Introduction
Rice is the most important cereal in the developing world and is a staple food consumed by a large part of world human population [10]. Rice flour is one of the most valuable cereal flours from a nutritional viewpoint due to its hypoallergenic proteins and low calcium content, moreover the absence of gluten [12]. Rice flour is used in many food products and improving rice quality is of great relevance to many Asian countries. However, dough made from rice lacks extensibility and elasticity, whereas that of wheat is suitable for many food products including breads and noodles. Wheat flour is different from other cereal flours, including rice, because it contains gluten that gives it the elasticity and extensity required for bread-making [5].
Gluten consists mainly of two types of seed storage proteins, the glutenins and the gliadins. Glutenins are classified into high-molecular-weight glutenin subunits (HMW-GS) and low-molecular-weight glutenin subunits (LMW-GS). Although the HMW-GS contribute only about 5% of the total protein in mature wheat kernels [28], the elasticity of wheat dough depends mainly on the HMW-GS, so their networking is important determinants of bread-making quality [23].
The HMW-GS are encoded by the Glu-A1, Glu-B1 and Glu-D1 genes on the long arm of chromosomes 1A, 1B and 1D, respectively [13]. Each locus includes two genes linked together encoding two different types of HMW-GS, x- and y-type subunits [24]. Several HMW-GS genes have been shown to be functional when transformed into Escherichia coli [11], tobacco [25], wheat [2, 3, 5, 6] and tritordeum [26].
Development of transgenic plants increasing bread-making quality using various HMW-GS genes is good way to solve lacks of rice extensibility and elasticity. Araki’s [4] group has developed transgenic rice using transformationcompetent artificial chromosome (TAC) clones harboring a HMW-GS and LMW-GS genes from wheat genomic DNA. All transgenic lines had HMW-GS subunit proteins in the rice endosperm, and the expressed proteins are processed at the same site as the mature protein in wheat seeds.
The persistence of selectable marker genes in transgenic crops destined for field cultivation and human food leads to serious public concerns about the safety of transgenic crops, even though several risk-assessment reports [17, 27] have shown that neither the genes nor their products are harmful to human or environmental health. Moreover, generating marker-free transgenic plants responds not only to public concerns over the safety of genetically engineered crops, but supports multiple transformation cycles for transgene pyramiding. Repeated use of the same promoter and a polyadenylation signal for different selectable marker genes could result in transcriptional gene silencing [15]. Therefore, eliminating selectable marker genes is crucial for stacking multiple traits in a transgenic plant.
As one of major Gluten proteins, the HMW-GS Ax1 has been reported that there is associated with processing properties. Although co-expression of TaGlu-Ax1 and PINA in durum wheat have combined effects on dough mixing behaviors with a better dough strength and resistance to extension than those from lines expressing TaGlu-Ax1 or Pina [19], the expression of TaGlu-Ax1 is no doubt to influence the processing properties. Overexpression of HMW-GS Ax1 in several durum wheat cultivars resulted in increased dough strength [13].
In this study, we generated marker-free transgenic rice expressing the wheat HMW-GS protein without any herbicide or antibiotic resistance marker genes using the co-transformation method. The marker-free transgenic plant expressing TaGlu-Ax1 gene is critical material for generating transgenic plant advanced quality processing of bread and noodle without antibiotic markers. Moreover, the marker-free transgenic rice developed in this study should provide useful for improving processing quality in rice breeding program.
Materials and Methods
Cloning of the wheat TaGlu-Ax1 glutenin gene
‘Jokyeong’ (Triticum aestivum L. cv. Jokyeong) was used for cloning the TaGlu-Ax1 gluenin gene. The TaGlu-Ax1 gene was amplified by polymerase chain reaction (PCR) of genomic DNA using the primers TaGlu-Ax1-CF (primer sequences: 5′-TCATCACCCACAACACCGAGCA-3’) and TaGluAx1-CR (primer sequences: 5′- AGCTGCAGAGAGTTCTAT CACTG-3′), which were designed from a sequence on Gen-Bank (accession no. X61009). The PCR temperature cycling conditions were 4 min at 94℃, followed by 35 cycles of 94℃ for 30 sec, 60℃ for 30 sec, 72℃ for 2 min, and a final extension at 72℃ for 10 min. The amplification products were separated on a 1% agarose gel and visualized with EtBr. The amplified products were sub-cloned using a TOPO TA Cloning kit for sequencing (Invitrogen, Carlsbad, CA, USA).
