• Title/Summary/Keyword: 선충망

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Identification of Caenorhabditis elegans microRNA target using a neural network (신경망을 이용한 예쁜 꼬마 선충 microRNA target 예측)

  • Lee, Wha-Jin;Zhang, Byoung-Tak
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2004.11a
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    • pp.150-157
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    • 2004
  • microRNA (miRNA)는 21-25 nucleotide (nt)의 single-stranded RNA 분자로서 mRNA의 3' untranslated region (3' UTR)에 상보적으로 결합하여 유전자 발현을 제어하는 새로운 조절물질이다. 지금까지 실험을 통해 수백 개의 miRNA가 알려져 있으나, miRNA에 의해 조절되는 target 유전자는 실험상의 어려움으로 아직까지 거의 알려지지 않았다. miRNA는 서열의 길이가 짧고 target과 느슨한 상보적 결합을 하기 때문에 기존의 서열 비교 방법으로 miRNA의 target을 찾는 것은 쉬운 일이 아니다. 본 논문은 신경망을 이용하여 Caenorhabditis elegans mRNA의 3' UTR에서 miRNA가 결합하는 영역을 예측하였다. 신경망은 복잡한 비선형 데이터를 잘 분리해내고 불완전하고 잡음이 많은 입력에 강하기 때문에 miRNA target 예측에 적합하다. miRNA와 mRNA의 결합 영역을 다양하게 분석하였고 민감도 0.59, 특수도 0.99의 성능을 갖는 신경망을 구현하였다. 신경망 입력 값을 달리하여 각각의 특성이 결과에 미치는 영향을 분석하였고 기존 예측 방법에 의한 결과와 비교하여 성능을 평가하였다.

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A Study on Providing Relative Keyword using The Social Network Analysis Technique in Academic Database (학술DB에서 SNA(Social Network Analysis) 기법을 이용한 연관검색어 제공방안 연구)

  • Kim, Kyoung-Yong;Seo, Jung-Yun;Seon, Choong-Nyoung
    • Annual Conference on Human and Language Technology
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    • 2011.10a
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    • pp.79-82
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    • 2011
  • 본 논문은 다양한 주제 분야의 연구 성과물을 제공하는 학술DB에서 주제어(Keyword) 정보를 바탕으로 SNA(Social Network Analysis)기법을 적용해 검색어와 연관도가 높은 연관검색어를 제공하는 것을 그 목적으로 한다. 이를 위해 주제어들 간의 가중치(Weight)를 계산한 뒤 Ego Network 분석을 통해 검색어와 연관된 연관주제어를 추출하고 이를 기존 학술DB에서 제공한 연관검색어와 비교 정리하였다. 그리고 정리된 결과를 연관규칙 마이닝기법, 유사계수를 적용해 연관도측면에서 비교 평가하였다.

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Distribution of Microflora and Mesofauna in the Forest Soils of Gwangneung Experimental Forest (광릉시험림 산림토양의 미생물상 및 중형동물상 분포)

  • Eo, Jinu;Park, Byung Bae;Park, Kee-choon;Chun, Jung Wha
    • Journal of Korean Society of Forest Science
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    • v.100 no.4
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    • pp.681-686
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    • 2011
  • The aim of this study was to investigate the distribution of soil biota across forest types and soil depths in Gwangneung Experimental Forest. We selected 5 sites, which are 3 deciduous- and 2 coniferous forests. The abundance of microflora in these areas was analyzed by the phospholipid fatty acid (PLFA) indicators, and the density of mesofauna was measured by the abundance of nematodes and microarthropods. The abundance of soil microflora was higher in the A layer than in the B layer based on the PLFA indicators, but there were no differences between deciduous and coniferous forests. Average density of nematodes was higher in the A horizon than in the B horizon. The density of fungivorous nematodes was higher in the deciduous forests. Mean densities of Collembola and Oribatida were 44% and 42% of microarthropods in soil samples, respectively. The results of microbial PLFA indicators were significantly correlated with the density of their consumers, which reflected that the food web in fungi- and bacteria-based soil developed in this forests. This study suggested that the distribution of soil organisms largely separated by soil depths and was slightly affected by the forest type in the Gwangneung Experimental Forest.

Gnawing and Escaping Behaviors of Monochamus alternatus (Coleoptera: Cerambycidae) in a Confined Environment: Suggesting a Bioassay Method of Netting for Adult Escape Prevention (인위적 구속환경에서 솔수염하늘소의 쏠기와 탈출행동: 성충탈출 방지용 그물망의 생물검정법 제안)

  • Ko, Gyeong hun;Kim, Dong-Soon
    • Korean journal of applied entomology
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    • v.56 no.2
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    • pp.187-193
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    • 2017
  • The Japanese pine sawyer, Monochamus alternatus Hope, is a representative vector of the pine wood nematode, Bursaphelenchus xylophilus, which causes wilting symptoms in pine trees. A control method using a net has been introduced, which is an alternative method to the fumigation for the control of dead pine trees by pine wilt disease. This study was carried out to investigate the factors that induce gnawing and escaping behaviors of M. alternatus. The behaviors were examined after M. alternatus adult was placed in a confined space at different temperatures. M. alternatus adults could escape through mesh net torn by gnawing when they were confined in a space of 30 mm or less in diameter. The success rate of escape was high at 20 to $30^{\circ}C$, and no adults escaped at $15^{\circ}C$. The enticement of M. alternatus adults by food didn't affect the success rate of escape. In the case of not being confined in a narrow space, the escaping hole could not be formed because the gnawing was not concentrated on one part. M. alternatus moved its body in a narrow space using the tarsus of middle and hind legs, and made an escape hole by concentrically gnawing the obstacle on the front side with mandible, and showed a behavior of getting out while supporting the body by supporting the front legs. The present results will be able to use as an important basic information for evaluating the performance of mesh net which confines M. alternatus adults and suggested by alternative method to fumigation technology.

