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Complete Genome Sequence of Paraburkholderia phenoliruptrix T36S-14, a Plant Growth Promoting Bacterium on Tomato (Solanum lycopersicum L.) Seedlings

토마토생장촉진효과가있는 Paraburkholderia phenoliruptrix T36S-14 균주의유전체염기서열

  • Jiwon Kim (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Yong Ju Jin (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Min Ju Lee (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Dong Suk Park (Microbial Safety Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Jaekyeong Song (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration)
  • 김지원 (국립농업과학원 농업미생물과) ;
  • 진용주 (국립농업과학원 농업미생물과) ;
  • 이민주 (국립농업과학원 농업미생물과) ;
  • 박동석 (국립농업과학원 유해생물과) ;
  • 송재경 (국립농업과학원 농업미생물과)
  • Received : 2024.02.26
  • Accepted : 2024.05.23
  • Published : 2024.06.28

Abstract

Paraburkholderia phenoliruptrix T36S-14, identified as a potential plant growth-promoting bacterium, was isolated from the core microbiome of tomato rhizosphere soil. When assessed for its growth promotion, Strain T36S-14 demonstrated a notable 20% increase in the fresh weight of tomato seedlings. The strain possesses two circular chromosomes, one of 4,104,520 base pair (bp) (CP119873) and the other of 3,258,072 bp (CP119874), both exhibiting G+C contents of 63.5% and 62.7%, respectively. The chromosome comprises 6,319 protein-coding sequences, 65 transfer RNA genes, and 18 ribosomal RNA genes (5S: 6, 16S: 6, and 23S: 6). Additionally, P. phenoliruptrix T36S-14 produces siderophores that promote plant growth.

Keywords

Acknowledgement

This study was carried out with the support of "Research program for Agricultural Science & Technology Development (Project No PJ015876)" from the National Institute of Agricultural Sciences, Rural Development Administration, Republic of Korea. This study was supported by 2020-2023 collaborative research program between university and Rural Development Administration, Republic of Korea.

References

  1. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, et al. 2016. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 44: 6614-6624.
  2. Lee I, Kim YO, Park SC, Chun J. 2016. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int. J. Syst. Evol. Microbiol. 66: 1100-1103.
  3. Rodriguez-R LM, Konstantinidis KT. 2014. Bypassing cultivation to identify bacterial species. Microbe 9: 111-118.
  4. Wibberg D, Stadler M, Lambert C, Bunk B, Sproer C, Ruckert-Reed C, et al. 2020. High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa. Fungal Divers. 106: 7-28.
  5. Dias GM, de Sousa Pires A, Grilo VS, Castro MR, de Figueiredo Vilela L, Neves BC. 2019. Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens. Microbiologyopen 8: e00801.
  6. Sawana A, Adeolu M, Gupta RS. 2014. Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Front. Genet. 5: 429.
  7. Coenye T, Henry D, Speert DP, Vandamme P. 2004. Burkholderia phenoliruptrix sp. nov., to accommodate the 2, 4, 5-trichlorophenoxyacetic acid and halophenol-degrading strain AC1100. Syst. Appl. Microbiol. 27: 623-627.
  8. Belles-Sancho P, Beukes C, James EK, Pessi G. 2023. Nitrogen-fixing symbiotic Paraburkholderia species: Current knowledge and future perspectives. Nitgrogen 4: 135-158.
  9. Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, et al. 2023. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualization. Nucleic Acids Res. 51: 46-50.
  10. Patten CL, Glick BR. 1996. Bacterial biosynthesis of indole-3-acetic acid. Can. J. Microbiol. 42: 207-220.
  11. Singh RP, Shelke GM, Kumar A, Jha PN. 2015. Biochemistry and genetics of ACC deaminase: a weapon to "stress ethylene" produced in plants. Front. Microbiol. 6: 937.