DNA constructs
To make a marker-free vector, we first inserted TaGlu-Bx7-own promoter from wheat cultivar ‘Jokyeong’ into the pBTEX binary vector, which modified from pCAMBIA1300 binary vector. The HPTII expression cassette (CaMV 35S promoter-HPTII gene-CaMV 35S terminator) in the pBTEX binary vector was removed by XhoI and EcoRI restriction enzyme treatment. After klenow enzyme treatment for blunt ligation, the vector was self-ligated. Then, amplified the TaGlu-Ax1 gene with the EcoRI and KpnI restriction enzyme sites was constructed into pBTEX binary vectors under the control of TaGlu-Bx7-own promoter (Fig. 1A). The positive selectable marker cassette for co-transformation was used by an empty pBTEX binary vector (Fig. 1B).
Fig. 1.Vector constructs expressing the TaGlu-Ax1 (upper panel) and hygromycin phosphotransferase II (HPTII) (lower panel) genes in the binary vectors. HMW pro, TaGlu-Bx7-own promoter; OCS-ter, octopine synthase terminator; CaMV 35S, cauliflower mosaic virus promoter; 35S-ter, 35S terminator; RB, right border; LB, left border.
Agrobacterium handling
Competent Agrobacterium tumefaciens EHA105 was transformed with TaGlu-Ax1- cloned binary vector and an empty vector containing HPTII for the selectable marker using the freeze-thaw method [7]. T0 plants were selected on YEP media containing kanamycin (50 mg/l). Transformation was confirmed by PCR amplification of plasmids mini-prepped from each Agrobacterium strain [3].
Rice co-transformation
Mature seeds of Oryza sativa L. subsp. japonica var. Dongjin were used to induce callus formation on callus induction (CI) medium [N6 salts [9] with vitamins, 2.5 g/l proline, 2 mg/l 2,4-D, 0.5 g/l casamino acid, 30 g/l sucrose and 2 g/l gelrite, pH 5.7]. After 21 days of incubation in the dark at 25℃, the scutellum-derived calli were excised and preincubated on CI medium for 1 week. Agrobacterial cells were grown on YEP solid medium containing antibiotics at 25℃ for 2 days. And then, agrobacterial cells were resuspended in suspension medium (N6 salts with vitamins, 2 mg/l 2,4-D, 0.5 g/l casamino acid, 30 g/l sucrose, and 10 g/l glucose, pH 5.7) with 200 μM acetosyringone as a final concentration. After two Agrobacterium cells were mixed in a 3:1 ratio of EHA105 with TaGlu-Ax1 gene expressing cassette and EHA105 with HPTII gene expressing cassette, the calli were transformed by swirling in the mixture of Agrobacterium cultures for 30 min. The calli were blotted on Whatman no. 1 paper and cocultivated on the cocultivation medium (N6 salts with vitamins, 2 mg/l 2,4-D, 0.5 g/l casamino acid, 30 g/l sucrose, 10 g/l glucose, and 2 g/l gelrite, pH 5.2 with 200 μM acetosyringone as a final concentration). After 3 days, the calli were washed with liquid CI medium supplemented with 250 mg/l cefotaxime and 150 mg/l and placed on the selection medium (CI medium supplemented with 50 mg/l hygromycin, 250 mg/l cefotaxime). After selection and regeneration, the regenerated plantlets were acclimatized and grown in a greenhouse.
