과제정보
This research was supported by grants from the Central Public-interest Scientific Institution Basal Research Fund (Y2021XK01), the Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-IVFCAAS) and China Agriculture Research System of MOF and MARA. Races 1-6 strains were provided by Dr. Joana G. Vicente from University of Warwick, UK. Strains race 9 and XCBS was provided by Dr. Xixiang Li and Yuhong Yang from Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF-CAAS), Beijing, China, and XCC1, XCC2 and XCC4 were provided by Dr. Jungen Kang from Beijing Academy of Agriculture and Forestry Sciences, Beijing, China. We are grateful to the mentioned institutes and researchers who provided these Xcc strains. The work reported here was performed in the Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Rural Affairs, Beijing 100081, China.
참고문헌
- Achtman, M., Zurth, K., Morelli, G., Torrea, G., Guiyoule, A. and Carniel, E. 1999. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc. Natl. Acad. Sci. U. S. A. 96:14043-14048. https://doi.org/10.1073/pnas.96.24.14043
- Ah-You, N., Gagnevin, L., Grimont, P. A. D., Brisse, S., Nesme, X., Chiroleu, F., Ngoc, L. B. T., Jouen, E., Lefeuvre, P., Verniere, C. and Pruvost, O. 2009. Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas. Int. J. Syst. Evol. Microbiol. 59:306-318. https://doi.org/10.1099/ijs.0.65453-0
- Bella, P., Moretti, C., Licciardello, G., Strano, C. P., Pulvirenti, A., Alaimo, S., Zaccardelli, M., Branca, F., Buonaurio, R., Vicente, J. G. and Catara, V. 2019. Multilocus sequence typing analysis of Italian Xanthomonas campestris pv. campestris strains suggests the evolution of local endemic populations of the pathogen and does not correlate with race distribution. Plant Pathol. 68:278-287. https://doi.org/10.1111/ppa.12946
- Cruz, J., Tenreiro, R. and Cruz, L. 2017. Assessment of diversity of Xanthomonas campestris pathovars affecting cruciferous plants in Portugal and disclosure of two novel X. campestris pv. campestris races. J. Plant Pathol. 99:403-414.
- Enright, M. C. and Spratt, B. G. 1998. A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease. Microbiology 144:3049-3060. https://doi.org/10.1099/00221287-144-11-3049
- Fargier, E., Fischer-Le Saux, M. and Manceau, C. 2011. A multilocus sequence analysis of Xanthomonas campestris reveals a complex structure within crucifer-attacking pathovars of this species. Syst. Appl. Microbiol. 34:156-165. https://doi.org/10.1016/j.syapm.2010.09.001
- Fargier, E. and Manceau, C. 2007. Pathogenicity assays restrict the species Xanthomonas campestris into three pathovars and reveal nine races within X. campestris pv. campestris. Plant Pathol. 56:805-818. https://doi.org/10.1111/j.1365-3059.2007.01648.x
- Gao, X., Zhou, Z., Zhao, Z., Qin, H. and Huang, L. 2016. RepPCR analysis of genotypic diversity of Pseudomonas syringae pv. actinidiae strains from Shaanxi province of China. J. Fruit Sci. 33:340-349.
- Garces, F., Gutierrez, A. and Hoy, J. 2014. Detection and quantification of Xanthomonas albilineans by qPCR and potential characterization of sugarcane resistance to leaf scald. Plant Dis. 98:121-126. https://doi.org/10.1094/PDIS-04-13-0431-RE
- Goncalves, E. R. and Rosato, Y. B. 2002. Phylogenetic analysis of Xanthomonas species based upon 16S-23S rDNA intergenic spacer sequences. Int. J. Syst. Evol. Microbiol. 52:355-361. https://doi.org/10.1099/00207713-52-2-355
- Hauben, L., Vauterin, L., Swings, J. and Moore, E. R. 1997. Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. Int. J. Syst. Bacteriol. 47:328-335. https://doi.org/10.1099/00207713-47-2-328
- Hyytia-Trees, E., Lyhs, U., Korkeala, H. and Bjorkroth, J. 1999. Characterisation of ropy slime-producing Lactobacillus sakei using repetitive element sequence-based PCR. Int. J. Food Microbiol. 50:215-219. https://doi.org/10.1016/S0168-1605(99)00104-X
- Jensen, B. D., Vicente, J. G., Manandhar, H. K. and Roberts, S. J. 2010. Occurrence and diversity of Xanthomonas campestris pv. campestris in vegetable Brassica fields in Nepal. Plant Dis. 94:298-305. https://doi.org/10.1094/PDIS-94-3-0298
- Jiang, H., Dong, H., Zhang, G., Yu, B., Chapman, L. R. and Fields, M. W. 2006. Microbial diversity in water and sediment of Lake Chaka, an Athalassohaline Lake in Northwestern China. Appl. Environ. Microbiol. 72:3832-3845. https://doi.org/10.1128/AEM.02869-05
- Kong, C., Chen, G., Yang, L., Zhuang, M., Zhang, Y., Wang, Y., Ji, J., Fang, Z. and Lv, H. 2021. Germplasm screening and inheritance analysis of resistance to cabbage black rot in a worldwide collection of cabbage (Brassica oleracea var. capitata) resources. Sci. Hortic. 288:110234. https://doi.org/10.1016/j.scienta.2021.110234
- Lema, M., Cartea, M. E., Sotelo, T., Velasco, P. and Soengas, P. 2011. Discrimination of Xanthomonas campestris pv. campestris races among strains from northwestern Spain by Brassica spp. genotypes and rep-PCR. Eur. J. Plant Pathol. 133:159-169. https://doi.org/10.1007/s10658-011-9929-5
- Librado, P. and Rozas, J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 11:1451-1452. https://doi.org/10.1093/bioinformatics/btp187
- Louws, F. J., Fulbright, D. W., Stephens, C. T. and de Bruijn, F. J. 1994. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 60:2286-2295. https://doi.org/10.1128/aem.60.7.2286-2295.1994
- Lu, Y., Zhang, L. G., Hui, M. X. and Zhang, M. K. 2008. Study on pathotypes of black rot of chinese cabbage in Shaanxi Province. J. Northwest Agric. For. Univ. 10:132-138 (in Chinese).
