• Korean Journal of Ichthyology
• /
• v.33 no.4
• /
• pp.205-216
• /
• 2021

Phylogenetic reconstruction based on one locus or a few loci can be misleading due to gene-tree/species-tree discordance. Species delimitation and intraspecific studies also often suffered from low resolution because of insufficient statistic power when few loci were used. Exon capture method is one of the most efficient way to collect genome-scale data, which can significantly augment studies that aimed to investigate patterns and histories of organisms at both intraspecific and high level. Here, I showed the advancement of shifting from single-gene method to genomic approach and the benefit of applying exon capture method comparing to alternative genomic techniques. Then, I explained the principle of exon capture method as well as providing detailed recommendations for applying this method. Finally, I demonstrated exon capture method using two applications and discussed future perspectives of this technology.

• Korean Journal of Environment and Ecology
• /
• v.28 no.4
• /
• pp.385-392
• /
• 2014

Quercus gilva Blume is an evergreen-leaved tree that belongs to Facaceae and grows in tropical and warm-temperate regions, such as Japan, Taiwan, China and Korea. This study was carried out to analyze the distribution and growth characteristics of Q. gilva in the native range. In Korea, this species was distributed in Jeju Island between 80 and 350 meter above sea level, and mainly in the south-western regions of the island from 100 to 200 meter above sea level. The average height of Q. gilva was $9.8{\pm}1.9$ meter, with most trees 9 and 12 meter tall. The average diameter at breast height was $22.6{\pm}6.8$ centimeter, with the majority between 20 and 30 centimeter. Several coppice shoots ($3.8{\pm}2.1$ pieces) were formed from stumps and inferred by frequent cuttings for use. Almost Q. gilva individuals(96.2%) were covered with kinds of vines(18 species), and evergreen Trachelospermim asiaticum (Siebold et Zucc.) Nakai was major species. The analysis of damage of vines revealed that the most dead branches were found with 9 to 12 meter height of Q. gilva, and the more vines attached, the larger damage to Q. gilva individuals. A continuous monitoring and investigation would be required to preserve this species in their habitats.

• Korean Journal of Environmental Biology
• /
• v.33 no.1
• /
• pp.19-26
• /
• 2015

Pre-monsoon dynamics of zooplankton community were investigated in the estuary of the Tamjin River flowing into the Doam Bay of the southern coast of Korea. Monthly sampling was carried out to collect zooplankters at five sites in the estuary and the river during the period between March and June 2014. Dissolved oxygen contents were low between $5.0{\sim}7.0mgL^{-1}$ in the estuary and high, 7.0~11.0, in the river. Water temperature increased gradually from 12.0 to $28.0^{\circ}C$ and pH fluctuated between the range 7.4~8.8, respectively. A total of 85 taxa consisted of 25 species of rotifer, 30 kinds of copepod, 8 species of cladoceran, six kinds of aquatic insect larvae, four kinds of decapod and two kinds of Cirripedia larvae and Polychaeta larvae and one kind of Amphipoda, Ispopoda, Appenidicularia, Nematoda and Cnidaria, and Nocticluca scintillans was occurred. Brackish copepods distributed at almost all studied sites with freshwater zooplankters being restricted to upper waters of the river. Monthly succession of Acartia spp. was observed in the estuary with the occurrence of A. hudsonica in March and April then A. omori in May and June. Zooplankton abundance showed to vary from 450 to $87,818ind\;m^{-3}$ due to the explosion of copepodite and copepod nauplius in the estuary. Species diversity indices varied between 0.6~2.3 and generally low in the estuary and high in the river. Sea water input into the river seems to affect the river biota for more than some kilometers of the upper waters of the Tamjin River.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
• /
• v.12 no.4
• /
• pp.359-369
• /
• 2007

Amoebophrya is an obligate endoparasitic eukaryotic dinoflagellate infecting host species and eventually killing them within a short period. Because of its host specificity and significant impacts on population dynamics of host species, it has long been proposed to be a potential biological agent for controlling harmful algal bloom (HAB). For several decades, the difficulties of culturing host - parasite systems have been a great obstacle to further research on the biology of Amoebophrya but recent success of several culture systems reactivates this research field. In this study, as a preliminary work for understanding the impacts of Amoebophrya on the population dynamics of host species, semimonthly occurrence of infected host dinoflagellates by Amoebophrya spp. had been observed in Jinhae Bay for two years and with a host - parasite system cultivated, host specificity of Amoebophrya spp. on several dinoflagellates was tested. Amoebophrya spp. were observed in the cellular organelle and cytoplasm of several species including Akashiwo sanguinea, Ceratium fusus, Dinophysis acuminata, Heterocapsa triquetra, Oblea sp., Prorocentrum minimum, P. triestinum, Scrippsiella spinifera, and S. trochoidea. Among them two host - parasite systems for an athecate dinoflagellate, A. sanguinea, and for a thecate dinoflagellate, H. triquetra, had been able to be successfully established as laboratary cultures. Cross-infection tests for 6 species of dinoflagellates in which Amoebophrya was observed or had been reported to exist confirmed high preference for host species of the parasite. Through the continuous research on Amoebophrya occurring in Korean coastal waters, we need to maintain various host - parasite culture systems, which will be very helpful for understanding its ecological role in marine food webs and for applying the species to biologically control harmful algal blooms.

