한국농림기상학회지 (Korean Journal of Agricultural and Forest Meteorology)

  • 제19권3호
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  • Pages.164-173
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  • 2017
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  • 1229-5671(pISSN)
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  • 2288-1859(eISSN)
한국농림기상학회 (Korean Society of Agricultural and Forest Meteorology)
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국내 옥수수 재배적지 예측을 위한 R 기반의 기후적합도 모델 병렬화

R Based Parallelization of a Climate Suitability Model to Predict Suitable Area of Maize in Korea

  • 현신우 (서울대학교 식물생산과학부) ;
  • 김광수 (서울대학교 식물생산과학부)
  • Hyun, Shinwoo (Department of Plant Science, Seoul National University) ;
  • Kim, Kwang Soo (Department of Plant Science, Seoul National University)
  • 투고 : 2017.08.08
  • 심사 : 2017.09.22
  • 발행 : 2017.09.30
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초록

기후변화에 대응하기 위해 다양한 작부체계 구축이 시도될 수 있다. 변화하는 기후조건에서 작물들이 최적의 재배지에 배치될 수 있도록 기후적합도를 평가하는 것이 중요하다. EcoCrop 모델과 같은 월별 기후자료를 사용하여 여러 작물의 재배적합도들 계산하는 모델을 사용할 경우, 고해상도의 전자기후도를 사용하여 우리나라의 복잡한 지형을 고려한 재배 적합도 계산이 가능하다. 그러나, 방대한 기후자료의 처리를 위해 여러 전산자원들을 동시에 사용할 수 있는 병렬처리 기술 개발이 선행되어야 한다. 본 연구에서는 공개용 통계분석 도구인 R을 기반으로 EcoCrop 모델을 병렬로 구동할 수 있는 스크립트를 개발하고, 이를 격자형 기후자료에 적용하여 옥수수의 재배적지를 예측하였다. 병렬 처리를 시도한 결과 CPU 코어 개수 증가에 따른 처리 시간 단축이 선형적으로 이루어지지는 않았으나 처리시간의 상당부분을 단축할 수 있었다. 예를 들어 16개의 CPU를 사용하였을 때 이상적인 시간보다 1.5배가 넘는 시간이 소모되었으나 총 시간이 90%정도 단축되었다. 이러한 기술들을 작물 생육 모델들이 개발되지 않은 작물들에 적용할 경우, 기후변화 조건에 적응할 수 있는 작부체계 설계를 지원할 수 있을 것이다. 또한, 본 연구에서 사용한 기술들은 CPU 코어가 많은 워크스테이션에서 작동이 가능하나, 여러 컴퓨터를 연결한 중형 컴퓨터에 사용할 수 있는 MPI 기술을 적용할 수 있는 기술개발이 필요할 것이다.

Alternative cropping systems would be one of climate change adaptation options. Suitable areas for a crop could be identified using a climate suitability model. The EcoCrop model has been used to assess climate suitability of crops using monthly climate surfaces, e.g., the digital climate map at high spatial resolution. Still, a high-performance computing approach would be needed for assessment of climate suitability to take into account a complex terrain in Korea, which requires considerably large climate data sets. The objectives of this study were to implement a script for R, which is an open source statistics analysis platform, in order to use the EcoCrop model under a parallel computing environment and to assess climate suitability of maize using digital climate maps at high spatial resolution, e.g., 1 km. The total running time reduced as the number of CPU (Central Processing Unit) core increased although the speedup with increasing number of CPU cores was not linear. For example, the wall clock time for assessing climate suitability index at 1 km spatial resolution reduced by 90% with 16 CPU cores. However, it took about 1.5 time to compute climate suitability index compared with a theoretical time for the given number of CPU. Implementation of climate suitability assessment system based on the MPI (Message Passing Interface) would allow support for the digital climate map at ultra-high spatial resolution, e.g., 30m, which would help site-specific design of cropping system for climate change adaptation.

키워드

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