• Proceedings of the Korea Information Processing Society Conference
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• 2002.04b
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• pp.1651-1654
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• 2002

이메일의 사용자가 인터넷 빠른 증가에 따라 기하급수적으로 늘어나고 있다. 또한 전자상거래에서 무수한 정보 서비스를 메일 시스템을 이용하여 제공할 때, 빠른 처리를 가능하게 하는 방법이 현안이 되고 있다. 이는 메일 관리 시스템의 SMTP 성능 향상이 이 현안의 핵심이라고 할 수 있는데, 본 연구에서는 전자상거래의 메일 내용의 특성을 고려하여 각각의 클라이언트에게 보내는 내용이 같은 항목 하에 일부 내용만이 바뀌는 수평적 유사성, 보내지는 폼의 전체적인 디자인의 변화나 회사의 정보가 변경되는 수직적 유사성의 특징을 이용한 메일 그룹핑(grouping) 방법을 제안한다.

• Proceedings of the KIEE Conference
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• 2007.07a
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• pp.1829-1830
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• 2007

인터넷의 발달로 대량의 전자문서들을 손쉽게 구할 수 있는 정보의 바다라 불리는 현대사회에서 논문 표절은 심각한 문제를 안게 되었다. 표절여부를 검사하는 방법에는 여러 가지가 있지만 보다 정확하고 빠르게 검출할 수 있는 기법이 요구된다. 외국에서는 표절을 검사하기 위한 시스템적인 접근이 이루어지고 있지만 국내에서의 표절 검사에 대한 연구는 아직 초기 단계에 있다. 본 논문에서는 논문 표절 검사 시스템에 사용되는 기법 중 지문법을 바탕으로 하지만 기존의 단어, 문장 등을 사용하는 방법과 차별을 두어 몇몇 주요 단어와 특정 조사의 비교를 이용해 유사성을 측정하여 보다 빠르고 정확하게 검출할 수 있는 시스템을 구현해 보았다.

• Korean Journal of Environmental Biology
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• v.41 no.4
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• pp.364-369
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• 2023

Two newly recorded sea stars, Henricia densispina (Sladen, 1879) and H. reniossa asiatica Djakonov, 1958, collected from the East Sea of Korea using fishing nets, were described in this study. Morphologically, H. densispina is characterized by the shape (sub-triangular) similarity of the intermarginal plates to the superomarginal plates. Henricia reniossa asiatica Djakonov, 1958, has long and slender arms (R/r=7.2-9.1); clustered abactinal paxillae with 3-13 abactinal spinelets; a denuded abactinal skeleton made up of crescentic, elongated cross-shaped, the presence of small ossicles that divided the papular areas; and an adambulacral armature comprised of 14-17 spinelets. This study provides the first occurrence of H. densispina and H. reniossa asiatica in the Korean fauna and a detailed morphological description of these species' key characteristics is provided.

• Journal of Microbiology and Biotechnology
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• v.30 no.6
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• pp.937-945
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• 2020

N-acyl-homoserine lactone (AHL)-mediated quorum sensing (QS) plays a major role in development of biofilms, which contribute to rise in infections and biofouling in water-related industries. Interference in QS, called quorum quenching (QQ), has recieved a lot of attention in recent years. Rhodococcus spp. are known to have prominent quorum quenching activity and in previous reports it was suggested that this genus possesses multiple QQ enzymes, but only one gene, qsdA, which encodes an AHL-lactonase belonging to phosphotriesterase family, has been identified. Therefore, we conducted a whole genome sequencing and analysis of Rhodococcus sp. BH4 isolated from a wastewater treatment plant. The sequencing revealed another gene encoding a QQ enzyme (named jydB) that exhibited a high AHL degrading activity. This QQ enzyme had a 46% amino acid sequence similarity with the AHL-lactonase (AidH) of Ochrobactrum sp. T63. HPLC analysis and AHL restoration experiments by acidification revealed that the jydB gene encodes an AHL-lactonase which shares the known characteristics of the α/β hydrolase family. Purified recombinant JydB demonstrated a high hydrolytic activity against various AHLs. Kinetic analysis of JydB revealed a high catalytic efficiency (k_cat/K_M) against C4-HSL and 3-oxo-C6 HSL, ranging from 1.88 x 10⁶ to 1.45 x 10⁶ M^-1 s^-1, with distinctly low K_M values (0.16-0.24 mM). This study affirms that the AHL degrading activity and biofilm inhibition ability of Rhodococcus sp. BH4 may be due to the presence of multiple quorum quenching enzymes, including two types of AHL-lactonases, in addition to AHL-acylase and oxidoreductase, for which the genes have yet to be described.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.55 no.5
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• pp.612-624
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• 2022

