Introduction
Heme proteins such as myoglobin (Mb) and hemoglobin (Hb) have been widely used as model systems for the study of protein dynamics and structure and their relation to its function.1 Mb and Hb are oxygen storage and transport proteins, respectively, that contain a heme prosthetic group. These proteins reversibly bind small neutral ligands such as O2, CO, and NO when the heme is in the ferrous form. Because the binding of ligand proceeds on the picosecond or nanosecond time scale, time-resolved spectroscopy has been used to probe the binding dynamics and structural changes induced by ligand binding after photodeligation of the ligand-bound proteins.2-11 The quantum yield (QY) of photodeligation for these ligands in the ligated ferrous heme proteins by Soret or Q-band excitation in the visible region is significant,2,12 and the photodeligation occurs on a subpicosecond time scale;13,14 thus, ligated ferrous Mb (MbII) and Hb (HbII) have been ideal systems to study the ultrafast dynamics of ligand binding and conformational changes induced in the protein on ligand binding.1 Various experimental and theoretical investigations have been carried out on ferrous hemes with small neutral ligands.1-14
Neutral ligands bind ferrous hemes, whereas anionic ligands bind ferric hemes.15 Because ferric heme proteins are also known to participate in biological functions,15,16 understanding the binding characteristics of ligands to both ferric and ferrous hemes is necessary to fully unveil the functioning mechanism of heme proteins. Compared to ferrous hemes, reports on the dynamics of ligand binding to ferric hemes are scarce.16-18 According to recent studies on cyanide (CN−) bound to ferric heme proteins such as Mb, Hb, and cytochrome c, CN−-bound heme proteins were photostable and did not undergo photodeligation.16,18,19 Azide ion-bound Mb was also found to be photostable on photoexcitation.17 Anionbound heme proteins appear to be photostable, and thus the conventional method of investigation—probing ligand-binding dynamics after photodeligation of anion-bound ferric hemes—could not be utilized.
When a molecule is photoexcited, it either thermally and/ or vibrationally relaxes after electronic relaxation or undergoes a photoreaction such as deligation. Time-resolved spectra have often been used to differentiate between photophysical and photochemical processes. However, if the transient spectra of the photophysical process are not well separated in time or frequency from those for the photochemical process, the two cannot be clearly distinguished. According to recent time-resolved IR (TRIR) spectra of photoexcited CN−-bound ferric Mb (MbIIICN), a transient absorption, redshifted by 30 cm−1 from the fundamental band, appeared immediately and decayed with a time constant of 3.6 ps. The values for the red shift and decay time constant are comparable with a typical anharmonicity and vibrational relaxation time (T1) of a vibrationally excited heme ligand in the ground electronic state. Furthermore, 3.6 ps was too short to be the time constant for geminate rebinding (GR) of the ligand to the heme proteins. Therefore, the transient absorption in the TRIR spectrum was attributed to the vibrationally excited CN in MbIIICN instead of the deligated CN−, and thus photodeligation was not accounted for. More recently, Champion and coworkers performed continuous-wave resonance Raman measurements on the photoexcited MbIIICN and concluded that MbIIICN undergoes photodeligation with a QY = 0.75, and that almost all the deligated CN− geminately rebinds with a time constant of 3.6 ps.20 They suggested that although the MbIIICN was being photodeligated, the extremely fast and highly efficient (99.99%) GR precluded the observation of the photodeligated state in time-resolved spectra.20 Clearly, the characteristics of the vibrationally excited spectrum for ligands bound to heme proteins are critical to differentiate between the signals for photochemical processes from those for photophysical processes in the TRIR spectrum. Unfortunately, due to the weak extinction coefficient of the CN stretching mode, its T1 value and anharmonicity were not directly measured in MbIIICN. Other anions with reasonable extinction coefficients would be helpful in characterizing the photodynamics of anionbound heme proteins after excitation by a visible pulse. NCO− and NCS− are good ligands for studying the dynamics of photoexcited anion-bound heme proteins because their extinction coefficients are large, their anti-symmetric stretching (ν1) modes are located well away from the protein absorption, and their binding constants to heme are relatively large.
