• KSBB Journal
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• v.26 no.6
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• pp.491-504
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• 2011

This review article provides an overview of the evolution of diphtheria vaccine, its value and its future. Diphtheria is an infectious illness caused by diphtheria toxin produced by pathogenic strains of Corynebacterium diphtheriae. It is characterized by a sore throat with membrane formation due to local tissue necrosis, which can lead to fatal airway obstruction; neural and cardiac damage are other common complications. Diphtheria vaccine was first brought to market in the 1920s, following the discovery that diphtheria toxin can be detoxified using formalin. However, conventional formalin-inactivated toxoid vaccines have some fundamental limitations. Innovative technologies and approaches with the potential to overcome these limitations are discussed in this paper. These include genetic inactivation of diphtheria toxoid, innovative vaccine delivery systems, new adjuvants (both TLR-independent and TLR-dependent adjuvants), and heat- and freeze-stable agents, as well as novel platforms for producing improved conventional vaccine, DNA vaccine, transcutaneous (microneedle-mediated) vaccine, oral vaccine and edible vaccine expressed in transgenic plants. These innovations target improvements in vaccine quality (efficacy, safety, stability and consistency), ease of use and/or thermal stability. Their successful development and use should help to increase global diphtheria vaccine coverage.

• Journal of the Korean Institute of Intelligent Systems
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• v.13 no.1
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• pp.37-44
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• 2003

In this paper, we investigated the performance of both DNA coding method and Genetic Algorithm(GA) in numeric pattern (from 0 to 9) recognition. The performance of the DNA coding method is compared to the that of the GA. GA searches effectively an optimal solution via the artificial evolution of individual group of binary string using binary coding, while DNA coding method uses four-type bases denoted by Adenine(A), Cytosine(C), Guanine(G) and Thymine(T). To compare the performance of both method, the same genetic operators(crossover and mutation) are applied and the probabilities of crossover and mutation are set the same values. The results show that the DNA coding method has better performance over GA. The reasons for this outstanding performance are multiple candidate solution presentation in one string and variable solution string length.

• The Korean Journal of Mycology
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• v.23 no.4 s.75
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• pp.310-317
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• 1995

The evolutionary relationships for 43 species in the taxa of the basidiomycetous yeast and related yeast-like fungi have been studied from the 43 18S rRNA partial sequences. Fibulobasidium inconspicuum showed a relatively close relationship to Filobasidiella neoformans. It is obvious that Tremella foliacea and Ustilogo rabenhorstiana form a independently different cluster from basidiomycetous yeast and seem to be phylogenetically distant from basidiomycetous yeast and each other. The basidiomycetous yeasts are believed more closely associated with Tremella foliacea than with Ustilago rabenhorstiana. The phenotypic criteria such as carotenoid pigments, teliospores, ballistospores seems not to be phylogenetically useful indicators.

• Resources Recycling
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• v.8 no.1
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• pp.37-43
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• 1999

Studies have been conducted for the purpose of using manganese nodule and residue remained after extracting valuable metals [mm it as the adsorbent of cadmium wastewater. The study observed the adsorption percentage according to initial cadmium concentration and interpreted each adsorption systems by applying the Freundlich, Langmuir, and Temkin isotherms. The adsorption amounts increased as the initial concentration at cadmium ion increased, whereas the adsorption percentage decreased. Linearity was shown when applied to the Freundlich and Langmuir isotherms. The k value which evaluates the adsorption capacity of adsorbent in Freundlich isotherm, turned out to be 11.72, the highest in case of manganese nodule. The Xm value, the maximum adsorption amount of the adsorbate that adsorbs as a monolayer in Langmuir isotherm of manganese nodule, was estimated as 0.16, representing higher value compared with those of leached residue, leached residue-raw manganese nodule mixture, and activated carbon.

• Korean Journal of Microbiology
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• v.55 no.2
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• pp.167-170
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• 2019

Pantoea intestinalis SRCM103226, isolated from edible insect mealworm overproduces zeaxanthin as a main carotenoid. The complete genome of P. intestinalis SRCM103226 was sequenced using the Pacific Biosciences (PacBio) RS II platform. The genome of P. intestinalis SRCM103226 comprises a 4,784,919 bp circular chromosome (53.41% G+C content), and is devoid of any extrachromosomal plasmids. Annotation using the RAST server reveals 4,332 coding sequences and 107 RNAs (22 rRNA genes, 85 tRNA genes). Genome annotation analysis revealed that it has five genes involved in the carotenoid pathway. The genome information provides fundamental knowledge for comparative genomics studies of the zeaxanthin pathway.