PCR analysis of T0 plants
PCR was performed with the GeneAmp System 9700 (Applied Biosystems, Foster City, CA, USA) with a gene-specific primer set (TaGlu-Ax1; forward 5′- TCATCACCCACAACACCGAGCA -3′, reverse 5′- GACCTTGTCCTGGTTGCTGTCTTTG -3′, HPTII; forward 5′-CGCTTCTGCGGGCGATTT-3′, reverse 5′-CCCATTCGGACCGCAAGGA -3′) and EF Taq DNA polymerase (Solgent Co. Seoul, South Korea). Each reaction mixture (30 μM) consisted of 10 mM Tris-HCl (pH 9.0), 1.5 mM MgCl2, 40 mM KCl, 250 μM dNTPs, and 1 U Taq DNA polymerase. Amplified products were separated on a 1% agarose gel, stained with EtBr, and visualized with a UV illuminator.
Southern hybridization analysis
Rice genomic DNA was prepared by the CTAB extraction method [31]. Aliquots of 5 μg of purified DNA were digested with restriction endonuclease (EcoRI), size-fractionated on a 0.8% agarose gel, and the DNA was transferred to a nylon membrane through capillary blotting in 10× SSC (Gene Screen, DuPont, Wilmington, DE, USA). The blots were labeled using AlkPhos Direct (Amersham, GE Healthcare. Piscataway, NJ, USA) according to the manufacturer’s instructions. After hybridization, the filters were washed for 30 min at 55℃ to remove unlabelled probe. Subsequently, CD-star Detection Reagent (Amersham, GE Healthcare. Piscataway, NJ, USA) was used to detect and generate signals.
RNA extraction and RT-PCR analysis
T1 generation seeds were frozen in liquid nitrogen and then ground to powder using a mortar and pestle. Total RNA was extracted using a method reported previously [34]. The isolated RNA preparations were then reverse-transcribed with oligo-dT primer and a First Strand cDNA Synthesis kit for RT-PCR (Roche Co., Basel, Switzerland) with gene-specific primers. The primers were as follows: TaGlu-Ax1 forward 5′- TCATCACCCACAACACCGAGCA -3′, TaGlu-Ax1 reverse 5′- GACCTTGTCCTGGTTGCTGTCTTTG -3′; OsActin primers were used as internal standards for mRNA expression profiling [21, 33]. The PCR conditions consisted of initial denaturation at 94℃ for 4 min, followed by 30 cycles at 94℃ for 1 min, 60℃ for 1 min, 72℃ for 2 min, and a final extension at 72℃ for 10 min. The experiments were repeated three times and all produced similar results. The OsActin control primers were 5′- GGA ACT GGT ATG GTC AAG GC -3′ and 5′- AGT CTC ATG GAT ACC CGC AG -3′ [8].
Protein extraction and Western blot
T1 generation seeds were frozen in liquid nitrogen and then ground to powder using a mortar and pestle. Total storage proteins in the rice endosperm were extracted with 50 mM Tris-HCl (pH 8.0) containing 2% SDS, 50% of 1-propanol and 1% of dithiothreitol, as described [4]. Amount of extracted total proteins was measured by Nanodrop Spectrophotometer (ND-1000, Thermo Fischer Scientific, Wilmington DE, USA). Western blot analysis was performed as described [22].
Simplified analysis of bread-making quality
The bread-making procedure used the straight dough method with 100 g of wheat and rice flours (Goami, Dongjin and TaGlu-Ax1 transgenic rice), 6 g of sugar, 1.5 g of salt, 3 g of dry milk, 6 g of butter, 3 g of yeast and 60 g of fresh water at 30℃, 90% moisture conditions for 60 min first fermentation. After punching, second fermentation and baking were carried out at 30℃ for 40 min, and 210℃ for 25 min, respectively. Height of baked doughs were measured from bottom to top after baking.
