• 제목/요약/키워드: (L, N)-structure

검색결과 792건 처리시간 0.031초

Optimizing the binding activity of the AP2/ERF transcription factor with the GCC box element from Brassica napus by directed evolution

  • Jin, Xiao-Fen;Zhu, Bo;Peng, Ri-He;Jiang, Hai-Hua;Chen, Jian-Min;Zhuang, Jing;Zhang, Jian;Yao, Quan-Hong;Xiong, Ai-Sheng
    • BMB Reports
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    • 제43권8호
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    • pp.567-572
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    • 2010
  • In this study, we cloned the ERF-B3 subfamily transcription factor gene BnaERF-B3-hy15 from Brassica napus L. Huyou15. This 600 bp gene encodes a 199 amino acid classic ethylene responsive factor (ERF), which shown no binding or very weak binding GCC box-binding activity by the yeast one-hybrid assay. We used gene shuffling and the yeast one-hybrid system to obtain three mutated sequences that can bind to the GCC box. Sequence analysis indicated that two residues, Gly156 in the AP2 domain and Phe62 at the N-terminal domain were mutated to arginine and serine, respectively. Changes of Gly156 to arginine and Phe62 to serine increased the GCC-binding activity of BnaERF-B3-hy15 and the alter of Gly156 to arginine changed the AP2-domain structure of BnaERF-B3-hy15.

제주도 근해의 옥돔 어업과 어장 환경에 관한 연구 (The fishery and fishing ground environment for red horsehead (Branchiostegus japonicus) on the adjacent seas of Jeju Island)

  • 김정창;강일권;김동선;이준호
    • 수산해양기술연구
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    • 제42권1호
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    • pp.19-29
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    • 2006
  • To investigate the fishery and fishing ground environment of red horsehead (Branchiostegus japonicus), the author analyzed the fishery data and examined the amount of catches and oceanic environment on the adjacent seas of Jeju island and East China Sea. It was turned out that the favourable season of the red horsehead fishery is the month from March to June, the main fishing ground is located in 60 mile radius from the position $32.5^{\circ}N,\;125.7^{\circ}E$. The bottom seawater temperature in fishing ground was shown between $l3^{\circ}C\;and\;16^{\circ}C$, the salinity was appeared between 33.5 and 34.0psu without the seasonal variation of the year. Concentrations of materials(e.g, $NO_3^-\;and\;NO_2^-$) in spring and summer time in main fishing ground were higher than any other seasons, but that of phospheric materials were lower than any other seasons. Concentrations of $chlorophyll\;-\;{\alpha}$ in the main fishing ground was the highest in spring and summer at the surface layer, but the vertical profile of the $chlorophyll\;-\;{\alpha}$ concentrations in all seasons were not variable at bottom layer. Mean density of zooplankton abundance according to the vertical structure was higher and much stable in summer and autumn than spring and winter.

엉겅퀴 지상부의 심혈관 작용활성 및 후라본 배당체의 분리 (Isolation of Flavone Glycoside from Circium japonicum var ussuriense and Biological Activity on the Cardiovascular System)

  • 임상선;이종호;박종철
    • 한국식품영양과학회지
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    • 제26권2호
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    • pp.242-247
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    • 1997
  • 엉겅퀴 지상부 중 심혈관계에 대한 영향과 활성성분을 구명하기 위하여 S.D.계 흰쥐의 적출한 성장과 혈관에 대한 작용과 혈압을 측정하였고 그 유효성분을 분리하였다. 엉겅퀴 지상부의 MeOH 추출엑스를 계통분획법에 의하여 분획하여 심장과 혈관에 작용하는 BuOH층을 분리, 정제한 후 UV, IR, $^{1}H-NMR$, $^{13}C-NMR$ 등의 분석방법으로 동정한 결과 flavonoid 배당체인 hispidulin $7-0-{\alpha}-L-rhamnopyranosyl(1{\rightarrow}2)-{\beta}-D-glucopyranoside$로 밝혀졌으며 흰쥐의 심박수 증가 및 심근과 흉부대동맥을 수축시켰고 혈압을 상승시키는 효과가 있었다.

