참고문헌
- Bais, H. P., Broeckling, C. D. and Vivanco, J. M. 2008. Root exudates modulate plant-microbe interactions in the rhizosphere. In: Soil Biol., ed. by P. Karlovsky, pp. 241-252. Springer, Berlin, Germany.
- Bending, G. D., Rodriguez-Cruz, M. S. and Lincoln, S. D. 2007. Fungicide impacts on microbial communities in soils with contrasting management histories. Chemosphere 69:82-88. https://doi.org/10.1016/j.chemosphere.2007.04.042
- Bhattacharyya, D. and Lee, Y. H. 2016. The bacterial community in the rhizosphere of Kimchi cabbage restructured by volatile compounds emitted from rhizobacterium Proteus vulgaris JBLS202. Appl. Soil Ecol. 105:48-56. https://doi.org/10.1016/j.apsoil.2016.03.020
- Bhattacharyya, D., Garladinne, M. and Lee, Y. H. 2015. Volatile indole produced by rhizobacterium Proteus vulgaris JBLS202 stimulates growth of Arabidopsis thaliana through auxin, cytokinin, and brassinosteroid pathways. J. Plant. Growth. Regul. 34:158-168. https://doi.org/10.1007/s00344-014-9453-x
- Bulgarelli, D., Schlaeppi, K., Spaepen, S., van Themaat, E. V. L. and Schulze-Lefert, P. 2013. Structure and functions of the bacterial microbiota of plants. Annu. Rev. Plant Biol. 64:807-838. https://doi.org/10.1146/annurev-arplant-050312-120106
- Burgmann, H., Meier, S., Bunge, M., Widmer, F. and Zeyer, J. 2005. Effects of model root exudates on structure and activity of a soil diazotroph community. Environ. Microbiol. 7:1711-1724. https://doi.org/10.1111/j.1462-2920.2005.00818.x
- Chowdhury, S. P., Dietel, K., Rändler, M., Schmid, M., Junge, H., Borriss, R., Hartmann, A. and Grosch, R. 2013. Effects of Bacillus amyloliquefaciens FZB42 on lettuce growth and health under pathogen pressure and its impact on the rhizosphere bacterial community. PloS One 8:e68818. https://doi.org/10.1371/journal.pone.0068818
- Chun, J. and Goodfellow, M. 1995. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45:240-245. https://doi.org/10.1099/00207713-45-2-240
- Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. and Lim, Y. W. 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57:2259-2261. https://doi.org/10.1099/ijs.0.64915-0
- Dutta, S. and Podile, A. R. 2010. Plant growth promoting rhizobacteria (PGPR): Bugs to debug the root zone. Crit. Rev. Microbiol. 36:232-244. https://doi.org/10.3109/10408411003766806
- Dutta, S., Rani, T. S. and Podile, A. R. 2013. Root exudate-induced alterations in Bacillus cereus cell wall contribute to root colonization and plant growth promotion. Plos One 8:e78369. https://doi.org/10.1371/journal.pone.0078369
- Eddy, S. R. 2011. Accelerated profile HMM Searches. PLoS Comput. Biol. 7:e1002195. https://doi.org/10.1371/journal.pcbi.1002195
- Glick, B. R., Todorovic, B., Czarny, J., Cheng, Z., Duan, J. and McConkey, B. 2007. Promotion of plant growth by bacterial ACC deaminase. Crit. Rev. Plant Sci. 26:227-242. https://doi.org/10.1080/07352680701572966
- Hai, B., Diallo, N. H., Sall, S., Haesler, F., Schauss, K., Bonzi, M., Assigbetse, K., Chotte, J. L., Munch, J. C. and Schloter, M. 2009. Quantifcation of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems. Appl. Environ. Microbiol. 75:4993-5000. https://doi.org/10.1128/AEM.02917-08
- Heck, K. L. Jr., Van Belle, G. and Simberloff, D. 1975. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56:1459-1461. https://doi.org/10.2307/1934716
- Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2010. Culture-independent molecular techniques for soil microbial ecology. Soil Biol. Biochem. 42:878-887. https://doi.org/10.1016/j.soilbio.2010.02.019