Results
Vector construction and Agrobacterium transformation for marker-free transgenic rice
To improve dough properties of rice flour, we cloned high-molecule weight glutenin subunit gene (TaGlu-Ax1) from genomic DNA of Triticum aestivum cv. Jokyeong by PCR analysis with specific primers. We tried to generate marker-free transgenic plant expressing only TaGlu-Ax1 gene on rice through Agrobacterium-mediated co- transformation system. To make a marker-free vector, we first removed the HPTII expression cassette (CaMV 35S promoter-HPTII gene- CaMV 35S terminator) by treatment of XhoI and EcoRI restriction enzymes and inserted wheat Glu-Bx7-own promoter. And then TaGlu-Ax1 gene was constructed under the control of Glu-Bx7-own promoter into pBTEX vector, which was modified pCAMBIA1300 binary vector (Fig. 1, upper panel). And original pCAMBIA1300 binary vector harboring HPTII gene was used to select hygromycin resistant T0 plants (Fig. 1, lower panel). The two expression binary vectors were separately introduced into A. tumefaciens EHA105 strain for plant transformation. Each binary vector was rescued from the EHA105 strain harboring TaGlu-Ax1 and the HPTII, and the HPTII and TaGlu-Ax1 genes were validated by PCR analysis.
Generation of marker-free TaGlu-Ax1 transgenic rice plants
Each EHA105 strain harboring TaGlu-Ax1 expression vector or HPTII expression vector was cultured in YEP medium for plant transformation. The cultured cells were resuspended to OD600 = 0.1 in AAM medium [14], and each TaGlu-Ax1 and HPTII cell was added at a 3 : 1 ratio. These mixed cells were co-infected into rice calli. The transformed calli were selected with hygromycin because we co-infected calli with the HPTII gene. We obtained 210 independent hygromycin-resistant T0 plants through co-infection in the Agrobacterium transformation system.
Genomic DNA from 210 independent T0 plants was extracted and insertion of HPTII and TaGlu-Ax1 genes was analyzed using PCR analysis with gene specific primers. As shown in Fig. 2, HPTII gene in all of T0 plants was amplified, but no PCR products of Dongjin used as negative controls were detected. Next, we investigated the insertion of TaGlu-Ax1 gene into rice genome within T0 plants by PCR analysis. Among 210 independent transgenic lines, TaGlu-Ax1 gene in 20 T0 plants was amplified PCR product which is same PCR product size of plasmid used as positive controls (Fig. 2). This result means that 20 transgenic lines harbored both TaGlu-Ax1 and HPTII genes. And the frequency co-transformation was about 9.52% in our experimental system (Table 1). We performed Southern blot analysis with the TaGlu-Bx7-own promoter as probes to validate their insertion and guessed segregation ratio of the marker-free plant in T1 plants. One or multi signal bands in 20 selected T0 plants lines were detected (Fig. 3).
Fig. 2.Identification of T0 plants by gene specific primer sets. TaGlu-Ax1 (upper panel) and HPTII (lower panel) genes were amplified using TaGlu-Ax1 and HPTII specific primer sets, respectively. SM, molecular marker; Dongjin (Korean rice cultivar), non-transgenic plant; Plasmid, vector construct containing TaGlu-Ax1 and HPTII genes; 1-20, co-transformant transgenic lines, Lane No.; lane number. Only 5 transformants of 210 transfomants were shown in figure. PCR reactions were performed after randomly chosen 20 T0 plants of 210 transformants (upper panel). Genomic DNAs from each plant were used as the template for TaGlu-Ax1 and HPTII specific amplification. The reaction products of the sample plant were analyzed by electrophoresis on a 1.0% agarose gel.
Table 1.Co-transformation efficiency calculated during regeneration in rice-transformation experiments
Fig. 3.Southern hybridization analysis of TaGlu-Ax1 gene from T0 plants. The 1.35 kb fragment of TaGlu-Bx7-own promoter was amplified by PCR using specific primer sets as the probe.
