• Title/Summary/Keyword: 대사공학

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Text-mining Techniques for Metabolic Pathway Reconstruction (대사경로 재구축을 위한 텍스트 마이닝 기법)

  • Kwon, Hyuk-Ryul;Na, Jong-Hwa;Yoo, Jae-Soo;Cho, Wan-Sup
    • Journal of Korea Society of Industrial Information Systems
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    • v.12 no.4
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    • pp.138-147
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    • 2007
  • Metabolic pathway is a series of chemical reactions occuning within a cell and can be used for drug development and understanding of life phenomenon. Many biologists are trying to extract metabolic pathway information from huge literatures for their metabolic-circuit regulation study. We propose a text-mining technique based on the keyword and pattern. Proposed technique utilizes a web robot to collect huge papers and stores them into a local database. We use gene ontology to increase compound recognition rate and NCBI Tokenizer library to recognize useful information without compound destruction. Furthermore, we obtain useful sentence patterns representing metabolic pathway from papers and KEGG database. We have extracted 66 patterns in 20,000 documents for Glycosphingolipid species from KEGG, a representative metabolic database. We verify our system for nineteen compounds in Glycosphingolipid species. The result shows that the recall is 95.1%, the precision 96.3%, and the processing time 15 seconds. Proposed text mining system is expected to be used for metabolic pathway reconstruction.

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Acetoin Production Using Metabolically Engineered Klebsiella pneumoniae (대사공학으로 제작된 재조합 Klebsiella pneumoniae를 이용한 아세토인 생산)

  • Jang, Ji-Woong;Jung, Hwi-Min;Kim, Duck Gyun;Oh, Min-Kyu
    • Korean Chemical Engineering Research
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    • v.55 no.2
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    • pp.237-241
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    • 2017
  • Acetoin is variously applicable platform chemical in chemical and food industry. In this study, Klebsiella pneumoniae was engineered for acetoin production using metabolic engineering. From the recombinant Klebsiella pneumoniae (KMK-05) producing 2,3-butanediol, budC and dhaD genes encoding two 2,3-butanediol dehydrogenases were deleted to reduce 2,3-butanediol production. Furthermore, a transcriptional regulator, AcoK, was deleted to reduce the expression levels of acetoin degrading enzyme. Lastly, NADH oxidase was overexpressed for adjusting intracellular redox balance. The resulting strain (KJW-03-nox) produced considerable amount of acetoin, with concentration reaching 51 g/L with 2.6 g/L/h maximum productivity in 36 h fed-batch fermentation.

Biomechanics of Elliptical Trainer As an both Heat and Work - Related Experiment of a Fundamental Engineering Education : Energy Expenditure and Metabolic Cost (열과 일이 연관된 공학기초교육 실험으로써 Elliptical Trainers(ET) 생체역학 - 역학적 에너지 소비량 및 대사 소비량)

  • Hwang, Un-Hak
    • The Journal of Korean Institute for Practical Engineering Education
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    • v.2 no.1
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    • pp.146-153
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    • 2010
  • The physics theory applied to the elliptical health trainers can be a good example in engineering education. From the point of view of the physics education the measurement of mechanical and thermal energy expenditure in elliptical trainers can be related to the muscle activity, quantity of motion, and metabolic cost. We realized that the low speed training is effective for high basal metabolism due to increasing the muscle activity even if the high speed training is effective for training down. Elliptical Trainer may provide an effective oxygen exhaustion and thus effective training down. However, the metabolic cost does not have much relation to the amount of training under the high speed of trainer.