- Hou, J., Liu, W., Wang, B., Wang, Q., Luo, Y. and Franks, A. E. 2015. PGPR enhanced phytoremediation of petroleum contaminated soil and rhizosphere microbial community response. Chemosphere 138:592-598. https://doi.org/10.1016/j.chemosphere.2015.07.025
- Huang, X. F., Chaparro, J. M., Reardon, K. F., Zhang, R., Shen, Q. and Vivanco, J. M. 2014. Rhizosphere interactions: root exudates, microbes, and microbial communities. Botany 92:267-275. https://doi.org/10.1139/cjb-2013-0225
- Kamilova, F., Kravchenko, L. V., Shaposhnikov, A. I., Azarova, T., Makarova, N. and Lugtenberg, B. 2006. Organic acids, sugars, and L-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria. Mol. Plant-Microbe Interact. 19:250-256. https://doi.org/10.1094/MPMI-19-0250
- Kang, Y., Shen, M., Wang, H. and Zhao, Q. 2013. A possible mechanism of action of plant growth promoting rhizobacteria (PGPR) strain Bacillus pumilus WP8 via regulation of soil bacterial community structure. J. Gen. Appl. Microbiol. 59:267-277. https://doi.org/10.2323/jgam.59.267
- Kim, M., Yoon, H., Kim, Y. E., Kim, Y. J., Kong, W. S. and Kim, J. G. 2014. Comparative analysis of bacterial diversity and communities inhabiting the fairy ring of Tricholoma matsutake by barcoded pyrosequencing. J. Appl. Microbiol. 117:699-710. https://doi.org/10.1111/jam.12572
- Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H., Yi, H., Won, S. and Chun, J. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultures species. Int. J. Syst. Evol. Microbiol. 62:716-721. https://doi.org/10.1099/ijs.0.038075-0
- Kozdroj, J. 2008. Microbial community in the rhizosphere of young maize seedlings is susceptible to the impact of introduced pseudomonads as indicated by FAME analysis. J. Gen. Appl. Microbiol. 54:205-210. https://doi.org/10.2323/jgam.54.205
- Kwon, S., Kim, T. S., Yu, G. H., Jung, J. H. and Park, H. D. 2010. Bacterial community composition and diversity of a full-scale integrated fxed-flm activated sludge system as investigated by pyrosequencing. J. Microbiol. Biotechnol. 20:1717-1723.
- LaSala, P. R., Segal, J., Han Faye, S., Tarrand Jeffrey, J. and Han Xiang, Y. 2007. First reported infections caused by three newly described genera in the family Xanthomonadaceae. J. Clin. Microbiol. 45:641-644. https://doi.org/10.1128/JCM.01938-06
- Li, W. Z. and Godzik, A. 2006. Cd-hit: a fast program for clustering and comparing large setsof protein or nucleotide sequences. Bioinformatics 22:1658-1659. https://doi.org/10.1093/bioinformatics/btl158
- Liu, D., Liu, Y., Fang, S. and Tian, Y. 2015. Tree species composition influenced microbial diversity and nitrogen availability in rhizosphere soil. Plant Soil Environ. 61:438-443.
- Lo, C. C. 2010. Effect of pesticides on soil microbial community. J. Environ. Sci. Health B 45:348-359.
- Lugtenberg, B. and Kamilova, F. 2009. Plant-growth promoting rhizobacteria. Annu. Rev. Microbiol. 63:541-556. https://doi.org/10.1146/annurev.micro.62.081307.162918
- Mendes, R., Kruijt, M., de Bruijn, I., Dekkers, E., van der Voort, M., Schneider, J. H., Piceno, Y. M., DeSantis, T. Z., Anderson, G. L., Bakker, P. A. and Raaijmakers, J. M. 2011. Deciphering the rhizosphere microbiome. Science 332:1097-1100. https://doi.org/10.1126/science.1203980
- Myers, E. W. and Miller, W. 1988. Optimal alignments in linear space. Comput. Appl. Biosci. 4:11-17.