The vibrational relaxation (VR) rate and mechanism of energy transport for a molecule in solution are essential to understanding chemical reaction dynamics in condensed phases.21 T1 studies also provide important information regarding the structure and dynamics of solvated molecules.21-23 For example, the T1 of CO bound to heme proteins was measured to reveal the heme-ligand bond dynamics in CObound MbII (MbIICO) and HbII (HbIICO). The T1 values of CO in MbIICO and HbIICO were found to be shorter than that in CO-bound protoheme, where the bound CO is not surrounded by a protein matrix but is instead exposed to solvent.23 The T1 of the CO bound to the heme was considerably shorter than the T1 of metallocarbonyls (70−800 ps),23-25 which was attributed to intramolecular VR (IVR) from CO to heme owing to the strong anharmonic coupling of the ligand and ring modes in the heme.23,26,27 The VR times of NO bound to various hemes were also measured to explore its bonding dynamics in heme proteins and to properly assign its transient absorption signals in TRIR.9,28,29 In contrast, the VR time of anions bound to ferric hemes is rarely investigated.
In this report, we characterized the vibrationally excited ν1 modes of NCS and NCO anionic ligands bound to MbIII and HbIII using femtosecond IR pump-IR probe spectroscopy. Whereas T1 was shortened in MbIIINCS and HbIIINCS compared to NCS− dissolved in D2O, it was lengthened in MbIIINCO and HbIIINCO compared to NCO− dissolved in D2O. The implication of the changes in the VR times of these anions bound to heme proteins is discussed.
Experimental
Femtosecond Infrared Spectrometer. A femtosecond infrared spectrometer used here was described previously.8,29 Briefly, a home-built optical parametric amplifier, pumped by a commercial Ti:sapphire amplifier with a repetition rate of 1 kHz generating 110 fs pulses at 800 nm, was used to generate signal and idler pulses in the near IR region. The generated signal and idler pulses were mixed in an AgGaS2 crystal for difference-frequency generation of a broad band (~130 cm‒1) mid-IR pulse with energy of about 1 μJ. A small portion of the intense IR pulse was reflected off a 2 mm thick BaF2 wedged window for a probe pulse, and the transmitted beam was used as a pump pulse. The mutual polarization of the pump and probe pulses was set at the magic angle (54.7°) to obtain an isotropic absorption spectrum by rotating the polarization of the pump pulse by two IR polarizers. A chopper was used to block the pump beam at half the repetition rate to collect the pumped and unpumped absorption signals quasi-simultaneously.8,29 The spectrally broad probe pulse passed through the sample and was routed to a 320 mm monochromator with a 150 l/mm grating equipped with a N2(l)-cooled 64-element HgCdTe array detector. The spectral resolution of the probe pulse was approximately 1.54 cm‒1/pixel at 2100 cm‒1. The pumpinduced change in the absorbance of the sample, ΔA, was obtained by subtracting the unpumped absorbance from the pumped one. The instrument response function was ca. 0.3 ps.
Sample Preparation. Lyophilized horse skeleton MbIII, human HbIII, NaOCN, NaSCN were purchased from Sigma- Aldrich Co. and used without further purification. MbIII was dissolved in D2O buffered with 0.1 M potassium phosphate (pD 7.4), and the solution was centrifuged to remove any aggregates and undissolved impurities. Concentrated NCO− and NCS− solutions were also prepared in the same phosphate D2O buffer solution by dissolving the corresponding sodium salt. A small amount of anion solution was added to the filtered MbIII solution to prepare anion-bound MbIII. Because the binding constant of the anions to MbIII is finite, the final solution is a mixture of ligated MbIII, MbIII, and free anion. The initial concentrations of MbIII and anions in the mixture were 10 mM and 10–20 mM, respectively, meaning that 50–80% of the added MbIII was ligated. HbIIINCO and HbIIINCS were prepared in the same way as the MbIII adducts. Because Hb has four heme units, the heme concentration of Hb is four times that of the Hb concentration. For the sake of better comparison, the concentration of heme will be used in place of Hb concentration hereafter. As 10 mM of HbIII and 10–20 mM of anions were mixed, the final solution also became a mixture of ligated HbIII, HbIII, and free anion, and 50–80% of the HbIII was ligated. The NCO− or NCS−-bound heme proteins was loaded in a gas-tight 27 μm or 130 μm path length sample cell with two CaF2 windows, respectively. The sample cell was rotated sufficiently quickly so that each laser pulse excited a fresh volume of the sample. D2O was used to avoid strong water absorption in the spectral region of interest. Because D2O absorption is much lower near 2000 cm−1, where the Fe(III)NCS adduct absorbs, than near 2160 cm−1, where the Fe(III)NCO adduct absorbs, a longer path length was utilized for the Fe(III)NCS adduct. The integrity of the sample was checked by UV-Vis and FT-IR spectroscopy. The temperature of the entire lab was maintained at 293 ± 1 K.