Automatic Text Summarization based on Selective Copy mechanism against for Addressing OOV (미등록 어휘에 대한 선택적 복사를 적용한 문서 자동요약)

  • Lee, Tae-Seok;Seon, Choong-Nyoung;Jung, Youngim;Kang, Seung-Shik
    • Smart Media Journal
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    • v.8 no.2
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    • pp.58-65
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    • 2019
  • Automatic text summarization is a process of shortening a text document by either extraction or abstraction. The abstraction approach inspired by deep learning methods scaling to a large amount of document is applied in recent work. Abstractive text summarization involves utilizing pre-generated word embedding information. Low-frequent but salient words such as terminologies are seldom included to dictionaries, that are so called, out-of-vocabulary(OOV) problems. OOV deteriorates the performance of Encoder-Decoder model in neural network. In order to address OOV words in abstractive text summarization, we propose a copy mechanism to facilitate copying new words in the target document and generating summary sentences. Different from the previous studies, the proposed approach combines accurate pointing information and selective copy mechanism based on bidirectional RNN and bidirectional LSTM. In addition, neural network gate model to estimate the generation probability and the loss function to optimize the entire abstraction model has been applied. The dataset has been constructed from the collection of abstractions and titles of journal articles. Experimental results demonstrate that both ROUGE-1 (based on word recall) and ROUGE-L (employed longest common subsequence) of the proposed Encoding-Decoding model have been improved to 47.01 and 29.55, respectively.

Effects on Control of Pine Wilt Disease (Bursaphelenchus xylophilus) by Thinning Methods in Red Pine(Pinus densiflora) Forest (소나무림 숲가꾸기 종류가 소나무재선충병의 제어에 미치는 영향)

  • Jeon, Kwon-Seok;Kim, Chul-Su;Park, Nam-Chang;Hur, Tae-chul;Hong, Sung-Cheon
    • Journal of Korean Society of Forest Science
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    • v.100 no.2
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    • pp.165-171
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    • 2011
  • This study was conducted to investigate the effect on pine wilt disease by health-thinning, thinning and sapling tending in red pine forest (Pinus densiflora). As a part of developing forestry control methods for pine wilt disease control. In case of putting in pine sawyer (Monochamus alternatus) with pine wood nematode (Bursaphelenchus xylophilus), the specimen trees in health-thinning, thinning and control treatment were withered more than 50%, although there were not statistically significant differences in treatments. In treatment site, thinning slashes had influenced on the spread of pine wilt disease (experiment 1). In thinning stand of sapling pine, site with thinning slashes had highest mortality (> 90%). There were approximately 10% mortality in the site of carried thinning slashes from case and the site of non-thinning with released M. alternatus (experiment 2). The larvae had not appeared in young tree stump with health-thinning and thinning at April, the current emergence year of M. alternatus, but there were larvae in sapling tree stump with thinning at May, the current emergence year of M. alternatus. In case of stands with infected young and sapling tree by pine wilt disease, there is no effects of on pine wilt disease control by health-thinning, thinning, saplings tending at April and May, the current emergence year of M. alternatus, and leaved thinning slashes had influenced on the spread of pine wilt disease as habitation of M. alternatus.

Study of Minimum Passage Size of Subterranean Termites (Reticulitermes speratus kyushuensis) (국내 흰개미(Reticulitermes speratus kyushuensis)의 최소 통과 직경 연구)

  • Kim, Sihyun;Lee, Sangbin;Lim, Ikgyun
    • Korean Journal of Heritage: History & Science
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    • v.53 no.4
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    • pp.188-197
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    • 2020
  • Termites play an important role as decomposers of the forest ecosystem, while simultaneously causing enormous damage to wooden structures. Currently, two species of subterranean termites have been reported in Korea, and termite damage to historical wooden buildings is occurring nationwide due to climate change, forest fertility, and the locational characteristics of historical wooden buildings. Subterranean termites make their nests underground or inside timber. Termites move underground and access wooden structures through the lower parts of the buildings, adjacent to the ground. Once termites attack the wooden structures, it not only spoils the authenticity of cultural heritage structure, but also hampers structural stability due to the decrease in the strength of the material. Therefore, it is important to prevent termite damage before it occurs. Chemical treatments are mainly used in Korea to control and prevent the damage. In foreign countries, physical barriers are also used to prevent entry to wooden buildings, along with chemical treatments. Physical barriers involve installing nets or particles that termites cannot pass through in the lower part of the building, around the pipes, and between the edges of the building or exterior walls and interior materials. Advantages of a physical barrier are that it is an eco-friendly method, maintains long-term effect after installation, and does not require the use of chemical treatments. Prior to applying physical barriers, studies into the characteristics of termite species must be undertaken. In this study, we evaluated the minimum passage size that each caste of Reticulitermes speratus kyushuensis can move through. We found that workers, soldiers, and secondary reproductive termites were able to pass through diameters of 0.7mm, 0.9mm, and 1.1mm respectively. Head height of termites was an important factor in determining the minimum passing size. Results from the current study will be used as a basis to design the mesh size for physical barriers to prevent damage by termites in historical wooden buildings in Korea.