구에서는 두 가지 탄소원의 공급량과 유속을 달리하는 유가식 배양으로 PAFS 생산성을 향상시키고자 하였다. 또한 통계적으로 성공률이 매우 높다고 밝혀진 실험방법에 의해 모균주로부터 고생산변이주를 선별하여 생산성이 가장 우수한 것으로 판명된 AP-20 균주를 생물반응기를 이용한 회분식 배양 및 유가식 배양 실험에 이용하였다. 생물반응기에서의 유가식 배양이 회분식 배양에서보다 PAFS생산성이 약 4배 이상 향상되었음을 확인할 수 있었다. 또한 생산균주의 배양생리학적 특성으로서 Pseudomonas aeruginosa는 galactose를 이용해서 세포성장과 이차대사산물 생합성과 관련된 유전자의 발현을 하고 fructose를 이용하여 PAFS를 생합성하는 것으로 추론되며, 너무 느린 탄소원의 공급은 세포성장에 제한요소로 작용하여 이차대사산물의 생합성을 저해하는 것으로 판단되었다. 한편 유가식 배양일지라도 배양 조건에 따라 그 생산성이 뚜렷이 차이가 나는 것으로 관찰되었다 즉 galactos의 초기량이 20g/L이고 fructose 30g/L를 0.032 mL/min의 속도로 공급했을 경우의 PAFS생산량을 100%로 정의했을 때, 초기부터 40 g/L의 galactose가 존재하고 20 g/L의 fructose를 0.032 mL/min의 속도로 공급한 경우에 PAFS생산성이 약 580%향상된 것으로 나타났다.

Growth Performance, Carcass Characteristics and Meat Yield of Boer Goats Fed Diets Containing Leaves or Whole Parts of Andrographis paniculata

  • Yusuf, A.L.;Goh, Y.M.;Samsudin, A.A.;Alimon, A.R.;Sazili, A.Q.
    • Asian-Australasian Journal of Animal Sciences
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    • 제27권4호
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    • pp.503-510
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    • 2014
  • The study was conducted to determine the effect of feeding diets containing Andrographis paniculata leaves (APL), whole Andrographis paniculata plant (APWP) and a control without Andrographis paniculata (AP0), on growth performance, carcass characteristics and meat yield of 24 intact Boer bucks. The results obtained indicated that inclusion of Andrographis paniculata significantly improved feed intake, weight gain, feed efficiency and live weight. The ratios of carcass to fat, lean to bone, lean to fat, and composition of meat were also improved. In addition, there were significant differences (p<0.05) between the dietary treatments in dressing percentage and chilling loss. Goats fed on AP0 (control) had significantly higher proportions of fat and bone, as well as thicker back fat than the supplemented animals (APL and APWP). Higher gut fill in animals fed Andrographis paniculata suggested slow rate of digestion, which could have improved utilization and absorption of nutrients by the animals. Goats fed Andrographis paniculata also produced higher meat yield and relatively lower fat contents (p<0.05).

한국어 자유 발화 음성의 억양 패턴 (Intonation Patterns of Korean Spontaneous Speech)

  • 김선희
    • 말소리와 음성과학
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    • 제1권4호
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    • pp.85-94
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    • 2009
  • This paper investigates the intonation patterns of Korean spontaneous speech through an analysis of four dialogues in the domain of travel planning. The speech corpus, which is a subset of spontaneous speech database recorded and distributed by ETRI, is labeled in APs and IPs based on K-ToBI system using Momel, an intonation stylization algorithm. It was found that unlike in English, a significant number of APs and IPs include hesitation lengthening, which is known to be a disfluency phenomenon due to speech planning. This paper also claims that the hesitation lengthening is different from the IP-final lengthening and that it should be categorized as a new category, as it greatly affects the intonation patterns of the language. Except for the fact that 19.09% of APs show hesitation lengthening, the spontaneous speech shows the same AP patterns as in read speech with higher frequency of falling patterns such as LHL in comparison with read speech which show more LH and LHLH patterns. The IP boundary tones of spontaneous speech, showing the same five patterns such as L%, HL%, LHL%, H%, LH% as in read speech, show higher frequency of rising patterns (H% and LH%) and contour tones (HL%, LH%, LHL%) while read speech on the contrary shows higher frequency of falling patterns and simple tones at the end of IPs.

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국내토양에서 분리한 혐기성 세균 Streptococcus sp. An-21-1 이 생성하는 항생물질 II. 항생물질을 생성하는 혐기성 세균의 발효 및 항생물질의 분리 정제 (Antibiotics produced by anaerobic fermentation of Streptococcus sp. An-21-1 isolated from domestic soil, Fermentation and purification of antibiotics from anaerobe)

