Molecules and Cells

  • 제43권1호
  • /
  • Pages.86-95
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  • 2020
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  • 1016-8478(pISSN)
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  • 0219-1032(eISSN)
한국분자세포생물학회 (Korean Society for Molecular and Cellular Biology)
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Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity

  • Lee, HyeJin (Personal Genomics Institute, Genome Research Foundation) ;
  • Kim, Jungeun (Personal Genomics Institute, Genome Research Foundation) ;
  • Weber, Jessica A. (Department of Genetics, Harvard Medical School) ;
  • Chung, Oksung (Clinomics) ;
  • Cho, Yun Sung (Clinomics) ;
  • Jho, Sungwoong (Personal Genomics Institute, Genome Research Foundation) ;
  • Jun, JeHoon (Clinomics) ;
  • Kim, Hak-Min (KOGIC, Ulsan National Institute of Science and Technology) ;
  • Lim, Jeongheui (National Science Museum, Ministry of Science and ICT) ;
  • Choi, Jae-Pil (Personal Genomics Institute, Genome Research Foundation) ;
  • Jeon, Sungwon (KOGIC, Ulsan National Institute of Science and Technology) ;
  • Blazyte, Asta (KOGIC, Ulsan National Institute of Science and Technology) ;
  • Edwards, Jeremy S. (Chemistry and Chemical Biology, UNM Comprehensive Cancer Center, University of New Mexico) ;
  • Paek, Woon Kee (National Science Museum, Ministry of Science and ICT) ;
  • Bhak, Jong (Personal Genomics Institute, Genome Research Foundation)
  • 투고 : 2019.08.26
  • 심사 : 2019.12.18
  • 발행 : 2020.01.31
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초록

The red-crowned crane (Grus japonensis) is an endangered, large-bodied crane native to East Asia. It is a traditional symbol of longevity and its long lifespan has been confirmed both in captivity and in the wild. Lifespan in birds is known to be positively correlated with body size and negatively correlated with metabolic rate, though the genetic mechanisms for the red-crowned crane's long lifespan have not previously been investigated. Using whole genome sequencing and comparative evolutionary analyses against the grey-crowned crane and other avian genomes, including the long-lived common ostrich, we identified redcrowned crane candidate genes with known associations with longevity. Among these are positively selected genes in metabolism and immunity pathways (NDUFA5, NDUFA8, NUDT12, SOD3, CTH, RPA1, PHAX, HNMT, HS2ST1, PPCDC, PSTK CD8B, GP9, IL-9R, and PTPRC). Our analyses provide genetic evidence for low metabolic rate and longevity, accompanied by possible convergent adaptation signatures among distantly related large and long-lived birds. Finally, we identified low genetic diversity in the red-crowned crane, consistent with its listing as an endangered species, and this genome should provide a useful genetic resource for future conservation studies of this rare and iconic species.

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피인용 문헌

  1. Lifespan Extension in Long-Lived Vertebrates Rooted in Ecological Adaptation vol.9, 2020, https://doi.org/10.3389/fcell.2021.704966
  2. Comprehensive transcriptome characterization of Grus japonensis using PacBio SMRT and Illumina sequencing vol.11, pp.1, 2020, https://doi.org/10.1038/s41598-021-03474-7