Acknowledgement
This study was carried out with the support of "Research program for Agricultural Science & Technology Development (Project No PJ015876)" from the National Institute of Agricultural Sciences, Rural Development Administration, Republic of Korea. This study was supported by 2020-2023 collaborative research program between university and Rural Development Administration, Republic of Korea.
References
- Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, et al. 2016. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 44: 6614-6624. https://doi.org/10.1093/nar/gkw569
- Lee I, Kim YO, Park SC, Chun J. 2016. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int. J. Syst. Evol. Microbiol. 66: 1100-1103. https://doi.org/10.1099/ijsem.0.000760
- Rodriguez-R LM, Konstantinidis KT. 2014. Bypassing cultivation to identify bacterial species. Microbe 9: 111-118. https://doi.org/10.1128/microbe.9.111.1
- Wibberg D, Stadler M, Lambert C, Bunk B, Sproer C, Ruckert-Reed C, et al. 2020. High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa. Fungal Divers. 106: 7-28. https://doi.org/10.1007/s13225-020-00447-5
- Dias GM, de Sousa Pires A, Grilo VS, Castro MR, de Figueiredo Vilela L, Neves BC. 2019. Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens. Microbiologyopen 8: e00801.
- Sawana A, Adeolu M, Gupta RS. 2014. Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Front. Genet. 5: 429.
- Coenye T, Henry D, Speert DP, Vandamme P. 2004. Burkholderia phenoliruptrix sp. nov., to accommodate the 2, 4, 5-trichlorophenoxyacetic acid and halophenol-degrading strain AC1100. Syst. Appl. Microbiol. 27: 623-627. https://doi.org/10.1078/0723202042369992
- Belles-Sancho P, Beukes C, James EK, Pessi G. 2023. Nitrogen-fixing symbiotic Paraburkholderia species: Current knowledge and future perspectives. Nitgrogen 4: 135-158. https://doi.org/10.3390/nitrogen4010010
- Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, et al. 2023. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualization. Nucleic Acids Res. 51: 46-50.
- Patten CL, Glick BR. 1996. Bacterial biosynthesis of indole-3-acetic acid. Can. J. Microbiol. 42: 207-220. https://doi.org/10.1139/m96-032
- Singh RP, Shelke GM, Kumar A, Jha PN. 2015. Biochemistry and genetics of ACC deaminase: a weapon to "stress ethylene" produced in plants. Front. Microbiol. 6: 937.