  • 박승춘;윤효인;오태광
    • 대한수의학회지
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    • 제33권1호
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    • pp.61-69
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    • 1993
  • In order to search for new antibiotics from anaerobic bacteria, a large number of samples from domestic soil were collected and processed by apropriate methods. A potential strain, Streptococcus sp. An-21-1, was found to produce antimicrobial compounds. The Results were as follows; 1. During fermentation, the bacteria grew rapidly up to 20hr, thereafter entered the death phase. The optimal temperature and pH for the bacterial growth were $37^{\circ}C$ and pH 7.0, respectively. 2. Antibiotics were purified from culture broth by solvent extraction, silica gel column chromatography and Sepadex L.H 20 column. 3. Physicochemical properties of Ap-1 and Ap-2 were similar ; Their melting points were between $234-237^{\circ}C$. Color reactions of ninhydrin, 2,7-dichlorofluorescein, 4-dimethylaminobenzaldehyde, Dragendroffs reagent and 20% $H_2SO_4$, were positive. Therefore, we assumed that these antibiotics have amine group, immine group, alkaloid, and lipid components. These were stable to heat. UV spectrophotometry showed two peaks at 210 nm and 260 nm. From above results, we assumed these antibiotics are belong to the peptide antibiotic family.

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Zidovudine의 In Vitro 세포내 대사물의 측정을 통한 약효 검색법 개발 (In Vitro Determination of Intracellular Phosphorylated Metabolites of Antiviral Pyrimidine Analogs)

  • 한규원;김길수
    • Journal of Pharmaceutical Investigation
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    • 제32권4호
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    • pp.285-290
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    • 2002
  • In order to assay the efficacy of newly synthesized antiviral compounds, in vitro studies of their active intracellular phosphorylated metabolites were established as compared with Zidovudine (ZDV). Antiviral base analogs require intracellular phosphorylation prior to the inhibition of HIV replication. Therefore, antiviral drugs concentrations in plasma have not reflected any direct relationship with activity or toxicity. A method has been developed to measure the concentration of total phosphorylated metabolites inside peripheral blood mononuclear cells using modified commercial radioimmunoassay (RIA). ZDV 5'-monophosphate was synthesized and used as a procedural control for RIA modification. PBMCs were isolated from whole blood and incubated with ZDV for 20 h to allow metabolic phosphorylation. Viable cells were extracted overnight with 60% methanol. After evaporation, the extract was reconstituted in Tris buffer. Samples were split into two fractions, one of which was treated with alkaline phosphatase (AP) to liberate phosphate groups. Concentrations of phosphorylated metabolites were determined by subtracting thε concentration of non-AP-treated fraction from that of the treated fraction. Recovery of phosphorylated ZDV from cell extracts was approximately 90%, and reproducibility was acceptable (coefficients of variation <15% for concentrations${\geq}$0.25 ng/mL). Intracellular concentrations $(0.135{\sim}5.019\;nmole/10^6\;cells)$ followed a nonlinear dose-response relationship over the range $0.015{\sim}2.996mM$ extracellular ZDV, with concentration-dependant saturation.

Carnosine and Related Compounds Protect Against HOCI-Induced Damage of Biomolecules

  • Lee, Beom-Jun;Park, Jae-Hak;Lee, Yong-Soon;Cho, Myung-Haing
    • Toxicological Research
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    • 제15권1호
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    • pp.109-115
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    • 1999
  • The antiosidant activity of carnosine and related compounds such as anserine, homo-carnosine, histidine, and $\beta$-alanine which are found in most mammalian tissues, was investigated using hypochlorite (HOCl)-induced oxidant systems. Carnosine and related compounds were protective against HOCl-induced ascorbic acid oxidation, as determined by UV absorbance at 265nm. L-histidine was the most effective among them. The inhibitory effect of these compounds was strongly associated with a decrease in HOCl. It was also found that carnosine and related compounds significantly protected against the HOCl-mediated erythrocyte damage, as determined by hemoglobin release and gemolysis (p<0.05). Carnosine and anserine also inhibited of $\alpha$-antiprotease($\alpha$-AP) by HOCl, thereby inactivating porcine elastase. The inhibitory effect of carnosine on inactivation of $\alpha$-AP by HOCl depended on the concentration of carnosine and on the time preincubated with HOCl. Homocarnosine, histidine, and $\beta$-alanine did not inhibit the reaction. These results indicate that carnosine and related compounds can neutralize or scavenge HOCl. Thus, these compounds may play an important role in protecting against HOCl-mediated damage of biomolecules in vivo.

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초소형 고체 추진제 추력기의 내탄도 성능연구 (Internal Ballistic Analysis of Solid Propellant Micro-Thruster)

  • 양준서;이종광;권세진
    • 한국추진공학회:학술대회논문집
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    • 한국추진공학회 2007년도 제29회 추계학술대회논문집
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    • pp.215-218
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    • 2007
  • 고체추진제를 사용한 초소형 추력기의 내탄도 모델링과 성능예측에 관하여 기술하였으며, 특히 초소형화 되면서 고려해야하는 연소실 내의 열손실을 고려하였다. 추진제는 일반 HTPB-AP계열을 선택하였으며, 계산 모델은 간단한 1차원 축대칭 end-burner 모델로 정하였다. 연소실내의 화염에 노출되는 표면과 체적에 대한 비율을 변화시키면서 연소실 가스 온도, 압력, 추력을 계산하여 본 논문의 경우 열손실효과로 약 3%의 총역적 감소가 있음을 확인하였다.

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