- Nannipieri, P., Ascher, J., Ceccherini, M. T., Landi, L., Pietramellara, G. and Renella, G. 2003. Microbial diversity and soil functions. Eur. J. Soil Sci. 54:655-670. https://doi.org/10.1046/j.1351-0754.2003.0556.x
- Piromyou, P., Buranabanyat, B., Tantasawat, P., Tittabutr, P., Boonkerd, N. and Teaumroong, N. 2011. Effect of plant growth promoting rhizobacteria (PGPR) inoculation on microbial community structure in rhizosphere of forage corn cultivated in Thailand. Eur. J. Soil. Biol. 47:44-54. https://doi.org/10.1016/j.ejsobi.2010.11.004
- Qiu, M., Zhang, R., Xue, C., Zhang, S., Li, S., Zhang, N. and Shen, Q. 2012. Application of a novel bio-organic fertilizer can control Fusarium wilt by regulating the microbial community of cucumber rhizosphere soils. Biol. Fert. Soils 48:807-816. https://doi.org/10.1007/s00374-012-0675-4
- Sanguin, H., Sarniguet, A., Gazengel, K., Moenne-Loccoz, Y. and Grundmann, G. 2009. Rhizosphere bacterial communities associated with disease suppressiveness stages of take-all decline in wheat monoculture. New Phytol. 184:694-707. https://doi.org/10.1111/j.1469-8137.2009.03010.x
- Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., Sahl, J. W., Stres, B., Thallinger, G. G., Van Horn, D. J. and Weber, C. F. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541. https://doi.org/10.1128/AEM.01541-09
- Shen, Z., Ruan, Y., Chao, X., Zhang, J., Li, R. and Shen, Q. 2015. Rhizosphere microbial community manipulated by 2 years of consecutive biofertilizer application associated with banana Fusarium wilt disease suppression. Biol. Fert. Soils 51:553-562. https://doi.org/10.1007/s00374-015-1002-7
- Somers, E., Vanderleyden, J. and Srinivasan, M. 2004. Rhizosphere bacterial signalling: a love parade beneath our feet. Crit. Rev. Microbiol. 30:205-240. https://doi.org/10.1080/10408410490468786
- Sugiyama, A., Ueda, Y., Zushi, T., Takase, H. and Yazaki, K. 2014. Changes in the bacterial community of soybean rhizospheres during growth in the feld. PLoS One 9:e100709. https://doi.org/10.1371/journal.pone.0100709
- Trabelsi, D. and Mhamdi, R. 2013. Microbial inoculants and their impact on soil microbial communities: A review. Biomed. Res. Int. 2013:863240.
- Trivedi, P., He, Z., Van Nostrand, J. D., Albrigo, G., Zhou, J. and Wang, N. 2012. Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere. ISME J. 6:363-383. https://doi.org/10.1038/ismej.2011.100
- Unno, T., Jang, J., Han, D., Kim, J. H., Sadowsky, M. J., Kim, O. S., Chun, J. and Hur, H. G. 2010. Use of barcoded pyrosequencing and shared OTUs to determine sources of fecal bacteria in watersheds. Environ. Sci. Technol. 44:7777-7782. https://doi.org/10.1021/es101500z
- Wang, F., Liang, Y., Jiang, Y., Yang, Y., Xue, K., Xiong, J., Zhou, J. and Sun, B. 2015. Planting increases the abundance and structure complexity of soil core functional genes relevant to carbon and nitrogen cycling. Sci. Rep. 5:14345. https://doi.org/10.1038/srep14345
- Yu, S. M. and Lee, Y. H. 2013. Plant growth promoting rhizobacterium Proteus vulgaris JBLS202 stimulates the seedling growth of Chinese cabbage through indole emission. Plant Soil 370:485-495. https://doi.org/10.1007/s11104-013-1652-x
- Zinger, L., Shanhavaz, B., Baptist, F., Geremia, R. A. and Choler, P. 2009. Microbial diversity in alpine tundra soils correlates with snow cover dynamics. ISME J. 3:850-859. https://doi.org/10.1038/ismej.2009.20