A novel Gram-positive, motile, non-spore forming aerobic marine bacterium, designated 107-1^T was isolated from tidal mud collected in Gyehwa-do, South Korea. Cells of strain 107-1^T were short rod or coccoid, oxidase negative, catalase positive and grew at 10-40℃ (with optimum growth at 25-30℃). It utilized menaquinones MK-7 and 8 as its respiratory quinones and its major fatty acids were anteiso-C_15:0 (37.9%), iso-C_16:0 (14.9%), and iso-C_14:0 (10.8%). Phylogenetic analysis based on 16S rRNA gene sequences revealed a distinct clade containing strain 107-1^T and close species Planococcus ruber CW1^T(98.52% sequence similarity), P. faecalis KCTC 33580^T(97.67%), P. kocurii ATCC 43650T(97.48%), P. donghaensis DSM 22276T(97.47%), and P. halocryophilus DSM 24743T(97.37%). Strain 107-1^T contains one circular chromosome (3,513,248bp in length) with G+C content of 44.6 mol%. Estimated ranges for genome to genome distance, average nucleotide identity, and average amino acid identity comparing strain 107-1^T with close taxa were 20.3-34.8%, 77.9-86.9%, and 73.6-92.8%, respectively. Based on polyphasic analysis, strain 107-1^T represents a novel species belonging to the genus Planococcus.

• Microbiology and Biotechnology Letters
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• v.49 no.1
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• pp.75-87
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• 2021

Type I Interferons (IFNα) are known for their role as biological anticancer agents owing to their cell-apoptosis inducing properties. Development of an appropriate, cost-effective host expression system is crucial for meeting the increasing demand for proteins. Therefore, this study aims to develop codon-optimized IFNα-2b in L. lactis NZ3900. These cells express extracellular protein using the NICE system and Usp₄₅ signal peptide. To validate the mature form of the expressed protein, the recombinant IFNα-2b was screened in a human colorectal cancer cell line using the cytotoxicity assay. The IFNα-2b was successfully cloned into the pNZ8148 vector, thereby generating recombinant L. lactis pNZ8148-SP_Usp45-IFNα-2b. The computational analysis of codon-optimized IFNα-2b revealed no mutation and amino acid changes; additionally, the codon-optimized IFNα-2b showed 100% similarity with native human IFNα-2b, in the BLAST analysis. The partial size exclusion chromatography (SEC) of extracellular protein yielded a 19 kDa protein, which was further confirmed by its positive binding to anti-IFNα-2b in the western blot analysis. The crude protein and SEC-purified partial fraction showed IC₅₀ values of 33.22 ㎍/ml and 127.2 ㎍/ml, respectively, which indicated better activity than the metabolites of L. lactis NZ3900 (231.8 ㎍/ml). These values were also comparable with those of the regular anticancer drug tamoxifen (105.5 ㎍/ml). These results demonstrated L. lactis as a promising host system that functions by utilizing the pNZ8148 NICE system. Meanwhile, codon-optimized usage of the inserted gene increased the optimal protein expression levels, which could be beneficial for its large-scale production. Taken together, the recombinant L. lactis IFNα-2b is a potential alternative treatment for colorectal cancer. Furthermore, its activity was analyzed in the WiDr cell line, to assess its colorectal anticancer activities in vivo.