• Korean Journal of Environment and Ecology
• /
• v.35 no.4
• /
• pp.316-335
• /
• 2021

This study reviewed the change of theory of ecological niche(concepts and definitions) over time to provide a theoretical basis for habitat-related studies of animals and plants. Accordingly, it analyzed and summarized the major discussion trends of ecological niche worldwide in each period from the 1900s to the present. Countries advanced in ecological studies, such as the EU and the USA, have conducted theoretical and empirical studies on the ecological niche since the early 1990s. The concept of the ecological niche was introduced in the early 1900s, developed in the mid-1900s, and advanced from the mid-1900s to the late 1900s. Since the 2000s, the advanced concept has diversified with new developments in technologies and research methods. The factors suggested by theoretical and empirical studies in defining the ecological niche of a species include 1) population dynamics of the target species, 2) all biotic conditions to sustain a population (food relationship and material flow in the food chain), 3) all non-biotic conditions to sustain a population (physical environmental conditions), 4) all direct and indirect interactions between these environmental factors, and 5) response and adaptation mechanisms that include the migratory ability of the target species or genetic diversity and adaptability to change. Unlike such international advancement, there have not been sufficient theoretical, philosophical, and empirical studies of ecological niche in Korea. The concepts and definitions by Greennell, Elton, and Hutchinson were selectively and partially borrowed for empirical studies without full description. Considering that the theory of ecological niche becomes the foundation for habitat-based species conservation and restoration, it is necessary to seek diversification and advancement of theoretical and empirical research and research methods and technological development. It will provide an important foundation for the academic advancement of ecology and for establishing and implementing policies to preserve and restore ecology and biodiversity effectively and successfully in Korea.

• Korean Journal of Environmental Biology
• /
• v.20 no.3
• /
• pp.256-262
• /
• 2002

This research investigated experimentally on the population growth in the aquatic microcosm with the wastewater of plating factory. The purpose of this study was to evaluate the effect of culture conditions of the characteristic growth pattern of the examined species. Population of the system is consists of three organisms; Chlorella vulgaris as a producer, Cyclidium glaucoma as a consumer and Pseudomonas putida as a decomposer. The different growth patterns of each population are followed by surfactant type; Especially C. glaucoma was sensitive, Ch. uvlgaris was maintained population size stably even at high level of surfactant and p. putida was not significantly affected. After treatment of waste water from plating factory, it began to be affected at 1.0% solution treatment to Ch. vulgaris which the cell number was decreased prominently after 2 days, and C. glaucoma was disappeared at 2.5% solution treatment. P. putida was showed increasing pattern according to treatment concentration, at 2.5% solution and population size grew double. The result from current microcosm study indicates that this model system can be applied to environmental assessment method for various pollutants.

• Korean Journal of Fisheries and Aquatic Sciences
• /
• v.18 no.3
• /
• pp.253-261
• /
• 1985

The reproduction of marbled sole Limanda yokohamae, caught near around the southeastern coast of Korea, from December 1983 to November 1984, was investigated based on such annual variations as gonadosomatic index(GSL), gametogenesis, reproductive cycle, spawning number, hepatosomatic index (HSI), and fatness. GSI began to increase in the autumn season with the onset of shorter day length and colder water temperature, and reached the maximum value in December with the shortest day length and the lowest temperature over the year. The gonad activated the proliferation of oogonia and spermatogonia in June, reached the mature stage in October, ripe in December, and spawning from the end of December to January. After spawning, it showed the resting stage which gonad remained regressive and suppressive from February to May. In addition, the adult individuals observed discharged eggs only once during their spawning period. At yolk globular stage, the substance of vitellogenin synthesized from the liver was considered to participate in the active yolk accumulation of oocytes. Marbled sole was concluded to be a typical winter spawning species in that such environmental factors as short day length and low water temperature were closely related with the gametogenesis, the stimulation of oocyte maturation, and were also affecting the ovulation.