Transcript and protein analysis of TaGlu-Ax1 gene in the co-transformed rice plants
Because TaGlu-Ax1 expression in rice endosperm is important for rice flour quality and we used TaGlu-Bx7-own promoter to express TaGlu-Ax1, total RNA from one copy-inserted T1 generation transgenic seeds was extracted, and TaGlu-Ax1 gene transcript level was examined by semiquantitative RT-PCR after randomly chosen five T1 seeds in line 6 of transformants. The TaGlu-Ax1 transcripts were successively expressed in the T1 generation transgenic seeds, whereas TaGlu-Ax1 expression in Dongjin was not detected (Fig. 4). OsActin expression was used as a quantitative control. And we analyzed the protein expression of TaGlu-Ax1 by Western blot with an anti x-type HMW specific antibody. The seven transgenic plants (1, 2, 5, 9, 16, 18 and 20) which were shown abnormal morphologies comparing with Dongjin were removed. After total protein extraction from wheat (‘Jokyeong’ cultivar), Dongjin and transgenic plants (line 6 in fig. 3), 0.5 μg of wheat and 40 μg of total protein extract of transgenic plants were used for SDS-PAGE. The immunospecificity of the anti-x-type HMW specific antibody was verified by in vivo experiment. Although the protein bands were well detected in transgenic plants, however, the level of protein expression did not depend on their inserted copy number (Fig. 5). Multi- copies of TaGlu-Ax1 gene were inserted into genome in some transgenic plants (16, and 20), no or weak bands were detected. We suppose that this phenomenon is homology-dependent gene silencing in plants [2].
Fig. 4.Transcript analysis of the TaGlu-Ax1 gene from T1 seeds. RT-PCR was performed with TaGlu-Ax1 T1 seed transcripts to measure TaGlu-Ax1 mRNA expression. Gene-specific PCR primers (forward and reverse primers) were designed to amplify the TaGlu-Ax1 gene. OsActin was used as a control. RT-PCR reactions were performed after randomly chosen 5 T1 seeds in line 6. The reaction products of the sample plant were analyzed by electrophoresis in a 1.0% agarose gel. Lane No.; lane number.
Fig. 5.Protein expression analysis of TaGlu-Ax1 gene from T1 seeds. Western blotting was performed with an anti x-type HMW specific antibody. Total protein extracts of 0.5 μg of wheat and 40 μg of transgenic plants and ‘Dongjin’ were used for SDS-PAGE. The numbers were indicated tansformants lines.
Selection of marker-free plants harboring TaGlu-Ax1 gene in the T1 generation
To select TaGlu-Ax1 marker-free plants harboring only the TaGlu-Ax1 gene, 100 T1 generation seeds of the transgenic plant 6 were planted in soil and genomic DNA was extracted from leaves of plantlets after 4 weeks. Insertion of the TaGlu-Ax1 and HPTII genes was investigated by PCR analysis. As shown in Fig. 6, most of the transgenic lines harbored both the TaGlu-Ax1 and HPTII genes, and some inserted only the HPTII gene. However, transgenic 3, 4, 8 and 18 lines contained only the TaGlu-Ax1 gene (Fig. 6). This result shows that marker-free plants containing only the TaGlu-Ax1 gene were successfully screened at the T1 generation. Finally, we produced marker-free transgenic rice plants harboring TaGlu-Ax1 gene for advanced quality processing of bread and noodle.
Fig. 6.PCR analysis of T1 progenies to select marker-free transgenic plant containing TaGlu-Ax1 gene. Dongjin, non-transgenic plant as negative control; 1-23, T1 progeny lines from T0 plants containing both TaGlu-Ax1 and HPTII genes, Lane No.; lane number. PCR reactions were performed after randomly chosen 23 T1 plants in line 6. The reaction products of the sample plant were analyzed by electrophoresis in a 1.0% agarose gel.
