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Development of Reverse Transcription Semi-nested PCR Primer Pairs for the Specific and Highly Sensitive Detection of Human Aichivirus A1

  • Lee, Siwon (Department of Biomedical Laboratory Science, Shinhan University) ;
  • Cho, Kyu Bong (Department of Biomedical Laboratory Science, Shinhan University)
  • Received : 2019.09.02
  • Accepted : 2019.11.25
  • Published : 2019.12.31

Abstract

Human Aichivirus A1 (HuAiV-A1) is a waterborne human pathogenic virus classified as Picornaviridae and Kobuvirus. In this study, we developed a method that can detect about 35 minutes faster with the same detection sensitivity level than the previously reported HuAiV-A1 diagnostic RT-PCR primer. The RT-PCR primer sets developed in this study are capable of detecting HuAiV-A1 at a level of about 100 ag and formed 563 bp amplification product. In addition, the RT-nested PCR method was able to amplify 410 bp using the RT-PCR product as a template. The detection sensitivity of our method was 10 times higher than the method with the highest detection sensitivity to date. Therefore, the detection method of HuAiV-A1 developed in this study is expected to be used in the water environment in which a small amount of virus exists. Also, this detection method is expected to be used as HuAiV-A1 diagnostic technology in both clinical and non-clinical field.

Keywords

References

  1. Alcala A, Vizzi E, Rodriguez-Diaz J, Zambrano JL, Betancourt W, Liprandi F. Molecular detection and characterization of Aichi viruses in sewage-polluted waters of Venezuela. Appl Environ Microbiol. 2010. 76: 4113-4115. https://doi.org/10.1128/AEM.00501-10
  2. Cho KB. Development of nested PCR primer set for the specific and highly sensitive detection of human Parvovirus B19. Biomed. Sci. Lett. 2018. 24: 390-397. https://doi.org/10.15616/BSL.2018.24.4.390
  3. Guyader FSL, Le Saux JC, Ambert-Balay K, Krol J, Serais O, Parnaudeau S, Giraudon H, Delmas G, Pommepuy M, Pothier P, Atmar RL. Aichi virus, Norovirus, Astrovirus, Enterovirus, and Rotavirus involved in clinical cases from a french oysterrelated gastroenteritis outbreak. J Clin Microbiol. 2008. 46: 4011-4017. https://doi.org/10.1128/JCM.01044-08
  4. Khamrin P, Maneekarn N. Epidemiology of human and animal kobuviruses. Virus Dis. 2014. 25: 195-200. https://doi.org/10.1007/s13337-014-0200-5
  5. Khamrin P, Okame M, Thongprachum A, Nantachit N, Nishimura S, Okitsu S, Maneekarn N, Ushijima H. A single-tube multiplex PCR for rapid detection in feces of 10 viruses causing diarrhea. J Virol Methods. 2011. 173: 390-393. https://doi.org/10.1016/j.jviromet.2011.02.012
  6. Lodder WJ, Rutjes SA, Takumi K, de Roda Husman AM. Aichi virus in sewage and surface water, the Netherlands. Emerg Infect Dis. 2013. 19: 1222-1230. https://doi.org/10.3201/eid1908.130312
  7. NIER. Development and verification of genetically diagnostic method for the detection of non-regulated viruses from water environment (I). 2016. pp. 1-21. NIER, Incheon, Korea.
  8. Oh DY, Silva PA, Hauroeder B, Diedrich S, Cardoso DDP, Schreier E. Molecular characterization of the first Aichi viruses isolated in Europe and in South America. Arch Virol. 2006. 151: 1199-1206. https://doi.org/10.1007/s00705-005-0706-7
  9. Pham NT. Study on Aichi virus, parechovirus, and bocavirus detected in children with acute gastroenteritis in Japan, Bangladesh, Thailand, Vietnam, and Sri Lanka. Tokyo University. 2011. Masters dissertation.
  10. Reuter G, Boldizsar A, Papp G, Pankovics P. Detection of Aichi virus shedding in a child with enteric and extraintestinal symptoms in Hungary. Arch Virol. 2009. 154: 1529-1532. https://doi.org/10.1007/s00705-009-0473-y
  11. Saikruang W, Khamrin P, Suantai B, Ushijima H, Maneekarn N. Molecular detection and characterization of Aichivirus A in adult patients with diarrhea in Thailand. J Med Virol. 2014. 86: 983-987. https://doi.org/10.1002/jmv.23904
  12. Santos N, Mendes GS, Silva RC, Pena GA, Rojas M, Amorim AR, Lima DP. Salivirus and aichivirus A infections in children with gastroenteritis in Brazil. Clin Microbiol Infect. 2015. 21: 799.e1-799.e3. https://doi.org/10.1016/j.cmi.2015.04.004
  13. Yamashita T, Adachi H, Hirose E, Nakamura N, Ito M, Yasui Y, Kobayashi S, Minagawa H. Molecular detection and nucleotide sequence analysis of a new Aichi virus closely related to canine kobuvirus in sewage samples. J Med Microbiol. 2014. 63: 715-720. https://doi.org/10.1099/jmm.0.070987-0
  14. Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K. Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol. 2003. 84: 3069-3077. https://doi.org/10.1099/vir.0.19266-0
  15. Yamashita T, Sugiyama M, Tsuzuki H, Sakae K, Suzuki Y, Miyazaki Y. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the picornavirus family associated with gastroenteritis in humans. J Clin Microbiol. 2000. 38: 2955-2961. https://doi.org/10.1128/JCM.38.8.2955-2961.2000
  16. Yip CCY, Lo KL, Que TL, Lee RA, Chan KH, Yuen KY, Woo PCY, Lau SKP. Epidemiology of human parechovirus, Aichi virus and salivirus in fecal samples from hospitalized children with gastroenteritis in Hong Kong. Virol J. 2014. 11: 182. https://doi.org/10.1186/1743-422X-11-182