• Korean Journal of Plant Resources
• /
• v.13 no.3
• /
• pp.227-242
• /
• 2000

Site characteristics, vegetation structure and dynamics of Kalopanax septemlobus forests in Mt. Heungjeong, Mt. Balwang and Mt. Gariwang were studied to provide the information need for national resources conservation and restoration of K. septemlobus forest in Gangwon-do of Korea. The K. septemlobus forests were distributed at 780m to 1,300m in altitude, steep slope, ridges-slope areas with facing northeast to northwest in good nutrition area. The annual diameter growth of those trees ranged 1.60mm to 2.41mm. Forty-three plots(20$\times$20m) were set up at three natural population of Kalopanax septemlobus forest and TWINSPAN method was used for vegetation structure analysis. The result of TWINSPAN ordination show that geographical features played a role in determining community types in the study areas. Community type of the study areas classified into three groups by TWINSPAN; K. septemlobus-Quercux mongolica- Acer mono community(Mt. Balwang), K. septemlobus-Q. mongolica- Tilia amurensis community(Mt. Heungjeong), K. septemlobus-Betula costata-Q. mongolica community(Mt. Gariwang). In most of the K. septemlobus forests, major woody species appeared predominantly were Q. mongolica, T. amurensis, Acer pseudo-sieboldianum, Lindera obtusiloba, A. mono, Magnolia sieboldii, Ulmus davidiana var. japonica. And also, Those species were surveyed in all the areas. Species diversity(H') of investigated areas ranged 0.3124~0.13992 and this value relatively higher than that of other forests with similar site. The range of similarity indices between surveyed areas was 64.1~64.54%. The distribution pattern of Morista's index show that Kalopanax septemlobus distributed randomly in tree and concentrated a few sample plots in subtree layer and shurb layer. K. septemlobus occupied 37.1~58.8% of tree layer story, 8.4~17.6% of subtree layer, 0~0.38% of shurb layer each surveyed area. The association analysis showed that Kalopanax septemlobus positively associated with Betula ermani, Deutzia glabrata, Carpinus cordata, Fraxinus mandshurica and negatively associated with Symplocos chinensis var. pilosa, Styrax obassia, Acer mono, Euonymus macroptera, Ulmus davidiana var. japonica. According to the diameter distribution of Kalopanax septemlobus community, the community of Mt. Gariwang will gradually decline and replaced by Quercus community. The communities of Mt. Heungjeong and Mt. Balwang has its seedlings and saplings, so it may be sustained.

• The Korean Journal of Malacology
• /
• v.15 no.1
• /
• pp.31-39
• /
• 1999

This study was aimed to describe the population dynamics and secondary production of Tapes philppinarum on Chohwa and Toksan tidal flats in Kwangyang Bay, from June 1994 to July 1995. The size distributions in shell length showed bimodal patterns from June 1994 to April 1995. Thereafter the distribution changed to the passage of time, indicating an increase in shell length. The mean densities decreased gradually with month. Chohwa A sustained highestdensity, followed by Chohwa B, Toksan C, and Toksan D. The recruitment of new year class occurred first on the upper tidal flat, and then moved to the lower tidal flat. The mean biomass in flesh dry weight of each year class increased in spring just before the spawning period, and thereafter decreased progressively. Annual mean biomass wasrecorded as 170.7 g m$\^$-2/ at Chohwa A, 220.7 g m$\^$-2/ at Chohwa B, 21.8 g m$\^$-2/ at Toksan C, and 45.2 g m$\^$-2/ at toksan D. Annual productions of Ruditapes philippinarum were estimated as 259.72 g m$\^$-2/ yr$\_$-1/ at Chohwa A, 359.79 g m$\^$-2/ yr$\_$-1/ at Chohwa B, 45.02 g m$\^$-2/ yr$\_$-1/ at Toksan c, 68.88 g m$\^$-2/ yr$\_$-1/ at Toksan D. Annual productions were much higher on Chohwa tidal flat than those on Toksan tidal flat. While P:B ratio were higher on Toksan tidal flat as 1.70 than those on Chohwa tidal flat as 1.58. In conclusion, the Chohwa tidal flat showed higher biomass and producion of Ruditapes philippinarum, whereas the Toksan tidal flat showed higher P:B ratio. The total amount of potential food might influence on the density, biomass nad produciton, whereas the amount of food and space per individual might influence on the growth rate and P:B ratio.

• Korean journal of applied entomology
• /
• v.61 no.3
• /
• pp.435-447
• /
• 2022

The soybean podborer, Matsumuraeses falcana (Lepidoptera: Tortricidae), is one of important pests in soybean crop. In the purpose of forecasting population dynamics of M. falcana, we investigated the effects of temperature on development of each life stage, adult longevity and fecundity of Matsumuraeses falcana at seven constant temperatures of 10, 13, 19, 22, 25, 28, and 31℃. Eggs hatched successfully at all temperature subjected. M. falcana developed from egg hatching to adult emergence at the tested temperatures except 10, 13, and 31℃. The developmental period of each life stage and adult longevity of M. falcana decreased as temperature increased. The lower developmental threshold (LDT) and thermal constant (K) from egg hatching to adult emergence of M. falcana were estimated by linear regression as 10.2℃ and 492.04DD, respectively. Lower and higher threshold temperature (TL and TH) were calculated by the Lobry-Rosso-Flandrois (LRF) and Sharpe-Schoolfield-Ikemoto (SSI) models. TL and TH from egg hatching to adult emergence using SSI model were 16.7℃ and 29.1℃. Thermal windows, i.e., the range in temperature between the minimum and maximum rate of development, of M. falcana was 12.4℃. We constructed the adult oviposition model of M. falcana using adult survivorship and fecundity. Temperature-dependent immature development and adult oviposition models will help constructing the population model of M. falcana and developing the strategies of integrated pest management in soybean fields.