Figure 1.Equilibrium absorption spectra of the ν1 mode of NCO− (pink) and NCS− (green) in D2O buffer, NCO (blue) in MbIIINCO and HbIIINCO, and NCS (red) in MbIIINCS and HbIIINCS at 293 K. The absorption band collected for mixtures of protein and anion was decomposed into the absorption bands for ligated protein and free anion. The absorbance is normalized to the peak intensity of NCO− or NCS− in D2O.
Results and Discussion
Figure 1 shows the vibrational absorption bands of the ν1 mode of NCS and NCO as ions in D2O buffer solution and as ligands in MbIIINCO, MbIIINCS, HbIIINCO, and HbIIINCS in the same buffer solution at 293 K. Due to the finite value of the binding constant, not all of the heme proteins in solution are ligated by the added anions. When 20 mM of NCO− or 10 mM of NCS− was mixed with 10 mM of heme, approximately 80% or 50% of the heme was ligated by the anion, respectively. Table 1 summarizes the experimentally determined spectral parameters for the ν1 mode of NCO and NCS as free anions or ligated to MbIII and HbIII dissolved in D2O buffer at 293 K, as well as the binding constants of the anions to the heme proteins. The T1 values determined in this work are also shown in Table 1. The vibrational bands of the MbIIINCS and HbIIINCS solutions show two absorption features with one feature mimicking the absorption band of free NCS− in solution. The absorption bands for MbIIINCS and HbIIINCS were obtained by carefully removing that of the free NCS− in solution. As can be seen in Figure 1, the vibrational bands for MbIIINCS and HbIIINCS show two peaks, suggesting that there are two conformations in MbIIINCS and HbIIINCS. Several vibrational bands, which were attributed to different conformations, were observed in the exogenous ligand-bound heme proteins.2 The two vibrational bands were described by two Gaussian functions. The major band (85%) of MbIIINCS was centered at 2005 cm−1 with a full width at half maximum (FWHM) of 20 cm−1, and the minor band (15%) appeared at 2037 cm−1 with a FWHM of 33 cm−1. From the separated absorption intensity, the binding constants of NCS− to the heme proteins were calculated: KMbNCS = 126 and KHbNCS = 160 at 293 K. The calculated binding constants are consistent with the reported values.30 The relative intensities of the conformation bands of MbIICO have been used to account for the populations of the corresponding conformations, which implies that the conformational bands have the same absorptivity.2 Based on the assumption that the absorptivities of the two bands in MbIIINCS and HbIIINCS are the same, the integrated extinction coefficients of the ν1 band of NCS in MbIIINCS and HbIIINCS were calculated to be 47 ± 3 and 37 ± 3 mM−1·cm−1, respectively, almost twice that of free NCS− in D2O (21 ± 2 mM−1·cm−1). In the case of MbIIINCO and HbIIINCO in solution, the absorption bands have only one feature that is very similar to the absorption band of NCO− in D2O, indicating that the ν1 bands of NCO in MbIIINCO and HbIIINCO are almost the same as that of free NCO− in D2O buffer. The absorption bands of MbIIINCO and HbIIINCO in solution were obtained by carefully removing the absorption band of free NCO− in D2O, the contribution of which was calculated with the estimated binding constants for the samples: KMbNCO = 460 and KHbNCO = 450 at 273 K. The binding constants were estimated from the temperature dependence of the reported binding constants.31 From the separated absorption intensities and the concentrations calculated from the binding constants, the integrated extinction coefficients of the ν1 bands of NCO in MbIIINCO and HbIIINCO were calculated to be 56 ± 3 and 49 ± 3 mM−1·cm−1, respectively, approximately 1.3 times that of free NCO− in D2O (39 ± 2 mM−1·cm−1). When ± 20% of the binding constant was used for the separation of the absorption band, the recovered absorption bands for MbIIINCO and HbIIINCO were within the uncertainty reported here.
