• Journal of Marine Life Science
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• v.6 no.2
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• pp.47-57
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• 2021

In the fishery industry, global aquaculture production has stagnated due to overfishing of aquatic products, restrictions between countries, and climate change. The aquaculture suggests the possibility of a blue revolution that can be expanded in a new way. The aquaculture industry now accounts for more than half of the fishery products from the sea as a raw material for seafood for human consumption. Various latest biological research methods are being applied for the development of a sustainable aquaculture industry. Genomics has made significant progress in recent years. Since the genome sequence of Atlantic cod was sequenced in 2011, the genomes of more species have been sequenced. The genome information is providing a more robust and productive knowledge base for the aquaculture industry, including breeding and breeding of superior traits, improving disease resistance quality, and optimizing aquaculture feed and feed methods. This review looked at the status of genome analysis technology and the current status of genome research of aquaculture species. The development of genome research technology and massive genomic information is important in solving the challenges of the aquaculture industry and will help sustainable fisheries and aquaculture.

• Korean Journal of Ecology and Environment
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• v.54 no.4
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• pp.265-271
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• 2021

Intertidal mud crab (Macrophthalmus japonicus) is an organism with a hard chitinous exoskeleton and has function for an osmotic control in response to the salinity gradient of seawater. Crustacean exoskeletons change in their natural state in response to environmental factors, such as changes in the pH and water temperature, and the presence of pollutant substances and pathogen infection. In this study, the ecotoxicological effects of irgarol exposure and heavy metal distribution were presented by analyzing the surface roughness of the crab exoskeleton. The exoskeleton surface roughness and variation reduced in M. japonicus exposed to irgarol. In addition, it was confirmed that the surface roughness and variation were changed in the field M. japonicus crab according to the distribution of toxic heavy metals(Cd, Pb, Hg) in marine sediments. This change in the surface roughness of the exoskeleton represents a new end-point of the biological response of the crab according to external environmental stressors. This suggests that it may affect the functional aspects of exoskeleton protection, support, and transport. This approach can be utilized as a useful method for monitoring the aquatic environment as an integrated technology of mechanical engineering and biology.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.55 no.6
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• pp.827-835
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• 2022

Commercial boiled frozen ark shell Scapharca subcrenata (BFAS) is generally used as a seasoned seafood products. One problem facing the industry is that quality decreases during thawing. This study investigated ways to improve quality and shelf-stability of BFAS for use as a non-thermally prepared seasoned seafood products. The Viable bacteria were detected in BFAS after thawing under running water, but were not detected after blanching for over 2 min at 95±5℃. Blanching and dewatering times were optimized by response surface methodology (RSM) to reduce the initial number of bacteria and improve BFAS texture. Experimental design was deemed appropriate because no significant difference (P>0.05) was observed between predicted and actual moisture content, hardness, and overall acceptance values. Optimal blanching and dewatering times were 210 s and 80 s, respectively. Optimized blanching and dewatering processes can significantly improve safety and BAFS qualities including texture. These results indicate that BFAS demand as a staple for home meal replacements can be increased by application of optimized blanching and dewatering processes, especially in Korean seafood processing companies where running water thawing is common.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.285-293
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• 2022

Sampling gears for collecting fish are diverse, and the community of fish varies according to the selection and characteristics of the sampling gears. The present study compared the characteristics of fish communities in Yedang reservoir using four sampling gears (kick net, cast net, gill net, and fyke net). The kick net and cast net were inefficient in collecting the number of individuals. However, they increased the species diversity of fish inhabiting the waterfront. Although not many individuals were collected, the gill net mainly collected large fish. The largest number of individuals was collected in the fyke net, and the dominance was high due to the high species selectivity. Through Self-Organizing Map (SOM) analysis, large fish were collected in the gill net, whereas small fish were collected in the fyke net. The characteristics and efficiency of the fish differed depending on the sampling gears. It is expected that researchers will need to use it appropriately according to the characteristics of the sampling gears when investigating the fish community.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.376-389
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• 2022

Despite the consumption of disinfectants have been increased by COVID-19 pandemic, the fate of the chemicals in aquatic food webs are still unclear. In order to understand the trophic transfer of the chemicals, the concentration of disinfectants including six benzalkonium chloride (BACs) and five didecyldimethylammonium chlorides(DDACs) were measured at the Geum (2020), Han (2021), and Yeongsan River (2021), before and after rainfall. The highest concentration of ∑BACs (mainly C12 and C14) and ∑DDACs (mainly C10 and C14) were observed in the Han River, followed by Yeongsan River, Geum River Estuary, and Gapcheon. After rainfalls, both concentration and detection frequency were decreased in all sites. Although the BAC and DDAC seems to be accumulated in organisms, they were bio-diluted rather than magnified in the aquatic food web with the biomagnification factor(BMF) of less than 1, trophic magnification slope (TMS) from -0.236 to 0.001, and trophic magnification factor(TMF) from 0.85 to 1.01.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.330-340
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• 2022

We deduced the proper estimation methodology for the amount of carbon sequestration by damaged trees for Environmental Impact Assessment (EIA). The nine development projects related to renewable energy, damaged trees occur, assessment status and used method of evaluating the carbon storage of damaged trees were summarized. And after re-calculating the carbon storage of damaged trees through allometric equations, the difference between the two groups, re-calculated the damaged trees carbon storage and the damaged trees carbon storage in the report, was validated. As a result, damaged trees carbon storage in words was more than the re-calculated damaged trees carbon storage, and it was statistically significant (p<0.005). This result means that the existing method for calculating damaged tree carbon storage is overcalculated. It was judged that it was necessary to improve the calculation method. Therefore, allometric equations suitable for each dominated-tree species should be used when calculating the damaged tree carbon storage. Furthermore, we propose to establish a carbon storage calculation system based on actual data from the ecosystem so that researchers can efficiently and accurately the damaged trees carbon storage.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.368-375
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• 2022

