DOI QR코드

DOI QR Code

Mitochondrial DNA Diversity and Origin of Red Chittagong Cattle

  • Bhuiyan, M.S.A. (Division of Animal Science and Resources, Research Center for Transgenic Cloned Pigs Chungnam National University) ;
  • Bhuiyan, A.K.F.H. (Department of Animal Breeding and Genetics, Bangladesh Agricultural University) ;
  • Yoon, D.H. (Division of Animal Genomics and Bioinformatics, National Institute of Animal Science) ;
  • Jeon, J.T. (Division of Applied Life Science, Gyeongsang National University) ;
  • Park, C.S. (Division of Animal Science and Resources, Research Center for Transgenic Cloned Pigs Chungnam National University) ;
  • Lee, J.H. (Division of Animal Science and Resources, Research Center for Transgenic Cloned Pigs Chungnam National University)
  • Received : 2006.10.31
  • Accepted : 2007.04.07
  • Published : 2007.10.01

Abstract

To determine the origin and genetic diversity of Red Chittagong (RC) cattle in Bangladesh, we analyzed mitochondrial DNA displacement loop (D-loop) sequences of 48 samples along with 22 previously published sequences from Bos indicus and Bos taurus breeds. Twenty five haplotypes were identified in RC cattle that were defined by 44 polymorphic sites and nucleotide diversity was $0.0055{\pm}0.0026$. The estimated sequence divergence times between RC and other zebu cattle breeds studied ranged between 22,700-26,900 years before present (YBP) which, it is suggested, predate domestication of RC cattle. Furthermore, it is assumed that introgressions have occurred in this breed mainly from Indian zebu breeds in the recent millennia. The phylogenetic studies showed RC cattle clustered with Bos indicus lineage with two distinct haplogroups representing high genetic variability of this breed. These findings can be used for designing proper breeding and conservation strategies for RC cattle in Bangladesh.