• Proceedings of the Plant Resources Society of Korea Conference
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• 2019.10a
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• pp.21-21
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• 2019

백양꽃(Lycoris koreana)이 속해 있는 상사화속(Lycoris)은 종간 잡종이 쉽게 일어나 많은 자연교잡종을 가지고 있어 식물의 종분화와 진화를 연구하는데 흥미로운 분류군이다. 그러나 이런 사유로 명백한 분류학적 차이가 있음에도 불구하고 대상종의 분류학적 위치의 설정에 문제가 발생되어 계급의 설정에 혼란을 가져오기도 한다. 특히 한국산 상사화속의 종 분류는 그동안 많은 형태학적, 분계학적, 화분학적, 세포학적, 분자생물학적 연구가 이루어져 있음에도 아직도 도감과 많은 문헌에서 오류와 오동정의 문제점을 가지고 있다. 특히 백양꽃에 대하여서는 Nakai에 의해 신종으로 설정된 이래 일본에 분포하는 동 속 식물과의 관계 분석의 오류로 계급의 설정에 현재까지 다양한 문제가 발생되고 있다. 백양꽃은 전라남도 백양산에 분포하고, 포가 자주색이고, 꽃의 크기가 작으며, 화사와 화주가 적색 또는 암적색인 특징으로 Nakai에 의해 신종으로 설정되었다. 이후 Nakai와 Lee는 L. koreana 가 한국에만 분포하는 것으로 보고 한국 특산종으로 취급하였다. 그러나 백양꽃의 실체에 대하여 많은 논의가 있었으나 Lee and Oh는 L. radiata로 동정하였고, Yang은 L. koreana는 한국에 분포하지 않고 L. sanguinea만이 분포하는 것으로 보고하였다. Koyama는 L. sanginea에 대하여 L. sanguinea와 L. kuishiana를 비교하여 수술이 화관 밖으로 돌출되어 있는 점 외에는 L. koreana와 차이가 없음을 들어 각각 L. sanguinea var. sanguinea, L. sanguinea var. kuishiana 그리고 L. sanguinea var. koreana로 재설정 하였고 이는 한국과 일본학자들에 의해서도 거의 받아들여지고 있으나 본 연구를 통하여 L. koreana의 종(species)으로의 계급 부여와 한국특산식물 설정의 타당한 결과를 도출하였다.

• Korean Journal of Plant Taxonomy
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• v.46 no.3
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• pp.314-325
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• 2016

Multiple changes of the photosynthesis pathway are independent evolutionary events occurring in the phylogeny of flowering plants, and such changes have occurred more than five times in Cyperaceae. In the tribe Cypereae, the C4 photosynthetic pathway appeared only once and is regarded as a synapomorphy of the C4 plants within this tribe. The morphological delimitation of genera within Cypereae does not correspond to their molecular phylogenetic relationships. In this study, the molecular phylogeny was compared with the photosynthetic pathways of Korean Cypereae (18 species of Cyperus, 1 species of Kyllinga, and 1 species of Lipocarpha). The photosynthetic pathways were determined by observing the leaf anatomy. The phylogenetic analysis was performed using three DNA regions (nrITS, rbcL, and trnL-F). According to the position of the photosynthetic tissue, 4 species (C. difformis, C. flaccidus, C. haspan, and C. tenuispica) and 16 species (14 Cyperus species, K. brevifolia var. leiolepis, and L. microcephala) were confirmed as C3 and C4 plants, respectively. Tribe Cypereae was divided into the CYPERUS and FICINIA clades, and all species of Korean Cypereae plants belonged to the CYPERUS clade in the phylogenetic analysis. Within the CYPERUS clade, C4 plants were monophyletic but their phylogenetic relationships were unclear. The genera Kyllinga and Lipocarpha were not supported as an independent genus in either case because they were nested by the Cyperus species in the molecular phylogenetic trees in the present and in previous studies. To determine the classification within the CYPERUS clade, a detailed morphological study and a molecular phylogenetic analysis at a high resolution will be necessary.