Table 1.aThe ν1 mode of NCS in this compound has two absorption bands. The percent in the parentheses of the central frequency is the relative magnitude of the two bands. bThese values are taken from a previous report.21 Experimental values without error range are estimated to have 2–5% uncertainty.
Figure 2.(a) Representative transient vibrational spectra of the ν1 mode of NCS in MbIIINCS in D2O at 293 K after excitation by an intense IR pulse tuned to the fundamental band of the ν1 mode. The negative feature (inverted fundamental band) arises from the population loss in the v = 0 state of the ν1 mode due to photoexcitation, and the transient absorption (hot band) from the population gain in the v = 1 state. The hot band is red-shifted from the fundamental band by 24 cm−1, the anharmonicity of the ν1 mode of NCS in MbIIINCS. (b) Normalized time-dependent integrated areas of ΔA in the ν1 mode of NCS in MbIIINCS (red open circles) and HbIIINCS (green open triangles). The changes are well described by an exponential function with time constants of 7.2 (red line) and 6.6 ps (green line). The time constants represent the T1 values of the ν1 mode of NCS in the corresponding compounds.
Although 20–50% of the heme in the protein solution is not ligated by the added anion, the presence of the free protein does not affect the T1 measurements of the ν1 mode of the triatomic ligands because the IR pulse selectively excites the ligated protein as free protein does not absorb the IR pulse tuned to the absorption band of the ligand. In addition, the presence of the free anion in the solution can be delineated if the absorption band of the free anion is distinguished from that of bound anion. For the thiocyanate ion bound to the heme proteins, the ν1 band of the anion bound to the heme proteins is red-shifted by 20–60 cm‒1, and the vibrational band of the bound anion is well separated from that of the free anion. Therefore, the ν1 bands in MbIIINCS and HbIIINCS were selectively excited. Figure 2(a) shows the TRIR spectra of the ν1 band of NCS in MbIIINCS after excitation with an intense IR pulse. The bleach signal, mimicking the inverted equilibrium ν1 band of NCS in MbIIINCS, arises from the loss in the population of the ground vibrational state due to the excitation by an intense IR pulse tuned to the ν1 mode. The transient absorption, red-shifted from the fundamental band by 24 cm−1 (the anharmonicity of the ν1 band of NCS), arises from the gain in the population of the ν = 1 state. The integrated areas of both bleach and absorption in the MbIIINCS decay with the same time constant of 7.2 ± 0.2 ps (Figure 2(b)). Almost the same spectral behavior was observed in the TRIR spectra of HbIIINCS, except a slightly faster decay of the transients with T1 = 6.6 ± 0.2 ps. The T1 values for MbIIINCS and HbIIINCS are much smaller than that of free NCS− in D2O (18. 3 ps).21
Figure 3.(a) Representative transient vibrational spectra of the ν1 mode of NCO− in D2O buffer (upper panel) and NCO in MbIIINCO (lower panel). The data (open circles) were described by the timedependent inverted fundamental band plus the hot band (solid line). The pump-probe time delays are 0.3, 0.6, 1.0, 1.8, 3.2, and 7.5 ps and are color-coded.
