Acknowledgement
This research was supported by the 2022 scientific promotion program funded by Jeju National University.
References
- Benson, J., Stewart, B., Close, P. & Lymbery, A. 2022. Evidence for multiple refugia and hotspots of genetic diversity for Westralunio carteri, a threatened freshwater mussel in south-western Australia. Aquat. Conserv. Mar. Freshw. Ecosyst. 32:559-575. https://doi.org/10.1002/aqc.3780
- Bickford, D., Lohnan, D. J., Sodhi, N. S., Ng, P. K. L., Meier, R., Winker, K., Ingram, K. K. & Das, I. 2007. Cryptic species as a window on diversity and conservation. Trends Ecol. Evol. 22:148-155. https://doi.org/10.1016/j.tree.2006.11.004
- Boo, G. H., Leliaert, F., Le Gall, L., Coppejans, E., De Clerck, O., Nguyen, T. V., Payri, C. E., Miller, K. A. & Yoon, H. S. 2022. Ancient Tethyan vicariance and long-distance dispersal drive global diversification and cryptic speciation in the red seaweed Pterocladiella. Front. Plant Sci. 13:849476.
- Chiocchio, A., Arntzen, J. W., Martinez-Solano, I., de Vries, W., Bisconti, R., Pezzarossa, A., Maiorano, L. & Canestrelli, D. 2021. Reconstructing hotspots of genetic diversity from glacial refugia and subsequent dispersal in Italian common toads (Bufo bufo). Sci. Rep. 11:260.
- Cremades, J., Barreiro, R., Maneiro, I. & Saunders, G. W. 2011. A new taxonomic interpretation of the type of Plocamium cartilagineum (Plocamiales, Florideophyceae) and its consequences. Eur. J. Phycol. 46:125-142. https://doi.org/10.1080/09670262.2011.565129
- De Clerck, O., Engledow, H. R., Bolton, J. J., Anderson, R. J. & Coppejans, E. 2002. Twenty marine benthic algae new to South Africa, with emphasis on the flora of Kwazulu-Natal. Bot. Mar. 45:413-431. https://doi.org/10.1515/BOT.2002.042
- Diaz-Tapia, P., Ly, M. & Verbruggen, H. 2020. Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): molecular species delimitation and morphometric analyses. Mol. Phylogenet. Evol. 152:106909.
- Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29:1969-1973. https://doi.org/10.1093/molbev/mss075
- Excoffier, L., Laval, G. & Schneider, S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
- Fujisawa, T. & Barraclough, T. G. 2013. Delimiting species using single-locus data and the Gneralized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Syst. Biol. 62:707-724. https://doi.org/10.1093/sysbio/syt033
- Grant, W. S. & Bowen, B. W. 1998. Shallow population histrories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J. Hered. 89:415-426. https://doi.org/10.1093/jhered/89.5.415
- Guiry, M. D. & Guiry, G. M. 2023. Algaebase. World-wide electronic publication, National University of Ireland, Galway. Available from: https://www.algaebase.org. Accessed Mar 20, 2023.
- Kang, J. C. & Kim, M. S. 2012. Seasonal variation in depth-stratified macroalgal assemblage patterns on Marado, Jeju Island, Korea. Algae 27:269-281. https://doi.org/10.4490/algae.2012.27.4.269
- Kang, J. C., Lin, S. -M., Miller, K. A. & Kim, M. S. 2021. Taxonomic revision of hook-forming Acrosorium (Delesseriaceae, Rhodophyta) from the Northwestern Pacific based on morphology and molecular data. Plants 10:2269.
- Kim, H. S. & Hwang, I. K. 2015. Algal flora of Korea. Vol. 4, No. 10. Marine red algae. Rhodophyta: Florideophyceae: Gelidiales, Gracilariales, Procamiales. National Institute of Biological Resources, Incheon, 140 pp.
- Kim, J. -Y., Yoon, M. -Y., Cha, M. -R., Hwang, J. -H., Park, E., Choi, S. -U., Park, H. -R. & Hwang, Y. -I. 2007. Methoanolic extracts of Plocamium telfairiae induce cytotoxicity and caspase-dependent apoptosis in HT-29 human colon carcinoma cells. J. Med. Food 10:587-593. https://doi.org/10.1089/jmf.2007.002
- Kim, M. S., Kim, S. Y. & Nelson, W. 2010. Symphyocladia lithophila sp. nov. (Rhodomelaceae, Ceramiales), a new Korean red algal species based on morphology and rbcL sequences. Bot. Mar. 53:233-241. https://doi.org/10.1515/BOT.2010.031
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35:1547-1549. https://doi.org/10.1093/molbev/msy096
- Lane, C. E., Lindstrom, S. C. & Saunders, G. W. 2007. A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding. Mol. Phylogenet. Evol. 44:634-648. https://doi.org/10.1016/j.ympev.2007.03.016
- Lee, H. W., Kang, J. C. & Kim, M. S. 2019. Taxonomy of Ulva causing blooms from Jeju Island, Korea with new species, U. pseudo-ohnoi sp. nov. (Ulvales, Chlorophyta). Algae 34:253-266. https://doi.org/10.4490/algae.2019.34.12.9
- Lee, S. J. & Kim, M. S. 2022. Morphology of Plocamium cartilagineum (Plocamiales, Rhodophyta) from Korea. Aquat. Nat. 2:59-68.
