References
- Abbas, T. and Dutta, A. (2009). p21 in cancer: intricate networks and multiple activities. Nat. Rev. Cancer 9, 400-414. https://doi.org/10.1038/nrc2657
- Berezowsky, C. and Bag, J. (1992). Slow troponin C is present in both muscle and nonmuscle cells. Biochem. Cell Biol. 70, 691-697. https://doi.org/10.1139/o92-105
- Brainard, J. and Farver, C. (2019). The diagnosis of non-small cell lung cancer in the molecular era. Mod. Pathol. 32(Suppl 1), 16-26. https://doi.org/10.1038/s41379-018-0156-x
- Brewer, L.A. (1977). Patterns of survival in lung cancer. Chest 71, 644-650. https://doi.org/10.1378/chest.71.5.644
- Cancer Genome Atlas Research Network (2014). Comprehensive molecular profiling of lung adenocarcinoma. Nature 511, 543-550. https://doi.org/10.1038/nature13385
- Casas-Tinto, S., Maraver, A., Serrano, M., and Ferrus, A. (2016). Troponin-I enhances and is required for oncogenic overgrowth. Oncotarget 7, 52631-52642. https://doi.org/10.18632/oncotarget.10616
- Cerami, E., Gao, J., Dogrusoz, U., Gross, B.E., Sumer, S.O., Aksoy, B.A., Jacobsen, A., Byrne, C.J., Heuer, M.L., Larsson, E., et al. (2012). The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2, 401-404. https://doi.org/10.1158/2159-8290.CD-12-0095
- Chase, P.B., Szczypinski, M.P., and Soto, E.P. (2013). Nuclear tropomyosin and troponin in striated muscle: new roles in a new locale? J. Muscle. Res. Cell Motil. 34, 275-284. https://doi.org/10.1007/s10974-013-9356-7
- Chen, C., Liu, J.B., Bian, Z.P., Xu, J.D., Wu, H.F., Gu, C.R., Shi, Y., Zhang, J.N., Chen, X.J., and Yang, D. (2014). Cardiac troponin I is abnormally expressed in non-small cell lung cancer tissues and human cancer cells. Int. J. Clin. Exp. Pathol. 7, 1314-1324.
- Gao, J., Aksoy, B.A., Dogrusoz, U., Dresdner, G., Gross, B., Sumer, S.O., Sun, Y., Jacobsen, A., Sinha, R., Larsson, E., et al. (2013). Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci. Signal. 6, pl1.
- Geissmann, Q. (2013). OpenCFU, a new free and open-source software to count cell colonies and other circular objects. PLoS One 8, e54072. https://doi.org/10.1371/journal.pone.0054072
- Hanzelmann, S., Castelo, R., and Guinney, J. (2013). GSVA: gene set variation analysis for microarray and RNA-seq data. BMC Bioinformatics 14, 7. https://doi.org/10.1186/1471-2105-14-S16-S7
- Hata, T., Yamamoto, H., Ngan, C.Y., Koi, M., Takagi, A., Damdinsuren, B., Yasui, M., Fujie, Y., Matsuzaki, T., Hemmi, H., et al. (2005). Role of p21waf1/cip1 in effects of oxaliplatin in colorectal cancer cells. Mol. Cancer Ther. 4, 1585-1594. https://doi.org/10.1158/1535-7163.MCT-05-0011
- Johnston, J.R., Chase, P.B., and Pinto, J.R. (2018). Troponin through the looking-glass: emerging roles beyond regulation of striated muscle contraction. Oncotarget 9, 1461-1482. https://doi.org/10.18632/oncotarget.22879
- Jung, Y., Jun, Y., Lee, H.Y., Kim, S., Keum, J., Lee, Y.S., Cho, Y.B., Lee, S., and Kim, J. (2015a). Characterization of SLC22A18 as a tumor suppressor and novel biomarker in colorectal cancer. Oncotarget 6, 25368-25380. https://doi.org/10.18632/oncotarget.4681
- Jung, Y., Yong, S., Kim, P., Lee, H.Y., Keum, J., Lee, S., and Kim, J. (2015b). VAMP2-NRG1 fusion gene is a novel oncogenic driver of non-small-cell lung adenocarcinoma. J. Thorac. Oncol. 10, 1107-1111. https://doi.org/10.1097/jto.0000000000000544
- Kim, J., Lo, L., Dormand, E., and Anderson, D.J. (2003). SOX10 maintains multipotency and inhibits neuronal differentiation of neural crest stem cells. Neuron 38, 17-31. https://doi.org/10.1016/S0896-6273(03)00163-6
