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Comparative proteomic analysis of Celastrus hindsii Benth. phenotypes reveals an intraspecific variation

  • Nguyen, Van Huy (Institute of Applied Research and Development, Hung Vuong University) ;
  • Pham, Thanh Loan (Institute of Applied Research and Development, Hung Vuong University) ;
  • Ha, Thi Tam Tien (Institute of Applied Research and Development, Hung Vuong University) ;
  • Hoang, Thi Le Thu (Institute of Applied Research and Development, Hung Vuong University)
  • Received : 2020.11.04
  • Accepted : 2020.12.02
  • Published : 2020.12.31

Abstract

In Vietnam, Celastrus hindsii Benth, a medicinal plant rich in secondary metabolites, has been used to alleviate distress caused by ulcers, tumors, and inflammation for generations. The occurrence of two phenotypes, Broad Leaf (BL) and Narrow Leaf (NL), has raised questions about the selection of appropriate varieties for conservation and crop improvement to enhance medicinal properties. This study examined molecular differences in C. hindsii by comparing protein profiles between the NL and BL types using 2D-PAGE and MS. Peptide sequences and proteins were identified by matching MS data against the MSPnr100 databases and verified using the MultiIdent tool on ExPASy and the Blast2GO software. Our results revealed notable variations in protein abundance between the NL and BL proteomes. Selected proteins were confidently identified from 12 protein spots, thereby highlighting the molecular variation between NL and BL proteomes. Upregulated proteins in BL were found to be associated with flavonoid and amino acid biosynthesis as well as nuclease metabolism, which probably attributed to the intraspecific variations. Several bioactive proteins identified in this study can have applications in cancer therapeutics. Therefore, the BL phenotype characterized by healthier external morphological features has higher levels of bioactive compounds and could be better suited for medicinal use.

Keywords

Acknowledgement

The authors are grateful to the Ministry of Education and Training for financial assistance and colleagues from the Institute of Applied Research and Development, Hung Vuong University, Vietnam for technical support during the project.

