DOI QR코드

DOI QR Code

Genetic Distances between Two Cultured Penaeid Shrimp (Penaeus chinensis) Populations Determined by PCR Analysis

  • Yoon, Jong-Man (Dept. of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University)
  • 투고 : 2019.04.05
  • 심사 : 2019.04.28
  • 발행 : 2019.06.30

초록

Genomic DNA samples were obtained from cultured penaeid shrimp (Penaeus chinensis) individuals such as fresh shrimp population (FSP) and deceased shrimp population (DSP) from Shinan regions in the Korean peninsula. In this study, 233 loci were identified in the FSP shrimp population and 162 in the DSP shrimp population: 33 specific loci (14.2%) in the FSP shrimp population and 42 (25.9%) in the DSP population. A total of 66 (an average of 9.4 per primer) were observed in DSP shrimp population, whereas 55 unique loci to each population (an average of 7.9 per primer) in the FSP shrimp population. The Hierarchical dendrogram extended by the seven oligonucleotides primers indicates three genetic clusters: cluster 1 (FRESH 01, 02, and DECEASED 12, 13, 15, 16, 17, 19, 20, 22) and cluster 2 (FRESH 03, 04, 05, 06, 07, 08, 09, 10, 11, and DECEASED 14, 18, 21). Among the twenty-two shrimp, the shortest genetic distance that exposed significant molecular differences was between individuals 20 and 16 from the DSP shrimp population (genetic distance=0.071), while the longest genetic distance among the twenty-two individuals that established significant molecular differences was between individuals FRESH no. 02 and FRESH no. 04 (genetic distance=0.477). In due course, PCR analysis has revealed the significant genetic distance among two penaeid shrimp populations.

키워드

참고문헌

  1. Callejas C, Ochando MD (1998) Identification of Spanish barbel species using the RAPD technique. J Fish Biol 53:208-215. https://doi.org/10.1111/j.1095-8649.1998.tb00121.x
  2. Huang BX, Peakall R, Hanna PJ (2000) Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers. Mar Biol 136:207-216. https://doi.org/10.1007/s002270050678
  3. Jeffreys AJ, Morton DB (1987) DNA fingerprints of dogs and cats. Anim Genet 18:1-15. https://doi.org/10.1111/j.1365-2052.1987.tb00739.x
  4. Kim JY, Park CY, Yoon JM (2004) Genetic differences and DNA polymorphism in oyster (Crassostrea spp.) analysed by RAPD-PCR. Korean J Genet 26:123-134.
  5. Klinbunga S, Boonyapakdee A, Pratoomchat B (2000). Genetic diversity and species-diagnostic markers of mud crabs (Genus Scylla) in Eastern Thailand determined by RAPD analysis. Mar Biotechnol 2:180-187. https://doi.org/10.1007/s101269900023
  6. Mamuris Z, Stamatis C, Bani M, Triantaphyllidis C (1999) Taxonomic relationships between four species of the Mullidae family revealed by three genetic methods: Allozymes, random amplified polymorpic DNA and mitochondrial DNA. J Fish Biol 55:572-587. https://doi.org/10.1111/j.1095-8649.1999.tb00700.x
  7. McCormack GC, Powell R, Keegan BF (2000) Comparative analysis of two populations of the brittle star Amphiura filiformis (Echinodermata: Ophiuroidea) with different life history strategies using RAPD markers. Mar Biotechnol 2:100-106. https://doi.org/10.1007/s101269900013
  8. Muchmore ME, Moy GW, Swanson WJ, Vacquier VD (1998) Direct sequencing of genomic DNA for characterization of a satellite DNA in five species of Eastern Pacific abalone. Mol Mar Biol Biotechnol 7:1-6.
  9. Nebauer SG, del Castillo-Agudo L, Segura J (2000) An assessment of genetic relationships within the genus Digitalis based on PCR-generated RAPD markers. Theor Appl Genet 100:1209-1216. https://doi.org/10.1007/s001220051426
  10. Oh H, Yoon JM (2014) Genetic distances of three mollusk species investigated by PCR analysis. Dev Reprod 18:43-49. https://doi.org/10.12717/DR.2014.18.1.043
  11. Park SY, Park JS, Yoon JM (2005) Genetic differences and variations in slipper lobster (Ibacus ciliatus) and deep sea lobster (Puerulus sewelli) determined by RAPD analysis. Korean J Genet 27:307-317.
  12. Partis L, Wells RJ (1996) Identification of fish species using random amplified polymorphic DNA (RAPD). Mol Cell Probes 10:435-441. https://doi.org/10.1006/mcpr.1996.0060
  13. Ramesha KP, Saravanan T, Rao MK, Appannavar MM, Reddy AO (2002) Genetic distance among south Indian breeds of zebu cattle using random amplified DNA markers. Asian-Australas J Anim Sci 15:309-314. https://doi.org/10.5713/ajas.2002.309
  14. Song YJ, Yoon JM (2013) Genetic differences of three Pollicipes mitella populations identified by PCR analysis. Dev Reprod 17:199-205. https://doi.org/10.12717/DR.2013.17.3.199
  15. Tassanakajon A, Pongsomboon S, Jarayabhand P, Klinbunga S, Boonsaeng VV (1998) Genetic structure in wild populations of black tiger shrimp (Penaeus monodon) using randomly amplified polymorphic DNA analysis. J Mar Biotechnol 6:249-254.
  16. Welsh J, Petersen C, McClelland M (1991) Polymorphisms generated by arbitrarily primed PCR in the mouse: Application to strain identification and genetic mapping. Nucleic Acids Res 19:303-306. https://doi.org/10.1093/nar/19.2.303
  17. Yoke-Kqueen C, Radu S (2006) Random amplified polymorphic DNA analysis of genetically modified organisms. J Biotechnol 127:161-166. https://doi.org/10.1016/j.jbiotec.2006.06.001
  18. Yoon JM, Kim YH (2003a) Wide marsh clam (Corbicula spp.) populations from three sites analysed by RAPDPCR-AGE. Bull Electrochem 19:337-348.
  19. Yoon JM, Kim GW (2003b) Genetic differences between cultured and wild penaeid shrimp (Penaeus chinensis) populations analysed by RAPD-PCR. Korean J Genet 25:21-32.
  20. Yoon JM, Kim JY (2004) Genetic differences within and between populations of Korean catfish (S. asotus) and bullhead (P. fulvidraco) analyzed by RAPD-PCR. Asian-Australas J Anim Sci 17:1053-1061. https://doi.org/10.5713/ajas.2004.1053
  21. Yoon JM (2015) Geographical variations and genetic distances of three Saxidomus purpuratus populations ascertained by PCR analysis. Dev Reprod 19:259-264. https://doi.org/10.12717/DR.2015.19.4.259
  22. Yoon JM (2018) Genetic variations of intra- and betweenrazor clam Solen corneus population identified by PCR analysis. Dev Reprod 22:193-198. https://doi.org/10.12717/DR.2018.22.2.193
  23. Zhou L, Wang Y, Gui JF (2000) Analysis of genetic heterogeneity among five gynogenetic clones of silver crucian carp, Carassius auratus gibelio Bloch, based on detection of RAPD molecular markers. Cytogenet Cell Genet 88:133-139. https://doi.org/10.1159/000015506