- Lv, H., Fang, Z., Yang, L., Zhang, Y. and Wang, Y. 2020. An update on the arsenal: mining resistance genes for disease management of Brassica crops in the genomic era. Hortic. Res. 7:34. https://doi.org/10.1038/s41438-020-0257-9
- Maiden, M. C. J., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Urwin, R., Urwin, R., Zhang, Q., Zhou, J., Zurth, K., Caugant, D. A., Feavers, I. M., Achtman, M. and Spratt, B. G. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. U. S. A. 95:3140-3145. https://doi.org/10.1073/pnas.95.6.3140
- Martin, B., Humbert, O., Camara, M., Guenzi, E., Walker, J., Mitchell, T., Andrew, P., Prudhomme, M., Alloing, G., Hakenbeck, R., Morrison, D., Boulnois, G. and Claverys, J.-P. 1992. A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae. Nucleic Acids Res. 20:3479-3483. https://doi.org/10.1093/nar/20.13.3479
- Muhire, B., Varsani, A. and Martin, D. P. 2014. SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS ONE 9:e108277. https://doi.org/10.1371/journal.pone.0108277
- Ntambo, M. S., Meng, J.-Y., Rott, P. C., Royer, M., Lin, L.-H., Zhang, H.-L. and Gao, S.-J. 2019. Identification and characterization of Xanthomonas albilineans causing sugarcane leaf scald in China using multilocus sequence analysis. Plant Pathol. 68:269-277. https://doi.org/10.1111/ppa.12951
- Pammel, L. H. 1895. Bacteriosis of Rutabaga (Bacillus campestris n. sp.). Iowa State Coll. Agric. Exp. Stn. Bull. 27:130-134.
- Popovic, T., Mitrovic, P., Jelusic, A., Dimkic, I., Marjanovic-Jeromela, A., Nikolic, I. and Stankovic, S. 2019. Genetic diversity and virulence of Xanthomonas campestris pv. campestris isolates from Brassica napus and six Brassica oleracea crops in Serbia. Plant Pathol. 68:1448-1457. https://doi.org/10.1111/ppa.13064
- Rademaker, J. L. W. and De Bruijn, F. J. 1997. Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. In: DNA markers: protocols, applications and overviews, eds. By G. Caetano-Anolles and P. M. Gresshoff, pp. 151-171. John Wiley & Sons, Hoboken, NJ, USA.
- Rademaker, J. L., Hoste, B., Louws, F. J., Kersters, K., Swings, J., Vauterin, L., Vauterin, P. and de Bruijn, F. J. 2000. Comparison of AFLP and rep-PCR genomic fingerprinting with DNADNA homology studies: Xanthomonas as a model system. Int. J. Syst. Evol. Microbiol. 50:665-677. https://doi.org/10.1099/00207713-50-2-665
- Rathaur, P. S., Singh, D., Raghuwanshi, R. and Yadava, D. K. 2015. Pathogenic and genetic characterization of Xanthomonas campestris pv. campestris races based on rep-PCR and multilocus sequence analysis. J. Plant Pathol. Microbiol. 6:317.
- Restrepo, S., Duque, M., Tohme, J. and Verdier, V. 1999. AFLP fingerprinting: an efficient technique for detecting genetic variation of Xanthomonas axonopodis pv. manihotis. Microbiology 145:107-114. https://doi.org/10.1099/13500872-145-1-107
- Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725-2729. https://doi.org/10.1093/molbev/mst197
- Urwin, R. and Maiden, M. C. J. 2003. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol. 11:479-487. https://doi.org/10.1016/j.tim.2003.08.006
- Versalovic, J., Koeuth, T. and Lupski, J. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831. https://doi.org/10.1093/nar/19.24.6823
- Versalovic, J., Schneider, M., de Bruijn, F. J. and Lupski, J. R. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell Biol. 5:25-40.
- Vicente, J. G., Conway, J., Roberts, S. J. and Taylor, J. D. 2001. Identification and origin of Xanthomonas campestris pv. campestris races and related pathovars. Phytopathology 91:492-499. https://doi.org/10.1094/PHYTO.2001.91.5.492
- Williams, P. H. 1980. Black rot: a continuing threat to world crucifers. Plant Dis. 64:736-742. https://doi.org/10.1094/PD-64-736
- Zhang, Y., Li, P. J., Zhou, H. M. and Li, B. J. 2011. The occurrence and prevention of bacterial black rot of cruciferous vegetables by Dr. Li Baoju. China Veg. 17:23-25 (in Chinese).