• Journal of Microbiology and Biotechnology
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• v.33 no.8
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• pp.1023-1029
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• 2023

Biosurfactants reduce surface and interfacial tension due to their amphiphilic properties and are an eco-friendly alternative for chemical surfactants. In this study, a new yeast strain JAF-11 that produces a biosurfactant was selected using drop collapse method, and the properties of the extracts were investigated. The nucleotide sequences of the strain were compared with closely related strains and identified based on the D1/D2 domain of the large subunit ribosomal DNA (LSU) and internal transcribed spacer (ITS) regions. Neodothiora populina CPC 39399^T, the closest species with strain JAF-11, showed a sequence similarity of 97.75% for LSU and 94.27% for ITS, respectively. The result suggests that the strain JAF-11 represents a distinct species that cannot be assigned to any existing genus or species in the family Dothideaceae. Strain JAF-11 produced a biosurfactant reducing the surface tension of water from 72 mN/m to 34.5 mN/m on the sixth day of culture and the result of measuring the critical micelle concentration (CMC) by extracting the crude biosurfactant was found to be 24 mg/l. The molecular weight 502 of the purified biosurfactant was confirmed by measuring the fast atom bombardment mass spectrum. The chemical structure was analyzed by measuring ¹H nuclear magnetic resonance (NMR), ¹³C NMR, and two-dimensional NMRs of the compound. The molecular formula was C₂₆H₄₆O₉, and it was composed of one octanoyl group and two hexanoyl groups to myo-inositol moiety. The new biosurfactant is the first report of a compound produced by a new yeast strain, JAF-11.

• Korean Journal of Ichthyology
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• v.2 no.1
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• pp.36-46
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• 1990

Samples were obtained with a set net during 7 months between March and October in 1987 off the coast of Hwasun, southern part of Cheju Island. Most of organisms, representing 36 species, were less than 20cm(96%) in length, and 30g(74%) in weight. The four most abundant species were jack mackerel, Trachurus japonicus ; squid, Todarodes pacificus ; mackerel, Scomber japonicus ; and Apogon semilineatus, which comprised about 89% of the total individuals and about 70% of the total weight. Diversity index, the number of species and information index for individual were high in early spring, even though biomass was not abundant. On the other hand, diversity index and information index for individual were relatively high in August in spite of low occurrence of the species number. A cluster analysis of 24 species which appeared more than twice during the 7 samplings were illustrated from the similarity matrix. All of the 24species were grouped at the 0.14 similarity level. They were divided into four groups at 0.50 level.

• Journal of the Korea Organic Resources Recycling Association
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• v.13 no.2
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• pp.85-90
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• 2005

Changes of biochemical and genetic diversity of microbial communities in the soil damaged by a forest fire were analyzed. Soil samples were collected from Gangnung area where a forest fire was broken out in 2000. Two soil samples were from the burnt area, one from the naturally restoring soil (NS) and the other from the artificially restoring soil (AS). A normal, unaffected soil sample (US) was also included as a control. For the biochemical diversity, each sample was directly applied to the BIOLOG system, and the cluster analysis through a statistic process (SPSS) were performed. Genetic diversity was analyzed through DGGE using 16S-rDNA amplified from soil DNA. Among the samples tested, top soils of US and NS, and sub soil of NS revealed more than 70% of the similarity value in biochemical diversity. In case of genetic diversity, however, the similarity value was found to be in the range of 53% to 68% in all samples. This result indicates that the biochemical diversity is not always correlated with the genetic diversity in the analysis of microbial communities.

• Molecules and Cells
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• v.25 no.2
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• pp.163-171
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• 2008

The genus Cynodon comprises ten species. The objective of this study was to evaluate the genetic diversity of Korean bermudagrasses at the morphological, cytological and molecular levels. Morphological parameters, the nuclear DNA content and ploidy levels were observed in 43 bermudagrass ecotypes. AFLP markers were evaluated to define the genetic diversity, and chromosome counts were made to confirm the inferred cytotypes. Nuclear DNA contents were in the ranges 1.42-1.56, 1.94-2.19, 2.54, and 2.77-2.85 pg/2C for the triploid, tetraploid, pentaploid, and hexaploid accessions, respectively. The inferred cytotypes were triploid (2n = 3x = 27), tetraploid (2n = 4x = 36), pentaploid (2n = 5x = 45), and hexaploid (2n = 6x = 54), but the majority of the collections were tetraploid (81%). Mitotic chromosome counts verified the corresponding ploidy levels. The fast growing fine-textured ecotypes had lower ploidy levels, while the pentaploids and hexaploids were coarse types. The genetic similarity ranged from 0.42 to 0.94 with an average of 0.64. UPGMA cluster analysis and principle coordinate analysis separated the ecotypes into 6 distinct groups. The genetic similarity suggests natural hybridization between the different cytotypes, which could be useful resources for future breeding and genetic studies.