Mycobiology

The Korean Society of Mycology (한국균학회)
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Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound

  • Park, Sook-Young (Department of Plant Medicine, Sunchon National University) ;
  • Jeon, Jongbum (Department of Agricultural Biotechnology, Interdisciplinary Program in Agricultural Genomics, Center for Fungal Genetic Resources, and Center for Fungal Pathogenesis, Seoul National University) ;
  • Kim, Jung A (Animal Resources Division, National Institute of Biological Resources) ;
  • Jeon, Mi Jin (Microorganism Resources Division, National Institute of Biological Resources) ;
  • Yu, Nan Hee (Department of Agricultural Chemistry, Institute of Environmentally Friendly Agriculture, Chonnam National University) ;
  • Kim, Seulbi (Department of Agricultural Chemistry, Institute of Environmentally Friendly Agriculture, Chonnam National University) ;
  • Park, Ae Ran (Department of Agricultural Chemistry, Institute of Environmentally Friendly Agriculture, Chonnam National University) ;
  • Kim, Jin-Cheol (Department of Agricultural Chemistry, Institute of Environmentally Friendly Agriculture, Chonnam National University) ;
  • Lee, Yerim (Department of Plant Medicine, Sunchon National University) ;
  • Kim, Youngmin (Department of Plant Medicine, Sunchon National University) ;
  • Choi, Eu Ddeum (Department of Plant Medicine, Sunchon National University) ;
  • Jeong, Min-Hye (Department of Plant Medicine, Sunchon National University) ;
  • Lee, Yong-Hwan (Department of Agricultural Biotechnology, Interdisciplinary Program in Agricultural Genomics, Center for Fungal Genetic Resources, and Center for Fungal Pathogenesis, Seoul National University) ;
  • Kim, Soonok (Microorganism Resources Division, National Institute of Biological Resources)
  • Received : 2021.02.01
  • Accepted : 2021.04.05
  • Published : 2021.06.30
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Abstract

An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted.

Keywords

Acknowledgement

This work was supported by the National Institute of Biological Resources, funded by the Ministry of Environment of the Republic of Korea (projects NIBR201921101 and NIBR202021101).

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