Gut contents analysis is essential to predict the impact of organisms on food source changes due to variations of the habitat environment. Previous studies of gut content analysis have been conducted using traditional methods, such as visual observation. However, these studies are limited in analyzing food sources because of the digestive process in gut organ. DNA metabarcoding analysis is a useful method to analyze food sources by supplementing these limitations. We sampled marine fish of Pennahia argentata, Larimichthys polyactis, Crangon affinis, Loligo beka and Sepia officinalis from Gwangyang Bay and Yeosu fisheries market for analyzing gut contents by applying DNA metabarcoding analysis. 18S rRNA v9 primer was used for analyzing food source by DNA metabarcoding. Network and two-way clustering analyses characterized the relationship between organisms and food sources. As a result of comparing metabarcoding of gut contents for P. argentata between sampled from Gwangyang Bay and the fisheries market, fish and Copepoda were analyzed as common food sources. In addition, Decapoda and Copepoda were analyzed as common food sources for L. polyactis and C. affinis, respectively. Copepoda was analyzed as the primary food source for L. beka and S. officinalis. These study results demonstrated that gut contents analysis using DNA metabarcoding reflects diverse and detailed information of biological food sources in the aquatic environment. In addition, it will be possible to provide biological information in the gut to identify key food sources by applying it to the research on the food web in the ecosystem.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.352-359
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• 2022

Recently, with the development of genetic technology, interest in environmental DNA (eDNA) to study biodiversity according to molecular biological approaches is increasing. Environmental DNA has many advantages over traditional research methods for biological communities distributed in the environment but highly depends on the established base sequence database. This study conducted a comprehensive analysis of the habitat status and classification at the genus level, which is mainly used in eDNA (12S rRNA, 16S rRNA, 18S rRNA, COI, and CYTB), focusing on Korean registration taxon groups (phytoplankton, zooplankton, macroinvertebrates, and fish). As a result, phytoplankton and zooplankton showed the highest taxa proportion in 18S rRNA, and macroinvertebrates observed the highest ratio in the nucleotide sequence database in COI. In fish, all genes except 18S rRNA showed a high taxon ratio. Based on the Korean registration taxon group, the gene construction of the top 20 genera according to bio density observed that most of the phytoplankton were registered in 18S rRNA, and the most significant number of COI nucleotide sequences were established in macroinvertebrates. In addition, it was confirmed that there is a nucleotide sequence for the top 20 genera in 12S rRNA, 16S rRNA, and CYTB in fish. These results provided comprehensive information on the genes suitable for eDNA research for each taxon group.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.398-405
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• 2022

The research was based on long-term studies on the major physico-chemical and hydrological factors and zooplankton community dynamics in the Hwang River. We had 341 times survey and collected zooplankton samples in the Hwang River of mid-Nakdong River from 1995 to 2013. We identified 97 zooplankton species, including 77 rotifers, 16 cladocerans, and 4 copepods. The total zooplankton abundance and species diversity were shown distinctive temporal variation (ANOVA, p<0.001). Annual average of zooplankton population density was 58.4±3.2 ind L^-1 (n=341) and the lowest was 17.0±3.8 ind L^-1 (1996, n=20), while the highest was 151.5±32.3 ind L^-1 (2010, n=22). For zooplankton, small rotifer groups(e.g., Keratella sp., Brachionus sp., Trichotria sp.) dominated the study site for 19 years survey. Statistical analysis revealed that there were positive relationships with SiO₂ (p=0.002) and water level (p<0.001) for the high abundance of rotifer community. There were considerable variations both the total cladocerans population and the number of cladocerans' species concerning annual precipitation. Despite the appearance of various zooplankton in the Hwang River, the mean population density remained low. Due to the lateral structures in the Nakdong River, the downstream basin of the Hwang River is inevitably affected. The zooplankton community in our study site is considered to be mainly influenced by external factors that can stably increase and maintain the volume of the water body and internal factors that induce an increase in food sources through the inflow of nutrients into the water body.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.360-367
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• 2022

Research on food sources through DNA metabarcoding is being used for various organisms based on high resolution and reproducibility. In the study, we investigated the difference in food sources between pre and post-starving in the three bivalve species (Anemina acaeformis, Anodonta woodiana, and Unio douglasiae) through DNA metabarcoding using 18S rRNA V9 primer. The food source of pre-starving appeared in 87 genera, 71 families, 51 orders, 35 classes, and 22 phyla. The primary food sources were the zoo and phytoplankton, including Chlamydomonadales, Euglenales, Ploima, Sphaeropleales, and Stephanodiscales. However, all zoo and phytoplankton were not observed after starving except Schizopyrenida and Rotifera. In Levin's niche breadth analysis, the Bi index of A. woodiana is 0.3, which was higher than A. acaeformis(0.14) and U. douglasiae (0.21), indicating that they feed on various food sources. The niche overlap of A. acaeformis was measured as 0.78 in A. woodiana, 0.7 in U. douglasiae showing a relative high value compared to other bivalves. The trophic level of A. acaeformis, A. woodiana, and U. douglasiae based on the food source information were investigated as 2.0, 2.0, and 2.5, respectively. The results of the previous study on the trophic level using stable isotopes showed 1.8 to 2.4 values were similar to the results of this study. These results suggest that DNA metabarcoding can be an effective analyzing tool for the gut content in the bivalves.