Characterization of Expressed Sequence Tags (ESTs) Generated from the Bombyx mandarina Whole Larvae and Molecular Cloning of Serine Protease Homologue Gene

  • Hwang, Jae Sam (Department of Agricultural Biology, National Institute of Agricultural Science and Technology) ;
  • Yun, Eun Young (Department of Agricultural Biology, National Institute of Agricultural Science and Technology) ;
  • Goo, Tae Won (Department of Agricultural Biology, National Institute of Agricultural Science and Technology) ;
  • Kim, Iksoo (Department of Agricultural Biology, National Institute of Agricultural Science and Technology) ;
  • Choi, Kwang Ho (Department of Agricultural Biology, National Institute of Agricultural Science and Technology) ;
  • Seong, Su Il (Department of Life Science, Collage of Natural Science, The University of Suwon) ;
  • Kim, Keun Young (Department of Agricultural Biology, National Institute of Agricultural Science and Technology) ;
  • Lee, Sang Mong (Department of Sericultural and Entomology, Faculty of Agriculture, Miryang National University) ;
  • Kang, Seok Woo (Department of Agricultural Biology, National Institute of Agricultural Science and Technology)
  • Published : 2004.12.01

Abstract

We constructed an oligo-d(T) primed directional cDNA library from the Bombyx mandarina whole larvae. In an effort to isolate genes expressed in the B. mandarina, 227 expressed sequence tags (ESTs) were generated by single-pass sequencing from the cDNA library. Sequence analysis showed that 107 clones (47.1%) were classified into known genes and 120 clones (52.9%) were novel transcripts, which are unknown for their function. Of the 107 known genes, the most abundant gene was found to be actin and followed by serine protease in the expression profile. Among these clones, a serine protease homolog (BmSP) which is a class of proteolytic enzymes isolated. Full-length sequence of the BmSP cDNA clone was 922 bp in length and has an open reading frame of 276 amino acids. The conserved histidine, aspatic acid and serine residues forming the catalytic center as well as cysteine residues contributing to three disulphide bonds also were found in Bmsp gene. mRNA expression analysis revealed a high and specific expression of the gene only in midgut tissue, suggesting that BmSP gene is closely associated with the expression of digestive enzyme.