Keywords

References

  1. Ahmed, Z. and T. S. Islam. 1987. Cattle breeding program through Artificial Insemination in Bangladesh. Artificial Insemination Extension Project Report. CCBS. Dhaka. Bangladesh.
  2. Bradley, D. G., D. E. MacHugh, P. Cunningham and R. T. Loftus. 1996. Mitochondrial diversity and the origins of African and European cattle. Proc. Natl. Acad. Sci. USA. 93:5131-5135 https://doi.org/10.1073/pnas.93.10.5131
  3. Bradley, D. G., R. T. Loftus, E. P. Cunningham and D. E. MacHugh. 1998. Genetics and domestic cattle origins. Evol. Anthropol. 6:79-86. https://doi.org/10.1002/(SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
  4. Brown, W. M., M. George and A. C. Wilson. 1979. Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 76:1967-1971. https://doi.org/10.1073/pnas.76.4.1967
  5. DLS (Directorate of Livestock Services). 2001. Status of existing cattle AI program and its improvement. Report of the Government of the People's Republic of Bangladesh.15 pp
  6. Excoffier, L., G. Laval and S. Schneider. 2006. Arlequin ver 3.01: An integrated software package for population genetics data analysis. University of Berne. Switzerland
  7. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791. https://doi.org/10.2307/2408678
  8. Habib, M. A., A. K. F. H. Bhuiyan, M. S. A. Bhuiyan and A. A. Khan. 2003. Performance of Red Chittagong cattle in Bangladesh Agricultural University dairy farm. Bang. J. Anim. Sci. 32:101-108.
  9. Hall, T. 1999. Bioedit: a biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symp. Series. 41
  10. Henkes, L. E., W. A. Silva Jr., J. C. F. Moraes and T. A. Weimer. 2005. Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. Genet. Mol. Biol. 28:60-66. https://doi.org/10.1590/S1415-47572005000100011
  11. Hossain, M. M., M. S. A. Bhuiyan, A. K. F. H. Bhuiyan and O. Hanotte, 2005. Red Chittagong-indigenous cattle genetic resource with promise in Bangladesh. Proceedings of the AHAT/BSAS international conference on "Integrating Livestock-Crop Systems to Meet the Challenges of Globalization" held in Khon Kaen, Thailand, during 14-18 November, 2005. Br. Soc. Anim. Sci. 2. P-T82.
  12. Kim, K. S., J. S. Yeo and C. B. Choi. 2002. Genetic diversity of north-east Asian cattle based on microsatellite data. Anim. Genet. 33:201-204. https://doi.org/10.1046/j.1365-2052.2002.00848.x
  13. Kumar, P., A. R. Freeman, R. T. Loftus, C. Gaillard, D. Q. Fuller and D. G. Bradley. 2003. Admixture analysis of South Asian cattle. Heredity 91:43-50. https://doi.org/10.1038/sj.hdy.6800277
  14. Kumar, S., K. Tamura and M. Nei. 2004. MEGA 3.1: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinformatics 5:150-163. https://doi.org/10.1093/bib/5.2.150
  15. Lai, S. J., Y. P. Liu, Y. X. Liu, X. W. Li and Y. G. Yao. 2006. Genetic diversity and origin of Chinese cattle revealed by mtDNA D-loop sequence variation. Mol. Phyl. Evol. 38:146-154. https://doi.org/10.1016/j.ympev.2005.06.013
  16. Lei, C. Z., W. Zhang, H. Chen, F. Lu, Q. L. Ge, R.Y. Liu, R. H. Dang, Y. Y. Yao, L. B. Yao, Z. F. Lu and Z. L. Zhao. 2007. Two Maternal Lineages Revealed by Mitochondrial DNA Dloop Sequences in Chinese Native Water Buffaloes (Bubalus bubalis). Asian-Aust. J. Anim. Sci. 20(4):471-476. https://doi.org/10.5713/ajas.2007.471
  17. Lee, Y. J., M. S. A. Bhuiyan, H. J. Chung, W. Y. Jung, K. D. Choi, B. G. Jang, W. K. Paek, J. T. Jeon, C. S. Park and J. H. Lee. 2007. Mitochondrial DNA Diversity of Korean Ogol Chicken. Asian-Aust. J. Anim. Sci. 20(4):477-481 https://doi.org/10.5713/ajas.2007.477
  18. Liu, Z. G., C. Z. Lei, J. Luo, C. Ding, G. H. Chen, H. Chang, K. H. Wang, X. X. Liu, X. Y. Zhang, X. J. Xiao and S. L. Wu. 2004. Genetic variability of mtDNA sequences in Chinese native chicken breeds. Asian-Aust. J. Anim. Sci. 17:903-909. https://doi.org/10.5713/ajas.2004.903
  19. Loftus, R. T., D. E. MacHugh, D. G. Bradley, P. M. Sharp and P. Cunningham. 1994. Evidence for two independent domestications of cattle. Proc. Natl. Acad. Sci. USA. 91:2757-2761. https://doi.org/10.1073/pnas.91.7.2757
  20. Mannen, H., M. Kohno, Y. Nagata, S. Tsuji, D. G. Bradley, J. S. Yeo, D. Nyamsamba, Y. Zagdsuren, M. Yokohama, K. Nomura and T. Amano. 2004. Independent mitochondrial origin and historical genetic differentiation in north eastern Asian cattle. Mol. Phyl. Evol. 32:539-544. https://doi.org/10.1016/j.ympev.2004.01.010
  21. Mannen, H., S. Tsuji, R. T. Loftus and D. G. Bradley. 1998. Mitochondrial DNA variation and evolution of Japanese black cattle (Bos taurus). Genet. 150:1169-1175.
  22. Malau-Aduli, A. E. O., A. Nishimura-Abe, T. Niibayashi, Y. Yasuda, T. Kojima, S. Abe, K. Oshima, K. Hasegawa and M. Komatsu. 2004. Mitochondrial DNA Polymorphism, Maternal Lineage and Correlations with Postnatal Growth of Japanese Black Beef Cattle to Yearling Age. Asian-Aust. J. Anim. Sci. 17(11):1484-1490. https://doi.org/10.5713/ajas.2004.1484
  23. Meadow, R. H. 1993. Animal domestication in the Middle East: a revised view from the Eastern Margin. In: Harappan civilization (Ed. G. Possehl). Oxford & IBH. New Delhi. pp. 295-320.
  24. Nei, M. 1987. Molecular Evolutionary Genetics. Columbia University Press. New York.
  25. Odahara, S., H. J. Chung, S. H. Choi, S. L. Yu, S. Sasazaki, H. Mannen, C. S. Park and J. H. Lee. 2006. Mitochondrial DNA diversity of Korean native goats. Asian-Aust. J. Anim. Sci. 19:482-485. https://doi.org/10.5713/ajas.2006.482
  26. Parsons, T. J., D. S. Muniec, K. Sullivan, N. Woodyatt and R. A. Greiner. 1997. A high observed substitution rate in the human mitochondrial DNA control region. Nat. Genet. 15:363-368. https://doi.org/10.1038/ng0497-363
  27. Raymond, M. and F. Rousset. 1995. An exact test for population differentiation. Evolution. 49:1280-1283. https://doi.org/10.2307/2410454
  28. Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genet. 139:457-462.
  29. Tamura, K. and M. Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
  30. Thompson, J. D., D. G. Higgins and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680. https://doi.org/10.1093/nar/22.22.4673
  31. Troy, C. S., D. E. Machugh, J. F. Bailey, D. A. Magee, R. T. Loftus, P. Cunningham, A. T. Chamberlain, B. C. Sykes and D. G. Bradley. 2001. Genetic evidence for Near-Eastern origins of European cattle. Nature. 410:1088-1091. https://doi.org/10.1038/35074088
  32. Vasconcellos, L. P. M., D. T. Talhari, A. P. Pereira, L. L. Coutinho and L. C. A. Regitano. 2003. Genetic characterization of Aberdeen Angus cattle using molecular markers. Genet. Mol. Biol. 26(2):133-137. https://doi.org/10.1590/S1415-47572003000200005
  33. Weir, B. S. 1996. Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Assoc. Inc. Sunderland, MA, USA.
  34. Wendorf, F. and R. Schild. 1994. Are the early Holocene cattle in the Eastern Sahara domestic or wild? Evol. Anthropol. 3:118-128. https://doi.org/10.1002/evan.1360030406
  35. Yoon, D. H., H. K. Lee, S. J. Oh, K. C. Hong, G. J. Jeon, H. S. Kong and J. H. Lee. 2005. Genetic Relationships of Cattle Breeds Assessed by PCR-RFLP of the Bovine Mitochondrial DNA D-loop Region. Asian-Aust. J. Anim. Sci. 18(10):1368-1374. https://doi.org/10.5713/ajas.2005.1368

