DOI QR코드

DOI QR Code

Genetic Distances of Three Mollusk Species Investigated by PCR Analysis

  • Oh, Hyun (Department of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University) ;
  • Yoon, Jong-Man (Department of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University)
  • 투고 : 2014.01.06
  • 심사 : 2014.02.07
  • 발행 : 2014.03.31

초록

Three species of Nortamea concinua (NC) and Haliotis discus hannai (HDH) from Tongyeong and Sulculus diversicolor supertexta (SDS) are widely distributed on the coast of the Yellow Sea, southern sea and Jeju Island in the Korean Peninsula under the innate ecosystem. There is a need to understand the genetic traits and composition of three mollusk species in order to evaluate exactly the patent genetic effect. PCR analysis was performed on DNA samples extracted from a total of 21 individuals using seven decamer oligonucleotides primers. Seven primers were shown to generate the unique shared loci to each species and shared loci by the three species which could be clearly scored. A hierarchical clustering tree was constructed using similarity matrices to generate a dendrogram, which was facilitated by the Systat version 10. 236 specific loci, with an average of 56.3 per primer, were identified in the NC species. 142 specific loci, with an average of 44.7 per primer, were identified in the HDH species. Especially, 126 numbers of shared loci by the three species, with an average of 18 per primer, were observed among the three species. Especially, the decamer primer BION-75 generated 7 unique loci to each species, which were identifying each species, in 700 bp NC species. Interestingly, the primer BION-50detected 42 shared loci by the three species, major and/or minor fragments of sizes 100 bp and 150 bp, respectively, which were identical in all samples. As regards average bandsharing value (BS) results, individuals from HDH species (0.772) exhibited higher bandsharing values than did individuals from NC species (0.655). In this study, the dendrogram obtained by the seven decamer primers indicates three genetic clusters: cluster 1 (CONCINNA 01~CONCINNA 07), cluster 2 (HANNAI 08~HANNAI 14), cluster 3 (SUPERTEXTA 15~SUPERTEXTA 21). Comparatively, individuals of HDH species were fairly closely related to that of SDS species, as shown in the hierarchical dendrogram of genetic distances.

키워드

참고문헌

  1. Chenyambuga SW, Hanotte O, Hirbo J, Watts PC, Kemp SJ, Kifaro GC, Gwakisa PS, Petersen PH, Rege JEO (2004) Genetic characterization of indigenous goats of sub-Saharan Africa using microsatellite DNA markers. Asian-Aust J Anim Sci 17:445-452. https://doi.org/10.5713/ajas.2004.445
  2. Choe BL, Kim HS (1988) On the classification and distribution of archeogastropods from Korea waters. Korean J System Zool Special Issue 2:135-198.
  3. Huang BX, Peakall R, Hanna PJ (2000) Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers. Mar Biol 136:207-216. https://doi.org/10.1007/s002270050678
  4. Jeffreys AJ, Morton DB (1987) DNA fingerprints of dogs and cats. Anim Genet 18:1-15.
  5. Kafuku T, Ikenoue H (1983) Modern Methods of Aquaculture in Japan. Elsevier Scientific Publishing Company, pp. 172-182.
  6. Kim JW, Chung SC (1985) On the growth of abalones, Sulculus diversicolor (Reeve) and S. diversicolor aquatilis (Reeve), in Cheju Island. Abstracts Mar Environ Res Instit 9:39-50.
  7. Kim JY, Park CY, Yoon JM (2004) Genetic differences and DNA polymorphism in oyster (Crassostrea sp.) analysed by RAPD-PCR. Korean J Genet 26:123-134.
  8. Kim CH, Yun SS, Kim YK, Byeon HS (1994) Studies on morphological variation of Archaeogastropoda (Patellacea) in Korea. Bull Sci Education 10:69-81.
  9. Kim SH, Lee CH, Song YB, Kim BY, Sang YH, Lee YD (2012) Reproductive cycle of small abalone, Haliotis diversicolor aquatilis in Jeju Coastal Waters. Dev Reprod 16:145-153.
  10. Mahmoud N, Dellali M, El Bour M, Aissa P, Mahmoudi E (2010) The use of Fulvia fragilis (Mollusca: Cardiidae) in the biomonitoring of Bizerta lagoon: A multimarkers approach. Ecological Indicators 10:696-701. https://doi.org/10.1016/j.ecolind.2009.11.010
  11. McCormack GC, Powell R, Keegan B (2000) Comparative analysis of two populations of the brittle star Amphiura filiformis (Echinodermata: Ophiuroidae) with different life history strategies using RAPD markers. Mar Biotechnol 2:100-106.
  12. Min DK (2001) Korea Mollusks with Color Illustration. Min shell house, pp. 44-47.
  13. Muchmore ME, Moy GW, Swanson WJ, Vacquier VD (1998) Direct sequencing of genomic DNA for characterization of a satellite DNA in five species of Eastern Pacific abalone. Mol Mar Biol Biotechnol 7:1-6.
  14. Park SY, Park JS, Yoon JM (2005) Genetic difference and variation in slipper lobster (Ibacus ciliatus) and deep sea lobster (Puerulus sewelli) throughout its distribution range determined by RAPD-PCR analysis. Korean J Genet 27:307-317.
  15. Song YJ, Yoon JM (2013) Genetic differences of three Pollicipes mitella populations identified by PCR analysis. Dev Reprod 17:199-205. https://doi.org/10.12717/DR.2013.17.3.199
  16. Yoke-Kqueen C, Radu S (2006) Random amplified polymorphic DNA analysis of genetically modified organisms. J Biotechnol 127:161-166. https://doi.org/10.1016/j.jbiotec.2006.06.001
  17. Yoon JM, Kim YH (2003) Wide marsh clam (Corbicula spp.) populations from three sites analysed by RAPDPCR- AGE. Bull Electrochem 19:337-348.
  18. Yoon JM, Kim JY (2004) Genetic differences within and between populations of Korean catfish (S. asotus) and bullhead (P. fulvidraco) analysed by RAPD-PCR. Asian- AustJ Anim Sci 17:1053-1061. https://doi.org/10.5713/ajas.2004.1053