• Journal of Plant Biotechnology
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• v.42 no.4
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• pp.342-349
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• 2015

Kiwifruit is a new fruit crop that was commercialized in the late 1970s. Recently, its cultivation and consumption have increased rapidly worldwide. Kiwifruit is a dioecious, deciduous, and climbing plant having fruit with hairs and various flesh colors and a variation in ploidy level; however, the industry consists of very simple cultivars or genotypes. The need for efficient cultivar improvement together with the evolutional and biological perspectives based on unique plant characteristics, have recently encouraged genome analysis and bioinformatics application. The draft genome sequence and chloroplast genome sequence of kiwifruit were released in 2013 and 2015, respectively; and gene annotation has been in progress. Recently, transcriptome analysis has shifted from previous ESTs analysis to the RNA-seq platform for intensive exploration of controlled genetic expression and gene discovery involved in fruit ascorbic acid biosynthesis, flesh coloration, maturation, and vine bacterial canker tolerance. For improving conventional breeding efficiency, molecular marker development and genetic linkage map construction have advanced from basic approaches using RFLP, RAPD, and AFLP to the development of NGS-based SSR and SNP markers linked to agronomically important traits and the construction of highly saturated linkage maps. However, genome and transcriptome studies have been limited in Korea. In the near future, kiwifruit genome and transcriptome studies are expected to translate to the practical application of molecular breeding.

• Journal of Plant Biotechnology
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• v.50
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• pp.34-44
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• 2023

The tetraploid Solanum hjertingii, a wild tuber-bearing species from Mexico is a relative of potato, S. tuberosum. The species has been identified as a potential source of resistance to blackening for potato breeding. It does not exhibit enzymatic browning nor blackspot which are physiological disorders. However, due to their sexual incompatibility, somatic hybridization between S. hjertingii and S. tuberosum must be used to introduce various traits from this wild species into potato. After somatic hybridization, molecular markers are essential for selecting fusion products. In this study, the chloroplast genome of S. hjertingii was sequenced by next-generation sequencing technology and compared with those of other Solanum species to develop specific markers for S. hjertingii. The chloroplast genome has a total sequence length of 155,545 bp, and its size, gene content, order and orientation are similar to those of the other Solanum species. Phylogenic analysis including 15 other Solanaceae species grouped S. hjertingii with S. demissum, S. hougasii, and S. stoloniferum. After detailed comparisons of the chloroplast genome sequence with eight other Solanum species, we identified one InDel and seven SNPs specific to S. hjertingii. Based on these, five PCR-based markers were developed for discriminating S. hjertingii from other Solanum species. The results obtained in this study will aid in exploring the evolutionary aspects of Solanum species and accelerating breeding using S. hjertingii.

• Horticultural Science & Technology
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• v.34 no.2
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• pp.305-313
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• 2016

Brassica juncea (2n = 4x = 36, AABB genome, 1,068 Mb) is a U's triangle species and an amphidiploid derivative of B. rapa and B. nigra. Fifteen varieties were used to study the ITS (internal transcribed spacer) regions of ribosomal DNA and MITEs (miniature inverted-repeat transposable elements) with a view of developing specific molecular markers. ITSs and MITEs are an excellent resource for developing DNA markers for genomics and evolutionary studies because most of them are stably inherited and present in high copy numbers. The ITS (ITS1 and ITS2) sequence was compared with the consensus sequence of B. rapa and B. nigra. Variation in ITS1 created two separate groups among 15 varieties, with 10 varieties in one group and 5 in the other. Phylogenetic analysis revealed two major clusters for those 10 and 5 varieties. Among the 160 different MITE primers used to evaluate the selected 15 varieties of B. juncea, 70 were related to the Stowaway, 79 to the Tourist, 6 to the hAT, and 5 to the Mutator super-families of MITEs. Of 160 markers examined, 32 were found to be polymorphic when fifteen different varieties of B. juncea were evaluated. The variety 'Blackgat' was different from the other mustard varieties with respect to both phenotype and genotype. The diversity of 47 additional accessions could be verified using eight selected molecular markers derived from MITE family sequences. The polymorphic markers identified in this study can be used for varietal classification, variety protection, and other breeding purposes.