The ν1 band of free NCO− heavily overlaps with those of MbIIINCO and HbIIINCO. Therefore, the vibrationally excited spectra of MbIIINCO solution contain contributions from both the ν1 bands of MbIIINCO and free NCO−. The TRIR spectra of free NCO− and MbIIINCO in solution are shown in Figure 3. The transient spectra of free NCO− show an instantaneous bleach of the fundamental band and an absorption band red-shifted by 19 cm−1 from the fundamental band (the anharmonicity of the ν1 band of NCO−). The integrated areas of both the bleach and the absorption of the transient decay with a time constant of 1.9 ± 0.2 ps, much shorter than the T1 of 2.8 ps for NCO− dissolved in methanol.21 The TRIR spectra of MbIIINCO in solution in the ν1 band region are slightly different from those of free NCO−. Because MbIIINCO in solution is a mixture containing free heme and anion, the ν1 bands of NCO in both MbIIINCO and free NCO− contribute to the transient of MbIIINCO in solution. The transient spectra were separated for each contribution (Figure 4). The transient spectra were fitted, including the known contribution from the vibrationally excited free NCO− at each delay time, and the decay of the ν1 band of NCO in MbIIINCO was recovered. As shown in Figure 4, the free NCO− contributes approximately 50% of the transient spectra at a pump-probe delay of 0.4 ps, and its contribution becomes smaller as the delay time increases, implying that the ν1 mode of NCO in MbIIINCO decays more slowly. The integrated area of the ν1 band of NCO in MbIIINCO decayed with a time constant of 2.6 ± 0.2 ps (Figure 5). When the contribution of the free anion was varied by ± 20% of the calculated value in fitting the transients, the recovered decay time was within the uncertainty given here. The T1 value of the ν1 band of NCO in HbIIINCO, which was obtained in the same way as that in MbIIINCO, was found to be 2.4 ± 0.2 ps (Figure 5).
In typical T1 measurement experiments, the time-dependent absorption change at the peak of the bleach or absorption is probed.23,32-36 When the absorption band to be probed is distinctly separate from the other absorption that can be influenced by the IR pump pulse, the decay kinetics at the peak absorption or bleach can be a good representation of the T1 of the corresponding vibrational mode. The time constants for the decays of the peak absorptions in the transients of MbIIINCS and HbIIINCS were almost the same as their T1 values. Because the absorptions of MbIIINCO and HbIIINCO heavily overlap with that of the free anion, the decays at the peak absorptions cannot be used to determine their T1 values. Figure 6 compares the decay kinetics of the peak absorption and bleach in the TRIR spectra of MbIIINCO solution with the decay with T1 value obtained in our analysis. The time constants vary depending heavily on the peak position probed. The discrepancy depends on the degree to which the absorption of the free anion contributes to the overall absorption. Clearly, probing whole TRIR spectra and their careful analysis is necessary to accurately determine the T1 of a band that is heavily overlapped with another species, as it cannot be measured by probing the kinetics at a single wavelength.
Figure 4.Transient vibrational spectra of MbIIINCO at pumpprobe delays of 0.4 (upper panel) and 3.2 ps (lower panel). The transient spectra were decomposed into the ν1 bands of NCO− in D2O buffer (pink line) and NCO in MbIIINCO (blue line). The sum of the two components (black line) describes the data well (open circles). The transient signal in the lower panel is 3 × magnified for a better view.
Figure 5.Normalized time-dependent integrated areas of ΔA in the ν1 mode of NCO− in D2O buffer (pink open squares) and NCO in MbIIINCO (blue open circles) and HbIIINCO (green open triangles). The changes are well described by an exponential function with time constants of 1.9 (pink line), 2.6 (blue line), and 2.4 ps (green line). The time constants represent the T1 values of the ν1 mode of NCO in the corresponding compounds.
Figure 6.Normalized change of the peak absorption at 2140 cm−1 (pink open circles) and peak bleach at 2160 cm−1 (green open circles) in the TRIR spectra of the ν1 mode of NCO in MbIIINCO. For comparison, the decay with a time constant of 2.6 ps, the T1 of the ν1 band, is also shown (blue line). The peak amplitudes decayed with time constants of 1.8 (pink dashed line) and 2.7 ps (green dashed line).