References

  1. Alam I, Sharmin S, Kim K-H, Kim Y-G, Lee J, Lee B-H (2013) An improved plant leaf protein extraction method for high resolution two-dimensional polyacrylamide gel electrophoresis and comparative proteomics. Biotech Histochem 88:61-75
  2. Amudha P, Jayakumar M, Kulandaivelu G (2005) Impacts of ambient solar uv (280-400 nm) radiation on three tropical legumes. J Plant Biol 48:284-291
  3. Anca IA, Fromentin J, Bui QT, Mhiri C, Grandbastien MA, Simon-Plas F (2014) Different tobacco retrotransposons are specifically modulated by the elicitor cryptogein and reactive oxygen species. J Plant Physiol 171:1533-1540
  4. Anguraj Vadivel AK (2015) Gel-based proteomics in plants: time to move on from the tradition. Front Plant Sci 6:2-5
  5. Barkan A, Small I (2014) Pentatricopeptide repeat proteins in plants. Annu Rev Plant Biol 65:415-442
  6. Carpentier SC, Witters E, Laukens K, Deckers P, Swennen R, Panis B (2005) Preparation of protein extracts from recalcitrant plant tissues: An evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 5:2497-2507
  7. Champagne A, Rischer H, Oksman-Caldentey KM, Boutry M (2012) In-depth proteome mining of cultured Catharanthus roseus cells identifies candidate proteins involved in the synthesis and transport of secondary metabolites. Proteomics 12:3536-3547
  8. Chen Y, Xu Y, Luo W, Li W, Chen N, Zhang D, Chong K (2013) The F-Box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice. Plant Physiol 163:1673 LP - 1685
  9. Dai Q, Wang H (2006) "Cullin 4 makes its mark on chromatin." Cell Div 1:1-7
  10. De Filippis L, Magel E (2012) Identification of biochemical differences between the sapwood and transition zone in Robinia pseudoacacia L. by differential display of proteins. Holzforschung 66:543-549
  11. Franciosini A, Lombardi B, Iafrate S, Pecce V, Mele G, Lupacchini L, Rinaldi G, Kondou Y, Gusmaroli G, Aki S, Tsuge T, Deng X-W, Matsui M, Vittorioso P, Costantino P, Serino G (2013) The Arabidopsis COP9 signalosome interacting F-box Kelch 1 protein forms an scf ubiquitin ligase and regulates hypocotyl elongation. Mol Plant 6:1616-1629
  12. Galindo-Gonzalez L, Mhiri C, Deyholos MK, Grandbastien MA (2017) LTR-retrotransposons in plants: Engines of evolution. Gene 626:14-25
  13. Guo L, Nezames CD, Sheng L, Deng X, Wei N (2013) Cullin-RING ubiquitin ligase family in plant abiotic stress pathways. J Integr Plant Biol 55:21-30
  14. Harashima H, Schnittger A (2010) The integration of cell division, growth and differentiation. Curr Opin Plant Biol 13:66-74
  15. Hu X-Q, Han W, Han Z-Z, Liu Q-X, Xu X-K, Fu P, Li H-L (2014) A new macrocyclic lactone and a new quinoflavan from Celastrus hindsii. Phytochem Lett 7:169-172
  16. Jacobs DI, Gaspari M, Van Der Greef J, Van Der Heijden R, Verpoorte R (2005) Proteome analysis of the medicinal plant Catharanthus roseus. Planta 221:690-704
  17. Jia L, Yan F, Cao W, Chen Z, Zheng H, Li H, Pan Y, Narula N, Ren X, Li H, Zhou P (2017) Dysregulation of CUL4A and CUL4B ubiquitin ligases in lung cancer. J Biol Chem 292:2966-2978
  18. Jiang X, Hou H, Zhang S, Liu Y, Wang H, Deng WW, Zhou S, Wu Y, Shen F, Gao L, Xia T (2017) Comparison of phenolic compound accumulation profiles in eight evergreen woody core eudicots indicating the diverse ecological adaptability of Camellia sinensis. Sci Hortic (Amsterdam) 219:200-206
  19. Kumar M, Padula MP, Davey P, Pernice M, Jiang Z, Sablok G, Contreras-Porcia L, Ralph PJ (2017) Proteome analysis reveals extensive light stress-response reprogramming in the seagrass zostera muelleri (Alismatales, Zosteraceae) metabolism. Front Plant Sci 7:2023
  20. Li C-L, Yang W-Z, Shi Z, Yuan HS (2018) Tudor staphylococcal nuclease is a structure-specific ribonuclease that degrades RNA at unstructured regions during microRNA decay. Rna rna.064501.117
  21. Li E, Ling J, Wang G, Xiao J, Yang Y, Mao Z, Wang X, Xie B (2015) Comparative proteomics analyses of two races of Fusarium oxysporum f. sp. conglutinans that differ in pathogenicity. Sci Rep 5:13663
  22. Li M, Tang D, Wang K, Wu X, Lu L, Yu H, Gu M, Yan C, Cheng Z (2011) Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice. Plant Biotechnol J 9:1002-1013
  23. Liu CL, Yang PS, Chien MN, Chang YC (2018) Expression of serine peptidase inhibitor Kunitz type 1 in differentiated thyroid cancer. Histochem Cell Bio149:635-644
  24. Ly TN, Shimoyamada M, Yamauchi R (2006) Isolation and characterization of rosmarinic acid oligomers in Celastrus hindsii Benth. leaves and their antioxidative activity. J Agric Food Chem 54:3786-93
  25. Macedo MLR, Ribeiro SFF, Taveira GB, Gomes VM, Barros KMCA, Maria-Neto S (2016) Antimicrobial activity of ILTI, a Kunitz-type trypsin inhibitor from Inga laurina (SW.) Willd. Curr Microbiol 72:538-544
  26. Mandal A, Mishra AK, Dulani P, Muthamilarasan M, Shweta S, Prasad M (2018) Identification, characterization, expression profiling, and virus-induced gene silencing of armadillo repeat-containing proteins in tomato suggest their involvement in tomato leaf curl New Delhi virus resistance. Funct Integr Genomics 18:101-111