- Montecinos, A. E., Huanel, O. R., Ramirez, M. E. & Guillemin, M. -L. 2021. Molecular data reveal the presence of three Plocamium Lamouroux species with complex patterns of distribution in Southern Chile. Cryptogam. Algol. 42:1-19. https://doi.org/10.5252/cryptogamie-algologie2021v42a1
- Muangmai, N., Preuss, M., West, J. A. & Zuccarello, G. C. 2022. Cryptic diversity and phylogeographic patterns of the Bostrychia intricata species complex (Rhodomelaceae, Rhodophyta) along the coast of southeastern Australia. Phycologia 61:27-36. https://doi.org/10.1080/00318884.2021.1994768
- Nauer, F., Gurgel, C. F. D., Ayres-Ostrock, L. M., Plastino, E. M. & Oliveira, M. C. 2019. Phylogeography of the Hypnea musciformis species complex (Gigartinales, Rhodophyta) with the recognition of cryptic species in the western Atlantic Ocean. J. Phycol. 55:676-687. https://doi.org/10.1111/jpy.12848
- Park, S. Y., Kang, H. M., Song, W. C., Oh, J. -W., Park, G. & Choi, Y. -W. 2022. Characterization of Plocamium telfairiae extract-functionalized Au nanostructures and their anti-adipogenic activity through PLD1. Mar. Drugs 20:421.
- Payo, D. A., Colo, J., Calumpong, H. & De Clerck, O. 2011. Variability of non-polar secondary metabolites in the red alga Portieria. Mar. Drugs 9:2438-2468. https://doi.org/10.3390/md9112438
- Puillandre, N., Brouillet, S. & Achaz, G. 2021. ASAP: assemble species by automatic partitioning. Mol. Ecol. Resour. 21:609-620. https://doi.org/10.1111/1755-0998.13281
- Rambaut, A., Drummond, A. J., Xie, D., Baele, G. & Suchard, M. A. 2018. Posterior summarization in Bayesian phylogenetic using tracer 1.7. Syst. Biol. 67:901-904. https://doi.org/10.1093/sysbio/syy032
- Reddy, M. M., du Plessis, J., Roodt-Wilding, R., Anderson, R. J. & Bolton, J. J. 2023. The reinstatement of Plocamium robertiae (Rhodophyta, Plocamiales) and an updated species inventory of the genus in South Africa. Phycologia 62:194-202. https://doi.org/10.1080/00318884.2023.2174342
- Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. K., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M. A. & Huelsenbeck, J. P. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61:539-542. https://doi.org/10.1093/sysbio/sys029
- Rovirosa, J., Soler, A., Blanc, V., Leon, R. & San-Martin, A. 2013. Bioactive monoterpenes from Antarctic Plocamium cartilagineum. J. Chil. Chem. Soc. 58:2025-2026. https://doi.org/10.4067/S0717-97072013000400026
- Sabry, O. M. M., Goeger, D. E., Valeriote, F. A. & Gerwick, W. H. 2017. Cytotoxic halogenated monoterpenes from Plocamium cartilagineum. Nat. Prod. Res. 31:261-267. https://doi.org/10.1080/14786419.2016.1230115
- Saunders, G. W. 2005. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360:1879-1888. https://doi.org/10.1098/rstb.2005.1719
- Saunders, G. W. & Kraft, G. T. 1994. Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta). 1. Evidence for the Plocamiales ord. nov. Can. J. Bot. 72:1250-1263. https://doi.org/10.1139/b94-153
- Saunders, G. W. & Lehmkuhl, K. V. 2005. Molecular divergence and morphological diversity among four cryptic species of Plocamium (Plocamiales, Florideophyceae) in northern Europe. Eur. J. Phycol. 40:293-312. https://doi.org/10.1080/09670260500192935
- Shilling, A. J., Heiser, S., Amsler, C. D., McClintock, J. B. & Baker, B. J. 2021. Hidden diversity in an Antarctic algal forest: metabolomic profiling linked to patterns of genetic diversification in the antarctic red alga Plocamium sp. Mar. Drugs 19:607.
- Shilling, A. J., von Salm, J. L., Sanchez, A. R., Kee, Y., Amsler, C. D., McClintock, J. B. & Baker, B. J. 2019. Anverenes B-E, new polyhalogenated monoterpenes from the Antarctic red alga Plocamium cartilagineum. Mar. Drugs 17:230.