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Short-term effects of elevated CO2 on periphyton community in an artificially constructed channel

  • Park, Hye-Jin;Kwon, Dae-Ryul;Kim, Baik-Ho;Hwang, Soon-Jin
    • Journal of Ecology and Environment
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    • 제40권1호
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    • pp.12-19
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    • 2016
  • Background: Direct impact of inorganic carbon (i.e., carbon dioxide ($CO_2$)) on the periphyton community is important to understand how and to what extent atmospheric conditions can affect the structure and dynamics of these communities in lotic systems. We investigated the influence of elevated $CO_2$ concentration on the periphyton community in the artificially constructed channels during the winter period. The channels made of acrylic paneling were continuously supplied with surface water discharged from a small reservoir, which was supported with ground water, at a flow rate of 5 L/min, and water temperature ranging $4-5^{\circ}C$. The effects of elevated $CO_2$ concentrations (790 ppm) were evaluated in comparison with the control (395 ppm $CO_2$) by analyzing pH, water carbon content and nutrients in water, periphyton composition and biomass, chlorophyll-a, ash-free dry-matter at 2-day intervals for 10 days. Results: After the addition of $CO_2$, significant decreases of pH, $NH_3-N$, and $PO_4-P$ (p < 0.05) and increases of chlorophyll-a, ash-free dry-matter, and the cell density of periphyton (p < 0.01) were observed, whereas the species composition of periphyton and water carbon content did not change. Conclusions: These results suggest that elevated $CO_2$ in flowing water system with low temperature could facilitate the growth of periphyton resulting in biomass increase, which could further influence water quality and the consumers throughout the food web.

진해만의 장목항에서 단주기 샘플링에 의한 중형동물플랑크톤 군집의 연변동 (Annual Variations in Community Structure of Mesozooplankton by Short-term Sampling in Jangmok Harbor of Jinhae Bay)

  • 황옥명;신경순;백승호;이우진;김수암;장민철
    • Ocean and Polar Research
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    • 제33권3호
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    • pp.235-253
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    • 2011
  • The annual variation of mesozooplankton community in the Jangmok harbor of Jinhae Bay was studied in relation to environmental variables. Sampling was carried out weekly from January to December 2009. During the study periods, mesozooplankton community consisted of 44 taxa and the annual mean abundance was 8308 inds. $m^{-3}$. The maximum abundance was observed to be 50043 inds. $m^{-3}$ in August and the minimum in April with 1013 inds. $m^{-3}$. Of these, Penilia avirostris, cirripedia larvae, Evadne tergestina, Acartia omorii, Oikopleura s, Paracalanus parvus s. l., Eurytemora pacifica, Podon s, Oithona s, and Acartia steueri were observed as dominant species in Jangmok bay and they also contributed to 79% of total mesozooplankton. According to non-metric multidimensional scaling (nMDS) and cluster analysis based on the mesozooplankton community data from each season, the community was divided into three groups. The first group included appearence species in winter and spring season, which is mainly dominated the copepod such as A. omorii and E. pacifica. The second and third group was composed with observed species in summer and autumn, respectively. Based on the SIMPER (similarity percentages), P. avirostris in summer and cirripedia larvae in autumn were significantly dominated. Our results indicate that although the mesozooplankton abundances in Jangmok harbor fluctuated abruptly, its annual variation was strongly influenced by water temperature.