Keywords

References

  1. Adams, M. D., A. R. Kerlavage, R. D. Fleischmann, R. A. Fuldner, C. J. Bult, N. H. Lee, E. F. Kirkness, K. G. Weinstock, J. D. Gocayne, O. White, G. Sutton and J. C. Venter (1995) Initial assessment of human gene diversity and expressed patterns based upon 83 million nucleotides of cDNA sequence. Nature 377, 3-7
  2. Barillas-Mury, C., R. Graf, Hagedorn and M. A. Wells (1991) cDNA and deduced amino acid sequence of a blood mealinduced trypsin from the mosquito, Aedes aegypti. Insect Biochem. 21, 825-831 https://doi.org/10.1016/0020-1790(91)90089-W
  3. Cooper, N. R. (1985) The classical complement pathway: activation and regulation of the first complement component. Adv. Lmmunol. 37, 151-216 https://doi.org/10.1016/S0065-2776(08)60340-5
  4. Davie, E. W. (1986) Introduction to the blood coagulation cascade and the cloning of blood coagulation factors. J. Protein Chem. 5, 247-253 https://doi.org/10.1007/BF01025423
  5. Delotto, R. and P. Spierer (1986) Agene required for the specification of dorsal- ventral pattern in Drosophila appears to encode a serine protease. Nature 323, 688-692 https://doi.org/10.1038/323688a0
  6. Douglass, J., O. Civelli and E. Herbert (1984) Polyprotein gene expression: generation of diversity of neuroendocrine peptides. Annu. Rev. Biochem. 53, 665- 715 https://doi.org/10.1146/annurev.bi.53.070184.003313
  7. Fitzgerald, M. and V. Shenk (1981) The sequence 5-AAUAAA-3 forms parts of the recognition site for polyadenyllation of late SV40 mRNAs. Cell 24, 251-260 https://doi.org/10.1016/0092-8674(81)90521-3
  8. Graf, R. and H. Briegel (1985) Isolation of trypsin isozymes from the mosquito Aedes aegypti (L.). Insect Biochem. 15, 611-618 https://doi.org/10.1016/0020-1790(85)90122-2
  9. Hillier, L. D., G. Lennon, M. Becker, M. F. Bonaldo, B. Chiapelli, S. Chissoe, N. Dietrich, T. DuBuque, A. Favello, W. Gish, M. Hawkins, M. Hultman, T. Kucaba, M. Lacy, E. Mardis, B. Moore, M. Morris, J. Parsons, C. Prange, L. Rifkin, T. Rohlfing, K. Schellenberg, M. B. Soares, F. Tan, J. Thierry-Meg, E. Trevaskis, K. Underwood, P. Wohldman, R. Waterston, R. Wilson and M. Marra (1996) Generation and analysis of 280,000 human expressed sequence tags. Genome Res. 6, 807-828 https://doi.org/10.1101/gr.6.9.807
  10. Houlgatte, R., R. Mariage-Samson, S. Duprat, A. Tessier, S. Bentolila, B. Lamy and C. Auffray (1995) The Genexpress Index: A resource for gene discovery and the gentic map of the human genome. Genome Res. 5, 272-304 https://doi.org/10.1101/gr.5.3.272
  11. Jany, K. D., G. Beckler, G. Pfeiderer and J. lshay (1983) Amino and sequence of an insect chymotrypsin from the larvae of the hornet. Vespa orientalis. Biochem. Biophys. Res. Commun. 110, 1-7 https://doi.org/10.1016/0006-291X(83)91251-2
  12. Kalhok, S. E., L. M. Tabak, D. E. Prosser, W. Brook, A. E. R. Downe and B. N. White (1993) Isolation, sequencing and characterization of two cDNA clones coding for trypsin-like enzymes from the midgut of Aedes aegypti. Insect Mol. BioI. 2, 71-79 https://doi.org/10.1111/j.1365-2583.1993.tb00127.x
  13. Khan, A. S., A. S. Wilcox and M. H. Polymeropoulos (1992) Single pass sequencing and physical and genetic mapping of human brain cDNAs. Nature Genet. 2, 180-185 https://doi.org/10.1038/ng1192-180
  14. Kirkness, E. F. (1996) Assessment of human gene diversity and expression pattern using expressed sequence tags. Essays Biochem. 31, 1-9
  15. Milner, R. J. and J. G. Sutcliffe (1983). Gene expression in rat brain. Nucleic Acids Res. 11, 5497-54520 https://doi.org/10.1093/nar/11.16.5497
  16. Muller, H. M., J. M. Crampton, A. D. Torre, R. Sinden and A. Crisanti (1993) Members of a trypsin gene family in Anopheles gambiae are induced in the gut by blood meal. EMBO J. 12, 2891-2900
  17. Neurath, H. (1989) Proteolytic processing and physiological regulation. Trends Biochem. Sci. 14, 268-271 https://doi.org/10.1016/0968-0004(89)90061-3
  18. Newman, T. (1994) Genes galore: A summary of methods for accessing results from large-scale partial sequencing of anonymous aravidopsis cDNA clones. Plant Physiol. 106, 1241-1225 https://doi.org/10.1104/pp.106.4.1241
  19. Putney, S. D., W. C. Herlihy and P. Schimmel (1983) A new troponin T and cDNA clones for 13 different muscle proteins, found by shotgun sequencing. Nature 302, https://doi.org/10.1038/302718a0
  20. Sambrook, J., E. F. Fritsch and T. Maniatis (1989). Molecular cloning: A laboratory manual, 2nd edition. pp. 25-88, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
  21. Sasaki, T., J. Song, Y. Koga-Ban, E. Matsui, F. Fang, H. Higo, H. Nagasaki, M. Hori, M. Miya and E. Murauama-Kayano (1994) Toward catalogung all rice genes: Large-scale sequencing of a normalized cDNA library. Proc. Natl. Acad. Sci. USA 91, 9228-9232 https://doi.org/10.1073/pnas.91.20.9228