Cited by

  1. Genetic Variability of mtDNA D-loop Region in Korean Native Chickens vol.36, pp.4, 2009, https://doi.org/10.5536/KJPS.2009.36.4.323
  2. Genome-wide Single Nucleotide Polymorphism Analyses Reveal Genetic Diversity and Structure of Wild and Domestic Cattle in Bangladesh vol.27, pp.10, 2014, https://doi.org/10.5713/ajas.2014.14160
  3. Genetic diversity and relationship of Indian cattle inferred from microsatellite and mitochondrial DNA markers vol.16, pp.1, 2015, https://doi.org/10.1186/s12863-015-0221-0
  4. ) breeds pp.1532-2378, 2018, https://doi.org/10.1080/10495398.2018.1476376
  5. Genetic diversity of Myanmar cattle breeds using complete mitochondrial D-loop sequence vol.46, pp.2, 2007, https://doi.org/10.5924/abgri.46.57
  6. The mitochondrial DNA D-loop diversity of Bali cattle in breeding centers vol.492, pp.None, 2007, https://doi.org/10.1088/1755-1315/492/1/012110
  7. Red Chittagong Cattle: An Indigenous Breed to Help Tackle the Challenges of Modern Animal Production Systems vol.5, pp.None, 2021, https://doi.org/10.3389/fsufs.2021.688641
  8. Unraveling the Genetic Diversity and Population Structure of Bangladeshi Indigenous Cattle Populations Using 50K SNP Markers vol.11, pp.8, 2007, https://doi.org/10.3390/ani11082381