Rational Introduction of Disulfide Bond to Enhance Optimal Temperature of Lipomyces starkeyi $\alpha$-Dextranase Expressed in Pichia pastoris

  • Chen, Lin;Yu, Chao;Zhou, Xiangshan;Zhang, Yuanxing
    • Journal of Microbiology and Biotechnology
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    • 제19권12호
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    • pp.1506-1513
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    • 2009
  • $\alpha$-Dextranase, which can hydrolyze dextran, is largely used in the sugar industry. However, a thermostable $\alpha$-dextranase is needed to alleviate the viscosity of syrups and clean blocked machines. Thus, to improve the optimal temperature of Lipomyces starkeyi $\alpha$-dextranase expressed by Pichia pastoris, the rational introduction of a de novo designed disulfide bond was investigated. Based on the known structure of Penicillium minioluteum dextranase, L. starkeyi $\alpha$-dextranase was constructed using homology modeling. Four amino acids residues were then selected for site-directed mutagenesis to cysteine. When compared with the wild-type dextranase, the mutant DexM2 (D279C/S289C) showed a more than $13^{\circ}C$ improvement on its optimal temperature. DexM2 and DexM12 (T245C/N248C, D279C/S289C) also showed a better thermal stability than the wild-type dextranase. After the introduction of two disulfide bonds, the specific activity of DexM12 was evaluated and found to be two times higher than that of the wild-type. Moreover, DexM12 also showed the highest $V_{max}$.

ACE-Inhibitory Properties of Proteolytic Hydrolysates from Giant Jellyfish Nemopilema nomurai

  • Yoon, Ho-Dong;Kim, Yeon-Kye;Lim, Chi-Won;Yeun, So-Mi;Lee, Moon-Hee;Moon, Ho-Sung;Yoon, Na-Young;Park, Hee-Yeon;Lee, Doo-Seog
    • Fisheries and Aquatic Sciences
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    • 제14권3호
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    • pp.174-178
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    • 2011
  • This study aimed to determine the degree of hydrolysis and angiotensin-I-converting enzyme (ACE)-inhibitory activity of Giant Jellyfish Nemopilema nomurai (jellyfish) hydrolysates. The degree of hydrolysis using six proteolytic enzymes (Alcalase, Flavozyme, Neutrase, papain, Protamex, and trypsin) ranged from 13.1-36.8% and the inhibitory activities from 20.46-79.58%. Using papain hydrolysate, we newly isolated and characterized ACE-inhibitory peptides with a molecular weight of 3,000-5,000 Da that originated from jellyfish collagen. The purified peptide (FII-b) was predicted to be produced from an alpha-2 fragment of the type IV collagen of jellyfish. The N-terminal sequence of FII-b was Asp-Pro-Gly-Leu-Glu-Gly-Ala-His-Gly- and showed 87% identity to the collagen type IV alpha-2 fragment of Rattus norvegicus and a predicted protein from Nematostella vectensis, indicating that the ACE-inhibitory peptide originated from the collagen hydrolysate and had an $IC_{50}$ value of 3.8 ${\mu}g$/mL. The primary structure of the fragment is now being studied; this peptide represents an interesting new type of ACE inhibitor and will provide knowledge of the potential applications of jellyfish components as therapies for hypertension.

Anticancer activity and potential mechanisms of 1C, a ginseng saponin derivative, on prostate cancer cells

  • Wang, Xu De;Su, Guang Yue;Zhao, Chen;Qu, Fan Zhi;Wang, Peng;Zhao, Yu Qing
    • Journal of Ginseng Research
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    • 제42권2호
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    • pp.133-143
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    • 2018
  • Background: AD-2 (20(R)-dammarane-3b, 12b, 20, 25-tetrol; 25-OH-PPD) is a ginsenoside and isolated from Panax ginseng, showing anticancer activity against extensive human cancer cell lines. In this study, effects and mechanisms of 1C ((20R)-3b-O-(L-alanyl)-dammarane-12b, 20, 25-triol), a modified version of AD-2, were evaluated for its development as a novel anticancer drug. Methods: MTT assay was performed to evaluate cell cytotoxic activity. Cell cycle and levels of reactive oxygen species (ROS) were determined using flow cytometry analysis. Western blotting was employed to analyze signaling pathways. Results: 1C concentration-dependently reduces prostate cancer cell viability without affecting normal human gastric epithelial cell line-1 viability. In LNCaP prostate cancer cells, 1C triggered apoptosis via Bcl-2 family-mediated mitochondria pathway, downregulated expression of mouse double minute 2, upregulated expression of p53 and stimulated ROS production. ROS scavenger, N-acetylcysteine, can attenuate 1C-induced apoptosis. 1C also inhibited the proliferation of LNCaP cells through inhibition on $Wnt/{\beta}-catenin$ signaling pathway. Conclusion: 1C shows obvious anticancer activity based on inducing cell apoptosis by Bcl-2 family-mediated mitochondria pathway and ROS production, inhibiting $Wnt/{\beta}-catenin$ signaling pathway. These findings demonstrate that 1C may provide leads as a potential agent for cancer therapy.

