References
- Almiron, M., Link, A. J., Furlong, D. and Kolter, R. 1992. A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli. Genes Dev 6, 2646-2654. https://doi.org/10.1101/gad.6.12b.2646
-
Altuvia, S., Almiron, M., Huisman, G., Kolter, R. and Storz, G. 1994. The DPS promoter is activated by OxyR during growth and by IHF and
${\sigma}^s$ in stationary phase. Mol Microbiol 13, 265-272. https://doi.org/10.1111/j.1365-2958.1994.tb00421.x - Brown, J. L., Ross, T., McMeekin, T. A. and Nichols, P. D. 1997. Acid habituation of Escherichia coli and the potential role of cytoplasmic fatty acids in low pH tolerance. Int J Food Microbiol 37, 163-173. https://doi.org/10.1016/S0168-1605(97)00068-8
- Calhoun, L. N. and Kwon, Y. M. 2011. Structure, function and regulation of the DNA-binding protein DPS and its role in acid and oxidative stress resistance in Escherichia coli. J Appl Microbiol 110, 375-386. https://doi.org/10.1111/j.1365-2672.2010.04890.x
- Castanie-Cornet, M. P., Penfound, T. A., Smith, D., Elliott, J. F. and Foster, J. W. 1999. Control of acid resistance in Escherichia coli. J Bacteriol 181, 3525-3535.
- Chiancone, E. and Ceci, P. 2010. Role of DPS (DNA-binding proteins from starved cells) aggregation on DNA. Front Biosci 15, 122-131. https://doi.org/10.2741/3610
- Chiancone, E. and Ceci, P. 2010. The multifaceted capacity of DPS proteins to combat bacterial stress conditions: detoxification of iron and hydrogen peroxide and DNA binding. Biochim Biophys Acta 1800, 798-805. https://doi.org/10.1016/j.bbagen.2010.01.013
- Choi, S. H., Baumler, D. J. and Kaspar, C. W. 2000. Contribution of DPS to acid stress tolerance and oxidative stress tolerance in Escherichia coli O157:H7. Appl Environ Microbiol 66, 3911-3916. https://doi.org/10.1128/AEM.66.9.3911-3916.2000
- Drlica, K. and Rouviere-Yaniv, J. 1987. Histonelike proteins of bacteria. Microbiol Rev 51, 301-319.
- Grant, R. A., Filman, D. J., Finkel, S. E., Kolter, R. and Hogle, J. M. 1998. The crystal structure of DPS, a ferritin homolog that binds and protects DNA. Nat Struct Biol 5, 294-303. https://doi.org/10.1038/nsb0498-294
- Haikarainen, T. and Papaqeorqiou, A. C. 2010. DPS-like proteins: structural and functional insights into a versatile protein family. Cell Mol Life Sci 67, 341-351. https://doi.org/10.1007/s00018-009-0168-2
- Hong, Y., Wang, G. E. and Maier, R. J. 2006. Helicobacter hepaticus DPS protein plays an important role in protecting DNA from oxidative damage. Free Radic Res 40, 597-605. https://doi.org/10.1080/10715760600618882
- Ishikawa, T., Mizunoe, Y., Kawabata, S., Takade, A., Harada, M., Wai, S. N. and Yoshida, S. 2003. The iron-binding protein DPS confers hydrogen peroxide stress resistance to Campylobacter jejuni. J Bacteriol 185, 1010-1017. https://doi.org/10.1128/JB.185.3.1010-1017.2003
- Jeong, K. C., Baumler, D. J. and Kaspar, C. W. 2006. DPS expression in Escherichia coli O157:H7 requires an extended-10 region and is affected by the cAMP receptor protein. Biochim Biophys Acta 1759, 51-59. https://doi.org/10.1016/j.bbaexp.2006.02.001
- Jeong, K. C., Hung, K. F., Baumler, D. J., Byrd, J. J. and Kaspar, C. W. 2008. Acid stress damage of DNA is prevented by DPS binding in Escherichia coli O157:H7. BMC Microbiol 8, 181. https://doi.org/10.1186/1471-2180-8-181
- Jordan, K. N., Oxford, L. and O'Byrne, C. P. 1999. Survival of low-pH stress by Escherichia coli O157:H7: correlation between alterations in the cell envelope and increased acid tolerance. Appl Environ Microbiol 65, 3048-3055.
- Lindahl, T. and Nyberg, B. 1972. Rate of depurination of native deoxyribonucleic acid. Biochemistry 11, 3610-3618. https://doi.org/10.1021/bi00769a018
- Malone, A. S., Chung, Y. K. and Yousef, A. E. 2006. Genes of Escherichia coli O157:H7 that are involved in high-pressure resistance. Appl Environ Microbiol 72, 2661-2671. https://doi.org/10.1128/AEM.72.4.2661-2671.2006
- Martinez, A. and Kolter, R. 1997. Protection of DNA during oxidative stress by the nonspecific DNA-binding protein DPS. J Bacteriol 179, 5188-5194.
- McGhee, J. D. and Felsenfeld, G. 1980. Nucleosome structure. Annu Rev Biochem 49, 1115-1156. https://doi.org/10.1146/annurev.bi.49.070180.005343
- Miller, J. H. 1972. Experiments in olecular Genetics. Cold Spring Harbor Labortory Cold Spring Hatbor NY 466.
- Nair, S. and Finkel, S. E. 2004. DPS protects cells against multiple stresses during stationary phase. J Bacteriol 186, 4192-4198. https://doi.org/10.1128/JB.186.13.4192-4198.2004
- Ren, B., Tibbelin, G., Kajino, T., Asami, O and Ladenstein, R. 2003. The multi-layered structure of DPS with a novel di-nuclear ferroxidase center. J Mol Biol 329, 467-477. https://doi.org/10.1016/S0022-2836(03)00466-2
- Saris, Per E. J., Paulin, Lars G. and Uhlen, Mathias.1990. Direct amplication of DNA from colonies of Bacillus subtilis and Escherichia coli by the polymerase chain reaction. J Microbiol Methods 11, 121-126. https://doi.org/10.1016/0167-7012(90)90012-U
- Schmidt, R., Zahn, R., Bukau, B. and Mogk, A. 2009. ClpS is the recognition component for Escherichia coli substrates of the N-end rule degradation pathway. Mol Microbiol 72, 506-517. https://doi.org/10.1111/j.1365-2958.2009.06666.x
- Storz, G. and Imlay, J. A. 1999. Oxidative stress. Curr Opin Microbiol 2, 188-194. https://doi.org/10.1016/S1369-5274(99)80033-2
- Wolf, S. G., Frenkiel, D., Arad, T., Finkel, S. E., Kolter, R. and Minsky, A. 1999. DNA protection by stress-induced biocrystallization. Nature 400, 83-85. https://doi.org/10.1038/21918
- Yu, M. J., Ren, J., Zeng, Y. L., Zhou, S. N. and Lu, Y. J. 2009. The Legionella pneumophila DPS homolog is regulated by iron and involved in multiple stress tolerance. J Basic Microbiol 49, S79-S86. https://doi.org/10.1002/jobm.200800357
- Zhao, G., Ceci, P., Ilari, A., Giangiacomo, L., Laue, T. M., Chiancone, E. and Chasteen, N. D. 2002. Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. J Biol Chem 277, 27689-27696. https://doi.org/10.1074/jbc.M202094200