- Law, C.W., Chen, Y., Shi, W., and Smyth, G.K. (2014). Voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15, R29. https://doi.org/10.1186/gb-2014-15-2-r29
- Leung, C.S., Yeung, T.L., Yip, K.P., Pradeep, S., Balasubramanian, L., Liu, J., Wong, K.K., Mangala, L.S., Armaiz-Pena, G.N., Lopez-Berestein, G., et al. (2014). Calcium-dependent FAK/CREB/TNNC1 signalling mediates the effect of stromal MFAP5 on ovarian cancer metastatic potential. Nat. Commun. 5, 5092. https://doi.org/10.1038/ncomms6092
- Li, B. and Dewey, C.N. (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323. https://doi.org/10.1186/1471-2105-12-323
- Liberzon, A., Subramanian, A., Pinchback, R., Thorvaldsdottir, H., Tamayo, P., and Mesirov, J.P. (2011). Molecular signatures database (MSigDB) 3.0. Bioinformatics 27, 1739-1740. https://doi.org/10.1093/bioinformatics/btr260
- Ma, Y., Silveri, L., LaCava, J., and Dokudovskaya, S. (2017). Tumor suppressor NPRL2 induces ROS production and DNA damage response. Sci. Rep. 7, 15311. https://doi.org/10.1038/s41598-017-15497-0
- Moses, M.A., Wiederschain, D., Wu, I., Fernandez, C.A., Ghazizadeh, V., Lane, W.S., Flynn, E., Sytkowski, A., Tao, T., and Langer, R. (1999). Troponin I is present in human cartilage and inhibits angiogenesis. Proc. Natl. Acad. Sci. U. S. A. 96, 2645-2650. https://doi.org/10.1073/pnas.96.6.2645
- Normand, G., Hemmati, P.G., Verdoodt, B., von Haefen, C., Wendt, J., Guner, D., May, E., Dorken, B., and Daniel, P.T. (2005). p14ARF induces G2 cell cycle arrest in p53- and p21-deficient cells by down-regulating p34cdc2 kinase activity. J. Biol. Chem. 280, 7118-7130. https://doi.org/10.1074/jbc.M412330200
- Pao, W. and Girard, N. (2011). New driver mutations in non-small-cell lung cancer. Lancet Oncol. 12, 175-180. https://doi.org/10.1016/S1470-2045(10)70087-5
- Sahota, V.K., Grau, B.F., Mansilla, A., and Ferrus, A. (2009). Troponin I and Tropomyosin regulate chromosomal stability and cell polarity. J. Cell Sci. 122(Pt 15), 2623-2631. https://doi.org/10.1242/jcs.050880
- Schmidt, K., Hoffend, J., Altmann, A., Kiessling, F., Strauss, L., Koczan, D., Mier, W., Eisenhut, M., Kinscherf, R., and Haberkorn, U. (2006). Troponin I overexpression inhibits tumor growth, perfusion, and vascularization of morris hepatoma. J. Nucl. Med. 47, 1506-1514.
- Schneider, C.A., Rasband, W.S., and Eliceiri, K.W. (2012). NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9, 671-675. https://doi.org/10.1038/nmeth.2089
- Shimizu, K., Yoshida, J., Nagai, K., Nishimura, M., Ishii, G., Morishita, Y., and Nishiwaki, Y. (2005). Visceral pleural invasion is an invasive and aggressive indicator of non-small cell lung cancer. J. Thorac. Cardiovasc. Surg. 130, 160-165. https://doi.org/10.1016/j.jtcvs.2004.11.021
- Siegel, R.L., Miller, K.D., and Jemal, A. (2018). Cancer statistics, 2018. CA Cancer J. Clin. 68, 7-30. https://doi.org/10.3322/caac.21442
- Wang, K., Singh, D., Zeng, Z., Coleman, S.J., Huang, Y., Savich, G.L., He, X., Mieczkowski, P., Grimm, S.A., Perou, C.M., et al. (2010). MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic. Acids. Res. 38, e178. https://doi.org/10.1093/nar/gkq622
- Yu, N., Yong, S., Kim, H.K., Choi, Y.L., Jung, Y., Kim, D., Seo, J., Lee, Y.E., Baek, D., Lee, J., et al. (2019). Identification of tumor suppressor miRNAs by integrative miRNA and mRNA sequencing of matched tumor-normal samples in lung adenocarcinoma. Mol. Oncol. 13, 1356-1368. https://doi.org/10.1002/1878-0261.12478
Cited by
- Identification of Differentially Expressed and Prognostic lncRNAs for the Construction of ceRNA Networks in Lung Adenocarcinoma vol.2021, 2020, https://doi.org/10.1155/2021/2659550