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Ubiquitin Fusion System for Recombinant Peptide Expression and Purification: Application to the Cytoplasmic Domain of Syndecan-4

  • Chae, Young-Kee (Department of Chemistry and Recombinant Protein Expression Center, Sejong University) ;
  • Lee, Ha-Yan (Department of Chemistry and Recombinant Protein Expression Center, Sejong University) ;
  • Lee, Weon-Tae (Department of Biochemistry and HTSD-NMR & Application NRL, Yonsei University)
  • Published : 2007.09.20

Abstract

The cytoplasmic domain of syndecan-4, a type I transmembrane heparan sulfate proteoglycan, was overexpressed as a fused form with the ubiquitin molecule in Escherichia coli, and the fusion protein was purified using immobilized metal affinity chromatography (IMAC). The cytoplasmic domain was released from its fusion partner by using yeast ubiquitin hydrolase (YUH), and subsequently purified by reverse phase chromatography. The integrity of the resulting peptide fragment was checked by MALDI-TOF and NMR spectroscopy. The yield of the peptide was 3.0-1.5 mg per liter in LB or minimal medium, respectively. The recombinant expression and purification of this domain will enable us its structural and functional studies using multidimensional NMR spectroscopy.

Keywords

References

  1. Bernfield, M.; Gotte, M.; Park, P. W.; Reizes, O.; Fitzgerald, M. L.; Lincecum, J.; Zako, M. Annu. Rev. Biochem. 1999, 68, 729-777 https://doi.org/10.1146/annurev.biochem.68.1.729
  2. Carey, D. J. Biochem. J. 1997, 327, 1-16 https://doi.org/10.1042/bj3270001
  3. Couchman, J. R.; Woods, A. J. Cell Sci. 1999, 112, 3415-3420
  4. Woods, A.; McCarthy, J. B.; Furcht, L. T.; Couchman, J. R. Mol. Biol. Cell 1993, 4, 605-613 https://doi.org/10.1091/mbc.4.6.605
  5. Saoncella, S.; Echtermeyer, F.; Denhez, F.; Nowlen, J. K.; Mosher, D. F.; Robinson, S. D.; Hynes, R. O.; Goetinck, P. F. Proc. Natl. Acad. Sci. USA 1999, 96, 2805-2810
  6. Grootjans, J. J.; Zimmerman, P.; Reekmans, G.; Smets, A.; Degeest, G.; Durr, J.; David, G. Proc. Natl. Acad. Sci. USA 1997, 94, 13683-13688 https://doi.org/10.1073/pnas.94.25.13683
  7. Hsueh, Y. P.; Yang, F. C.; Kharazia, V.; Naisbitt, S.; Cohen, A. R.; Weinberg, R. J; Sheng, M. J. Cell Biol. 1998, 142, 139-151 https://doi.org/10.1083/jcb.142.1.139
  8. Gao, Y.; Li, M.; Chen, W.; Simons, M. J. Cell Physiol. 2000, 184, 373-379 https://doi.org/10.1002/1097-4652(200009)184:3<373::AID-JCP12>3.0.CO;2-I
  9. Grootjans, J. J.; Reekmans, G.; Ceulemans, H.; David, G. J. Biol. Chem. 2000, 275, 19933-19941 https://doi.org/10.1074/jbc.M002459200
  10. Zimmermann, P.; Tomatis, D.; Rosas, M.; Grootjans, J.; Leenarts, I.; Degeest, G.; Reekmans, G.; Coomans, C.; David, G. Mol. Biol. Cell 2001, 12, 339-350 https://doi.org/10.1091/mbc.12.2.339
  11. Oh, E. S.; Woods, A.; Couchman, J. R. J. Biol. Chem. 1997, 272, 8133-8136 https://doi.org/10.1074/jbc.272.13.8133
  12. Oh, E. S.; Woods, A.; Lim, S. T.; Theibert, A.; Couchman, J. R. J. Biol. Chem. 1998, 273, 10624-10629 https://doi.org/10.1074/jbc.273.17.10624
  13. Lee, D.; Oh, E. S.; Woods, A.; Couchman, J. R.; Lee, W. J. Biol. Chem. 1998, 273, 13022-13029 https://doi.org/10.1074/jbc.273.21.13022
  14. Couchman, J. R.; Vogt, S.; Lim, S. T.; Lim, Y.; Oh, E. S.; Prestwich, G. D.; Theibert, A.; Lee, W.; Woods, A. J. Biol. Chem. 2002, 277, 49296-49303 https://doi.org/10.1074/jbc.M209679200
  15. Lim, S. T.; Langley, R. L.; Couchman, J. R.; Woods, A. J. Biol. Chem. 2003, 278, 13795-13802 https://doi.org/10.1074/jbc.M208300200
  16. Shin, J.; Lee, W.; Lee, D.; Koo, B. K.; Lim, Y.; Woods, A.; Couchman, J. R.; Oh, E. S. Biochemistry 2001, 40, 8471-8478 https://doi.org/10.1021/bi002750r
  17. Koo, B. K.; Jung, Y. S.; Shin, J.; Han, I.; Mortier, E.; Zimmermann, P.; Whiteford, J. R.; Couchman, J. R.; Oh, E. S.; Lee, W. J. Mol. Biol. 2006, 355, 651-663 https://doi.org/10.1016/j.jmb.2005.09.087
  18. Moon, W. J.; Hwang, D. K.; Park, E. J.; Kim, Y. M.; Chae, Y. K. Protein Expr. Purif. 2007, 51, 141-146 https://doi.org/10.1016/j.pep.2006.07.010
  19. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277-293
  20. Kohno, T.; Kusunoki, H.; Sato, K.; Wakamatsu, K. J. Biomol. NMR 1998, 12, 109-121 https://doi.org/10.1023/A:1008254603368
  21. Chae, Y. K.; Cho, K. S.; Chun, W.; Lee, K. Protein Pept. Lett. 2003, 10, 369-374 https://doi.org/10.2174/0929866033478861

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