Analysis of bread-making quality in marker-free transgenic rice
In this study, we developed marker-free TaGlu-Ax1 transgenic rice. The final objective of this study is to develop transgenic rice of increased processing quality than nontransgenic rice. Therefore, we first measured swollen ratio of dough in TaGlu-Ax1 transgenic rice (line 6), with Jokyeong (Korea wheat variety), Dongjin and Goami (Korea rice variety) which used for material of rice noodle after first fermentation. As a result, the marker-free TaGlu-Ax1 transgenic rice was slightly higher than Goami on swollen ratio of dough, whereas the Dongjin showed same level with the marker-free TaGlu-Ax1 transgenic rice (Fig. 7). This results indicated that only one HMW-GS (TaGlu-Ax1) insufficient for increasing processing quality (especially bread-making quality) of transgenic rice dough. Finally, we think that accumulation and combination of more HMW-GSs and LMW-GSs and gliadins of wheat is required for improved processing quality of rice dough.
Fig. 7.Analysis of bread-making quality of Jokeong (Korea wheat variety), Goami (Korea rice variety), Dongjin (non-transgenic rice) and marker-free transgenic rice (T2 seeds in line 6). Heights of swollen doughs of Jokyeong and rice flours were measured after baking procedure.
Discussion
Wheat gluten proteins are classified into two broad groups based on their aggregation and functional properties, including the glutenins, which form polymers stabilized by inter-chain disulfide bonds, and gliadins, which are present as monomers and interact by non-covalent forces [29]. In particular, HMW-GSs are minor components in terms of quantity, but they are key factors during bread making because they are major determinants of gluten elasticity [30] by promoting the formation of larger glutenin polymers.
In this study, we cloned TaGlu-Ax1, which is one of HMW-GS genes, and validated the insertion of the TaGlu-Ax1 gene in T0 plants through PCR analysis with gene specific primers and Southern blot analysis (Fig. 2, Fig. 3). The TaGlu- Bx7-own promoter was introduced for seed specific expression of TaGlu-Ax1 gene.
The transcript and protein of TaGlu-Ax1 in the transgenic plants were stably expressed in T1 generation rice seeds (Fig. 4). This result suggests that the protein processing system was conserved between rice and wheat. However, the level of protein expression did not depend on their inserted copy number (Fig. 5). Genetic engineering of plants sometimes results in transgene silencing after integration into the genome, which may relate to a defense mechanism against foreign DNA expression [18, 32]. This phenomenon may be related to homology-dependent gene silencing in plants. Homology-dependent gene silencing has attracted considerable interest because it may be detrimental to genetic engineering and also because of its usefulness as a tool to study the mechanisms involved in detecting and inactivating exogenous DNA [18, 20].
Multi- copies of TaGlu-Ax1 gene were inserted into genome in some transgenic plants (5, 9, 19 and 20), no proteins were detected. We suppose that this phenomenon is homology-dependent gene silencing in plants [2].
The co-transformation frequency in our experimental conditions was 9.52% (Table 1). In a previous report, co-transformation frequency in rice was about from 2% to 14% [16]. This result indicates that transformation efficiency is dependent on rice cultivar and the experimental conditions. Although the generating of marker-free plants based on the Agrobacterium-mediated co-transformation using two different expression cassettes was need more time consuming and effort, this method could be efficiently produced marker-free transgenic rice plants. In addition, expression of only the TaGlu-Ax1 gene in rice was no better the processing quality (Fig. 7). However, co-expression of TaGlu-Ax1 and PINA in durum wheat is increased dough strength and resistance to extension than lines expressing TaGlu-Ax1 or Pina [19]. Accumulation and combination of more HMW-GSs and LMW-GSs, gliadins and other genes of wheat is required for improved processing quality of rice dough.
As a result, the marker-free TaGlu-Ax1 transgenic rice developed in this study is valuable to be utilized in breeding programs as a good material for improved processing quality.
Finally, we obtained marker-free transgenic plants containing only TaGlu-Ax1 gene from each of the T1 plants (Fig. 6). This marker-free transgenic plant harboring TaGlu-Ax1 will become useful material to optimize transgenic rice plants, which has advanced quality processing of bread and noodle by crossing with genetically engineered rice plants with other gluten genes. In other words, our results should be seen as a process for improving the processing quality.
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