  27. Manna S (2015) An overview of pentatricopeptide repeat proteins and their applications. Biochimie 113:93-99
  28. Matsunaga W, Ohama N, Tanabe N, Masuta Y, Masuda S, Mitani N, Yamaguchi-Shinozaki K, Ma JF, Kato A, Ito H (2015) A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis. Front Plant Sci 6:1-12
  29. Miyazaki Y, Yoshizumi T, Takase T, Matsui M, Kiyosue T (2011) Overexpression of LOV KELCH PROTEIN 2 enhances cell elongation and increases cell number and ploidy in the hypocotyl of Arabidopsis thaliana. Plant Biotechnol 28:267-272
  30. Pokharel D, Padula MP, Lu JF, Jaiswal R, Djordjevic SP, Bebawy M (2016) The role of CD44 and ERM proteins in expression and functionality of P-glycoprotein in breast cancer cells. Molecules 21: 290
  31. Price SJ, Pangloli P, Krishnan HB, Dia VP (2016) Kunitz trypsin inhibitor in addition to Bowman-Birk inhibitor influence stability of lunasin against pepsin-pancreatin hydrolysis. Food Res Int 90:205-215
  32. Rocheta M, Carvalho L, Viegas W, Morais-Cec??lio L (2012) Corky, a gypsy-like retrotransposon is differentially transcribed in Quercus suber tissues. BMC Res Notes 5:1-6
  33. Roodbarkelari F, Bramsiepe J, Weinl C, Marquardt S, Novak B, Jakoby MJ, Lechner E, Genschik P, Schnittger A (2010) CULLIN 4-RING FINGER-LIGASE plays a key role in the control of endoreplication cycles in Arabidopsis trichomes. Proc Natl Acad Sci 107:15275-15280
  34. Roy UK, Lavignac N, Rahman AM, Nielsen BV (2018) Purification of lectin and Kunitz trypsin inhibitor from soya seeds. J Chromatogr Sci 56:36-442
  35. Singh N, Sharma A (2017) Turmeric (Curcuma longa): miRNAs and their regulating targets are involved in development and secondary metabolite pathways. Comptes Rendus - Biol 340:481-491
  36. Singh N, Srivastava S, Sharma A (2016) Identification and analysis of miRNAs and their targets in ginger using bioinformatics approach. Gene 575:570-576
  37. Skaar I, Adaku C, Jordheim M, Byamukama R, Kiremire B, Andersen OM (2014) Purple anthocyanin colouration on lower (abaxial) leaf surface of Hemigraphis colorata (Acanthaceae). Phytochemistry 105:141-146
  38. Thuy TT, Cuong NH, Sung T Van (2007) Triterpenes from Celastrus hindsii Benth. J Chem 373-376
  39. Vanderschuren H, Lentz E, Zainuddin I, Gruissem W (2013) Proteomics of model and crop plant species: Status, current limitations and strategic advances for crop improvement. J Proteomics 93:5-19
  40. Viet TD, Xuan TD, Van TM, Andriana Y, Rayee R (2019) GC-MS and ESI-MS fingerprints of Celastrus. Medicines 6:1-15
  41. Voronova A, Belevich V, Jansons A, Rungis D (2014) Stressinduced transcriptional activation of retrotransposon-like sequences in the Scots pine (Pinus sylvestris L.) genome. Tree Genet Genomes 10:937-951
  42. Wang L, Pan D, Li J, Tan F, Hoffmann-Benning S, Liang W, Chen W (2015) Proteomic analysis of changes in the Kandelia candel chloroplast proteins reveals pathways associated with salt tolerance. Plant Sci 231:159-172
  43. Wang W, Lu JJ, Gu C, Zhou L, Liu S (2013) Performing isoelectric focusing and simultaneous fractionation of proteins on a rotary valve followed by sodium dodecyl-polyacrylamide gel electrophoresis. Anal Chem 85:6603-7
  44. Wang X, Li X, Deng X, Han H, Shi W, Li Y (2007) A protein extraction method compatible with proteomic analysis for the euhalophyte Salicornia europaea. Electrophoresis 28:3976-87
  45. Wen PF, Ji W, Gao MY, Niu TQ, Xing YF, Niu XY (2015) Accumulation of flavanols and expression of leucoanthocyanidin reductase induced by postharvest UV-C irradiation in grape berry. Genet Mol Res 14:7687-7695
  46. Wilkins MR, Williams KL (1997) Cross-species protein identification using amino acid composition, peptide mass fingerprinting, isoelectric point and molecular mass: a theoretical evaluation. J Theor Biol 186:7-15
  47. Witwer KW, Hirschi K.D (201 Transfer and functional consequences of dietary microRNAs invertebrates: Concepts in search of corroboration. BioEssays 36:394-406
  48. Wu SR, Teng CH, Tu YT, Ko CJ, Cheng TS, Lan SW, Lin HY, Lee MS (2017) The Kunitz domain I of hepatocyte growth factor activator inhibitor-2 inhibits matriptase activity and invasive ability of human prostate cancer cells. Sci Rep 7:1-19
  49. Xing A, Pan L, Gao J (2018) p100 functions as a metastasis activator and is targeted by tumour suppressing microRNA-320a in lung cancer. Thorac Cancer, 9:152-158
  50. Zhang J, Xiao J, Li Y, Su B, Xu H, Shan X, Song C, Xie J, Li R, Sharwood R (2017) PDM3, a pentatricopeptide repeat-containing protein, affects chloroplast development. J Exp Bot 267:27-37
  51. Zhang K, Novak O, Wei Z, Gou M, Zhang X, Yu Y, Yang H, Cai Y, Strnad M, Liu C-J (2014) Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins. Nat Commun 5:3274
  52. Zsigmond L, Rigo G, Szarka A, Szekely G, Otvos K, Darula Z, Medzihradszky KF, Koncz C, Koncz Z, Szabados L (2008) Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. Plant Physiol 146:1721-1737