- Struck, T. H., Feder, J. L., Bendiksby, M., Birkeland, S., Cerca, J., Gusarov, V. I., Kistenich, S., Larsson, K. -H., Liow, L. H., Nowak, M. D., Stedji, B., Bachmann, L. & Dimitrov, D. 2018. Finding evolutionary processes hidden in cryptic species. Trends Ecol. Evol. 33:153-163. https://doi.org/10.1016/j.tree.2017.11.007
- Suchard, M. A., Lemey, P., Baele, G., Ayres, D. L., Drummond, A. J. & Rambaut, A. 2018. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evol. 4:vey016.
- Vieira, C., De Clerck, O., De Ramon N'Yeurt, A., D'hondt, S., Millet, L., Kim, M. S., Payri, C. & Zubia, M. 2022. Diversity, systematics, and biogeography of French Polynesian Lobophora (Dictyotales, Phaeophyceae). Eur. J. Phycol. 58:226-253. https://doi.org/10.1080/09670262.2022.2092216
- Wei, X., Fu, Z., Li, J., Guo, B. & Ye, Y. 2023. Genetic structure and phylogeography of commercial Mytilus unguiculatus in China based on mitochondrial COI and Cytb sequences. Fishes 8:89.
- Womersley, H. B. S. 1994. The marine benthic flora of southern Australia Rhodophyta. Part IIIA. Australian Biological Resources Study, Canberra, 508 pp.
- Wynne, M. J. 2002. A description of Plocamium fimbriatum sp. nov. (Plocamiales, Rhodophyta) from the Sultanate of Oman, with a census of currently recognized species in the genus. Nova Hedwigia 75:333-356. https://doi.org/10.1127/0029-5035/2002/0075-0333
- Yang, M. Y., Fujita, D. & Kim, M. S. 2021a. Phylogeography of Gloiopeltis furcata sensu lato (Gigartinales, Rhodophyta) provides the evidence of glacial refugia in Korea and Japan. Algae 36:13-24. https://doi.org/10.4490/algae.2021.36.3.3
- Yang, M. Y. & Kim, M. S. 2018. Cryptic species diversity of ochtodenes-producing Portieria species (Gigartinales, Rhodophyta) from the northwest Pacific. Algae 33:205-214. https://doi.org/10.4490/algae.2018.33.7.30
- Yang, M. Y. & Kim, M. S. 2022. Phylogeography of the economic seaweeds Chondrus (Gigartinales, Rhodophyta) in the northwest Pacific based on rbcL and COI-5P genes. Algae 37:135-147. https://doi.org/10.4490/algae.2022.37.5.29
- Yang, M. Y., Kim, S. Y. & Kim, M. S. 2021b. Population genetic structure and phylogeography of co-distributed Pachymeniopsis species (Rhodophyta) along the coast of Korea and Japan. Diversity 13:336.
- Yang, M. Y., Kim, S. Y. & Kim, M. S. 2021c. Verification of hotspots of genetic diversity in Korean population of Grateloupia asiatica and G. jejuensis (Rhodophyta) show low genetic diversity and similar geographic distribution. Genes Genomics 43:1463-1469. https://doi.org/10.1007/s13258-021-01168-y
- Yang, M. Y., Yang, E. C. & Kim, M. S. 2020. Genetic diversity hotspot of the amphi-Pacific macroalga Gloiopeltis furcata sensu lato (Gigartinales, Florideophyceae). J. Appl. Phycol. 32:2515-2522. https://doi.org/10.1007/s10811-019-02017-y
- Yano, T., Kamiya, M., Arai, S. & Kawai, H. 2004. Morphological homoplasy in Japanese Plocamium species (Plocamiales, Rhodophyta) inferred from the Rubisco spacer sequence and intracellular acidity. Phycologia 43:383-393. https://doi.org/10.2216/i0031-8884-43-4-383.1
- Yano, T., Kamiya, M., Murakami, A., Sasaki, H. & Kawai, H. 2005. Biochemical phenotypes corresponding to molecular phylogeny of the red algae Plocamium (Plocamiales, Rhodophyta): implications of incongruence with the conventional taxonomy. J. Phycol. 42:155-169. https://doi.org/10.1111/j.1529-8817.2006.00178.x
- Zampiglia, M., Bisconti, R., Maiorano, L., Aloise, G., Siclari, A., Pellegrino, F., Martino, G., Pezzarossa, A., Chiocchio, A., Martino, C., Nascetti, G. & Canestrelli, D. 2019. Drilling down hotspots of intraspecific diversity to bring them into on-ground conservation of threatened species. Front. Ecol. Evol. 7:205.
- Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29:2869-2876. https://doi.org/10.1093/bioinformatics/btt499