The ν1 mode of NCS− is localized as a CN stretching motion.34 Tominaga and coworkers investigated the T1 values of the ν1 mode of NCS− in various polar solvents and found that T1 was more than twice as long in aprotic solvents.35 Similar behavior was also observed in the CN stretching mode of cyanide-bound metal complexes.36 The faster VR in protic solvents was attributed to hydrogen bonding between the anion and solvent.36 It was suggested that VR to the solvent vibrational modes, called external VR (EVR), contributes more than VR to the other vibrational modes of the anion (IVR), in the energy dissipation of the excited ν1 mode of NCS in solvated NCS−.35 The strong hydrogen bonding plays an important role in the EVR process. The T1 values of the ν1 mode of NCS in MbIIINCS and HbIIINCS are ca. 3 times smaller than that of free NCS− in D2O, where stronger hydrogen bonding between the anion and the solvent exists. The faster VR in the ligand bound to heme indicates that IVR in MbIIINCS and HbIIINCS is more efficient. Because heme has many vibrational modes that can anharmonically couple to the ν1 mode of NCS, the faster VR in MbIIINCS and HbIIINCS can be attributed to the efficient IVR process. Evidently, VR of the ν1 mode of NCS in MbIIINCS and HbIIINCS is dominated by IVR to the heme vibrational modes.
VR of the ν1 mode of NCO− in D2O is > 10 times more efficient than that of NCS− in D2O. The slower VR of NCS− was attributed to its more localized normal coordinate and different charge distribution.21 As mentioned, D2O has a 2.4 times stronger absorption at 2160 cm−1, where the ν1 mode of NCO− absorbs, than at 2060 cm−1, where the ν1 mode of NCS− absorbs. Because the VR of a solute can be facilitated by a higher density of states in the solvent overlapping with the vibrational mode of the solute that is strongly hydrogen bonded to the solvent, the faster VR of NCO− likely arises from the efficient EVR of the ν1 mode to D2O. The slower VR of the ν1 mode in MbIIINCO and HbIIINCO implies that its EVR process is not as efficient as that of free NCO− in D2O. Since the NCO moiety is surrounded by a protein matrix, it is likely to experience weaker hydrogen bonding than free NCO− in D2O. Although the cyanate bound to heme has a slower VR than free NCO− in D2O, it still has faster VR than thiocyanate bound to heme, suggesting that the IVR process in the Fe(III)NCO adduct is more efficient than that in the Fe(III)NCS adduct. Many overtone and combination modes of heme vibrational modes were thought to be resonant with the high frequency modes of the exogenous ligand, thereby serving as a bath to accept the excess energy in the ligand.37
In addition to gaining insight on the VR of polyatomic systems, as mentioned before, VR time and anharmonicity of the vibrationally excited spectrum for ligands bound to heme proteins are very useful in isolating photophysical processes in the TRIR spectrum obtained after visible excitation. In other words, the characteristics of the vibrationally excited spectrum can be utilized in extracting photochemical processes in cyanate or thiocyanate bound to ferric heme proteins, which may be used to clarify the photostability of anion bound heme proteins.
Conclusion
We measured T1 values for the ν1 bands of NCO in MbIIINCO and HbIIINCO and NCS in MbIIINCS and HbIIINCS at 293 K. The ν1 mode of MbIIINCS or HbIIINCS in D2O has two bands near 2000 and 2040 cm‒1, red-shifted from the band of free NCS− in D2O at 2064 cm‒1. In contrast, the ν1 mode of MbIIINCO or HbIIINCO in D2O shows one band near 2160 cm−1, which is at almost the same location as the band of free NCO− in D2O, suggesting that the bonding characteristics of NCO− changed very little upon binding to the ferric heme proteins. Because the ν1 bands of NCO in MbIIINCO and HbIIINCO heavily overlap with that of free NCO− in D2O, their T1 values were obtained by carefully removing the contribution of the free NCO− to the TRIR spectra of the corresponding protein solutions. The T1 values for the ν1 bands of MbIIINCO and HbIIINCO are 2.6 ± 0.2 and 2.4 ± 0.2 ps, respectively, and are larger than that of free NCO− in D2O buffer (T1 = 1.9 ± 0.2 ps). The T1 values for the ν1 bands of MbIIINCS and HbIIINCS are 6.6 ± 0.2 and 7.2 ± 0.2 ps, respectively, and are smaller than that of free NCS− in D2O buffer (T1 = 18.3 ps). The VR of the ν1 mode of cyanate or thiocyanate bound to MbIII and HbIII appears to be dominated by IVR to the heme vibrational modes. Faster VR in the ν1 mode of NCO than NCS in the corresponding heme ligands suggests that intramolecular VR is more efficient in the NCO ligand than in the NCS ligand.
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