나노두께 퍼말로이에서의 계면효과에 의한 자기적 물성 변화 (Evolution of Magnetic Property in Ultra Thin NiFe Films)

  • 정영순;송오성
    • 한국자기학회지
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    • 제14권5호
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    • pp.163-168
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    • 2004
  • 나노 두께의 NiFe의 자기적 특성을 살펴보기 위해 Si(100)/ $SiO_2$(200 nm)/Ta(5 nm)/N $i_{80}$F $e_{20}$(1~15 nm)의 구조를 ICP형 헬리콘 스퍼터로 제작하였다. 제작된 시편의 자기적 물성은 SQUID를 이용하여 $\pm$50 Oe에서의 4.2K와 300K에서 각각의 M-H loop를 측정하여 자기탄성에너지 변화와 보자력을 확인하였다. 또한 SQUID로 4.2K-300K에서의 M-T curve를 통해 온도에 따른 포화자화를 두께에 따라 살펴보았다. TEM을 사용하여 제작된 시편의 각 계면간의 미세구조를 살펴보았다 나노두께의 NiFe는 3 nm 이하에서는 $B_{bulk}$=0, $B_{surf}$=-3${\times}$$10^{-7}$(J/$m^2$)의 자기 탄성계수를 보였으며, 보자력은 급격히 증가하는 것을 확인하였다. 나노 두께의 퍼말로이는 계면효과에 의해서 벌크특성과 다른 자기탄성계수, 보자력, Ms의 변화가 발생하였다. 따라서 나노급 소자를 제작할 때 이러한 변화를 고려하여 설계하여야 하였다.

Statistical Analysis for Turbulence Properties of the Orion Molecular Cloud

  • Yun, Hyeong-Sik;Lee, Jeong-Eun;Choi, Yunhee;Lee, Seokho;Choi, Minho;Kang, Hyunwoo;Tatematsu, Ken'ichi;Offner, Stella S.R.;Gaches, Brandt A.L.;Heyer, Mark H.;Evans, Neal J. II;Yang, Yao-Lun
    • 천문학회보
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    • 제41권2호
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    • pp.55.5-56
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    • 2016
  • Turbulence plays an important role in molecular clouds. However, the properties of turbulence are poorly understood. In order to study the influence of turbulence in molecular clouds, we need to sample the turbulent properties in the full range of scales down to sonic scale. We mapped the $20^{\prime}{\times}60^{\prime}$ area covering the Orion Molecular Cloud (OMC) 1-4 region in HCN 1-0 and HCO+ 1-0 with Taeduk Radio Astronomy Observatory (TRAO) 14-m telescope as part of the TRAO key science program, "Mapping turbulent properties of star-forming molecular clouds down to the sonic scale (PI: Jeong-Eun Lee)". In addition, we combine our TRAO data with other molecular line maps ($^{13}CO$ 1-0, $C^{18}O$ 1-0, CS 1-0, $N_2H^+$ 1-0) obtained with the Nobeyama Radio Observatory (NRO) 45-m telescope. To analyze these data, we apply statistical methods, the principal component analysis (PCA) and spectral correlation function (SCF), which are known to be useful to study underlying turbulent properties and to quantitatively characterize cloud structure. We will present the preliminary results of observations and analyses.

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