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Bioconversion of Methane: Current Technology and Prospect (메탄 바이오전환 기술의 현황과 전망)

  • Hwang, In Yeub;Lee, Eun Yeol
    • Prospectives of Industrial Chemistry
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    • v.19 no.2
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    • pp.28-35
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    • 2016
  • 천연가스, 셰일가스 및 바이오가스의 주성분인 메탄은 지구온난화 가스로, 감축대상인 동시에 차세대 탄소 자원으로 주목을 받고 있다. 기존의 화학적 메탄전환방법은 대규모 설비투자가 요구되는 규모의 경제가 적용되어 소규모 한계 가스전에는 활용이 어렵다. 이러한 문제점을 극복하기 위하여 최근에 생물학적 전환법이 대안으로 고려되고 있다. 메탄자화균은 메탄산화효소(methane monooxygenase)를 이용하여 상온 상압에서 메탄을 탄소원으로 사용하여 생장할 수 있다. 따라서 메탄자화균의 메탄 대사경로를 기반으로 대사공학을 활용하면 메탄으로부터의 다양한 종류의 고부가가치 산물 생산이 가능하다. 본고에서는 메탄자화균을 이용한 메탄의 바이오전환 기술의 현황 및 전망에 대하여 논의하였다.

Inhibition of Tyrosinase by Metabolites Originating from Thrichoderma atroviride (Thrichoderma atroviride 배양액의 tyrosinase 억제제에 관한 연구)

  • Kang, Dong Woo;Kim, Kyu-Min;Kim, Ye-Seong;Seo, Yu-Jin;Song, Da-Yeong;Oh, Da-Yun;Choi, Si-On;Hwang, Ju-Hyeon;Kim, Sam Woong;Bang, Kyu Ho;Gal, Sang Wan
    • Journal of Life Science
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    • v.31 no.1
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    • pp.47-51
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    • 2021
  • In today's society, functional whitening cosmetics are important to beauty. Fungi are known to produce a variety of whitening-related metabolites. In this study, we searched for tyrosinase inhibitors with metabolic products derived from Trichoderma atroviride supernatant in order to apply a material for whitening functional cosmetics. In addition, the inhibitory effect was compared to arbutin, which has already been approved as a whitening raw material by the Korea Ministry of Food and Drug Safety (KMFDS). The metabolites from the T. atroviride supernatant showed higher tyrosinase inhibitory activity than that of arbutin. Some of the tyrosinase inhibitors were stable to heat, whereas some were unstable. The heat unstable material was exhibited in the case of samples treated with little amounts, such as 0.02~0.2%. They were very unstable in acidic and alkali pHs, especially under acidic conditions. However, it was found that a weakly-acidic to neutral pH range was the optimal working pH, especially neutral pH. Since the activity of the inhibitory substances in the T. atroviride supernatant was maintained regardless of proteinase K treatment, it was assumed that the metabolites, but not the bioactive peptides, were involved in the activity. In summary, we propose that the metabolites derived from T. atroviride supernatant have strong potential as whitening raw material.

Flavonoid Biosynthesis: Biochemistry and Metabolic Engineering (Flavonoid 생합성:생화학과 대사공학적 응용)

  • Park, Jong-Sug;Kim, Jong-Bum;Kim, Kyung-Hwan;Ha, Sun-Hwa;Han, Bum-Soo;Kim, Yong-Hwan
    • Journal of Plant Biotechnology
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    • v.29 no.4
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    • pp.265-275
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    • 2002
  • Flavonoid biosynthesis is one of the most extensively studied areas in the secondary metabolism. Due to the study of flavonoid metabolism in diverse plant system, the pathways become the best characterized secondary metabolites and can be excellent targets for metabolic engineering. These flavonoid-derived secondary metabolites have been considerably divergent functional roles: floral pigment, anticancer, antiviral, antitoxin, and hepatoprotective. Three species have been significant for elucidating the flavonoid metabolism and isolating the genes controlling the flavonoid genes: maize (Zea mays), snapdragon (Antirrhinum majus) and petunia (Prtunia hybrida). Recently, many genes involved in biosynthesis of flavonoid have been isolated and characterized using mutation and recombinant DNA technologies including transposon tagging and T-DNA tagging which are novel approaches for the discovery of uncharacterized genes. Metabolic engineering of flavonoid biosynthesis was approached by sense or antisense manipulation of the genes related with flavonoid pathway, or by modified expression of regulatory genes. So, the use of a variety of experimental tools and metabolic engineering facilitated the characterization of the flavonoid metabolism. Here we review recent progresses in flavonoid metabolism: confirmation of genes, metabolic engineering, and applications in the industrial use.